Rroxscaffold_4G00298580

Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
18381104 .. 18383179
2076 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00298580.1

Sequence Viewer

Length: 1098 bp
ATGGCATTCACGACCGCCGCTTTCGTCTCCCCACCCGGACTCGTCGTCCGCTGCATGAACAACGTGCCTGACAGCACAGTCTACGGCGGCCCAAAGTCGCAAAGCCCAGACCGGAGAGTCACCGTCACTCAAATAAAACAGAAGCACAGGAAGGGCGAGCCCATCACCGCCGTCACCGCCTACGACTACCCCTCGGCGGTGCACTTGGACTTGGCAGGGATAGACATTGCCGTGGTCGGCGACTCGGCCGCGATGGTTGTTCACGGATATGATACCACTCTCCCCATAACGCTGGAGGAAATGCTCGTCCACTGCCGAGCGGTGGCGCGTGGGGCCAAGCACCAGCTTTTGGTTGCGGACTTGCTGTTCGGATTCTACGAGTCTGGCTCCATTCAGGTACACCAGCATTGTTTCGAATATGAGCAGGCTATCGATTCAGCGATGAGAATTTTAAAGGAAGGCGCAATGGATGCAGTAAAGTTGGAAGCAGGGGCACCTTCAAGAATTACTGCGGCAAAAGCTATTGTTGAAGCAGGAATTGCTGTGATGGGGCATGTAGGACTTACTCCTCAGGCTATTAGCGTTCTCGGGGGTTTTAGGCCACAAGGAAGCAATGTGGCTAGTGCTGTAAAGATTGTGGAGACAGCGCTGGCTTTGCAAGAAGCAGGGTGCTTTGCAATTGTATTGGAATGCGTGCCACCACTAGTGGCAGCTGCTGCAACATCTGCTCTTCAGATTCCTACAATTGGCATTGGAGCAGGGTCTTTTTGCAGTGGGCAGGTTGCAGATAGTAGGAATTCGGGTAGCCAGGTGCTAGTTTACCATGATCTTCTTGGAATGATGCAGCATCCACATCATGCAAAGGTTACCCCAAAATTCTGTAAGCAATATGCACATGTTGGAGACGTCATCAACAAAGCTCTAGTAGACTACAAGGAAGAAGTCACCAGTGGTGCGTTTCCAGGCGCTTCCCATAGCCCATATAAAATCAATGCTGCTGATGTTGATGGCTTTGTTAGTGAGTTACGAAGGATGGGTTTGGACAAGGCAGCATCTGCGGCGGCTGAAGTAGCTGACAAGAATAATACAAGCAAATGA

Protein Analysis

365

Amino Acids

38.37

Weight (kDa)

6.39

Isoelectric Point (pI)

30.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pantoate_transf PF02548 39 - 322 3.9e-90 Ketopantoate hydroxymethyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 77, 116
AatII GACGTC 1 cut(s) 909
Acc36I ACCTGC 1 cut(s) 769
AccB1I GGYRCC 1 cut(s) 493
AccB7I CCANNNNNTGG 1 cut(s) 349
AccBSI CCGCTC 1 cut(s) 320
AccI GTMKAC 2 cut(s) 81, 927
AccII CGCG 2 cut(s) 251, 328
AcoI YGGCCR 1 cut(s) 246
AcsI RAATTY 3 cut(s) 447, 796, 875
AcuI CTGAAG 2 cut(s) 716, 1086
AcyI GRCGYC 1 cut(s) 906
AfaI GTAC 1 cut(s) 399
AfeI AGCGCT 1 cut(s) 648
AfiI CCNNNNNNNGG 4 cut(s) 196, 322, 349, 746
AflIII ACRYGT 1 cut(s) 895
AgsI TTSAA 2 cut(s) 501, 530
AhdI GACNNNNNGTC 1 cut(s) 44
AhlI ACTAGT 1 cut(s) 703
AjnI CCWGG 2 cut(s) 807, 961
AloI GAACNNNNNNTCC 2 cut(s) 350, 382
AluBI AGCT 5 cut(s) 346, 521, 713, 920, 1073
AluI AGCT 5 cut(s) 346, 521, 713, 920, 1073
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 3 cut(s) 31, 635, 897
Alw44I GTGCAC 1 cut(s) 200
AlwNI CAGNNNCTG 2 cut(s) 716, 1055
Ama87I CYCGRG 1 cut(s) 587
Aor51HI AGCGCT 1 cut(s) 648
AoxI GGCC 4 cut(s) 88, 246, 333, 599
ApaLI GTGCAC 1 cut(s) 200
ApeKI GCWGC 7 cut(s) 51, 710, 713, 716, 844, 995, 1049
ApoI RAATTY 3 cut(s) 447, 796, 875
ArsI GACNNNNNNTTYG 2 cut(s) 350, 382
AspLEI GCGC 4 cut(s) 328, 464, 649, 968
AspS9I GGNCC 2 cut(s) 89, 333
AsuC2I CCSGG 1 cut(s) 36
AsuHPI GGTGA 4 cut(s) 112, 157, 166, 937
AsuII TTCGAA 1 cut(s) 414
AvaI CYCGRG 1 cut(s) 587
AxyI CCTNAGG 1 cut(s) 570
BaeGI GKGCMC 2 cut(s) 204, 496
BanI GGYRCC 1 cut(s) 493
BanII GRGCYC 1 cut(s) 162
Bbv12I GWGCWC 1 cut(s) 204
BbvI GCAGC 7 cut(s) 38, 700, 703, 722, 856, 982, 1061
BccI CCATC 5 cut(s) 170, 247, 541, 1001, 1027
BceAI ACGGC 3 cut(s) 100, 155, 215
BciT130I CCWGG 2 cut(s) 809, 963
BcnI CCSGG 1 cut(s) 36
BcoDI GTCTC 3 cut(s) 31, 635, 897
BcuI ACTAGT 1 cut(s) 703
BfaI CTAG 4 cut(s) 621, 704, 815, 923
BfoI RGCGCY 2 cut(s) 650, 969
BfuAI ACCTGC 1 cut(s) 769
Bme1390I CCNGG 3 cut(s) 36, 809, 963
BmeRI GACNNNNNGTC 1 cut(s) 44
BmeT110I CYCGRG 1 cut(s) 587
BmgT120I GGNCC 2 cut(s) 89, 333
BmiI GGNNCC 3 cut(s) 334, 388, 495
BmrFI CCNGG 3 cut(s) 36, 809, 963
BmsI GCATC 4 cut(s) 460, 831, 856, 1061
BplI GAGNNNNNCTC 2 cut(s) 371, 403
BpmI CTGGAG 1 cut(s) 314
Bpu14I TTCGAA 1 cut(s) 414
BpuMI CCSGG 1 cut(s) 36
Bsa29I ATCGAT 1 cut(s) 432
BsaHI GRCGYC 1 cut(s) 906
BsaJI CCNNGG 2 cut(s) 192, 231
BsaWI WCCGGW 1 cut(s) 111
Bsc4I CCNNNNNNNGG 4 cut(s) 196, 322, 349, 746
Bse1I ACTGG 1 cut(s) 948
Bse21I CCTNAGG 1 cut(s) 570
Bse3DI GCAATG 3 cut(s) 225, 471, 619
BseBI CCWGG 2 cut(s) 809, 963
BseCI ATCGAT 1 cut(s) 432
BseDI CCNNGG 2 cut(s) 192, 231
BseGI GGATG 3 cut(s) 475, 847, 1038
BseLI CCNNNNNNNGG 4 cut(s) 196, 322, 349, 746
BseMI GCAATG 3 cut(s) 225, 471, 619
BseMII CTCAG 1 cut(s) 584
BseNI ACTGG 1 cut(s) 948
BseRI GAGGAG 1 cut(s) 558
BseSI GKGCMC 2 cut(s) 204, 496
BseX3I CGGCCG 1 cut(s) 246
BseXI GCAGC 7 cut(s) 38, 700, 703, 722, 856, 982, 1061
Bsh1236I CGCG 2 cut(s) 251, 328
Bsh1285I CGRYCG 2 cut(s) 15, 249
BshFI GGCC 4 cut(s) 90, 248, 335, 601
BshNI GGYRCC 1 cut(s) 493
BshVI ATCGAT 1 cut(s) 432
BsiEI CGRYCG 2 cut(s) 15, 249
BsiHKAI GWGCWC 1 cut(s) 204
BsiHKCI CYCGRG 1 cut(s) 587
BsiSI CCGG 2 cut(s) 36, 112
BslI CCNNNNNNNGG 4 cut(s) 196, 322, 349, 746
BsmAI GTCTC 3 cut(s) 31, 635, 897
BsmBI CGTCTC 2 cut(s) 31, 897
BsmI GAATGC 2 cut(s) 5, 695
BsnI GGCC 4 cut(s) 90, 248, 335, 601
BsoBI CYCGRG 1 cut(s) 587
Bsp119I TTCGAA 1 cut(s) 414
Bsp1286I GDGCHC 3 cut(s) 162, 204, 496
Bsp143I GATC 1 cut(s) 826
BspANI GGCC 4 cut(s) 90, 248, 335, 601
BspCNI CTCAG 1 cut(s) 583
BspDI ATCGAT 1 cut(s) 432
BspFNI CGCG 2 cut(s) 251, 328
BspLI GGNNCC 3 cut(s) 334, 388, 495
BspMI ACCTGC 1 cut(s) 769
BspQI GCTCTTC 1 cut(s) 735
BspT104I TTCGAA 1 cut(s) 414
BspT107I GGYRCC 1 cut(s) 493
BsrBI CCGCTC 1 cut(s) 320
BsrDI GCAATG 3 cut(s) 225, 471, 619
BsrI ACTGG 1 cut(s) 948
BssECI CCNNGG 2 cut(s) 192, 231
BssMI GATC 1 cut(s) 826
BssNI GRCGYC 1 cut(s) 906
Bst2UI CCWGG 2 cut(s) 809, 963
Bst4CI ACNGT 2 cut(s) 79, 124
Bst6I CTCTTC 1 cut(s) 735
BstACI GRCGYC 1 cut(s) 906
BstAPI GCANNNNNTGC 5 cut(s) 470, 539, 716, 725, 1055
BstBI TTCGAA 1 cut(s) 414
BstC8I GCNNGC 4 cut(s) 158, 426, 651, 695
BstDEI CTNAG 1 cut(s) 570
BstDSI CCRYGG 1 cut(s) 231
BstEII GGTNACC 1 cut(s) 865
BstF5I GGATG 3 cut(s) 475, 847, 1038
BstFNI CGCG 2 cut(s) 251, 328
BstH2I RGCGCY 2 cut(s) 650, 969
BstHHI GCGC 4 cut(s) 328, 464, 649, 968
BstKTI GATC 1 cut(s) 829
BstMAI GTCTC 3 cut(s) 31, 635, 897
BstMBI GATC 1 cut(s) 826
BstMCI CGRYCG 2 cut(s) 15, 249
BstNI CCWGG 2 cut(s) 809, 963
BstNSI RCATGY 2 cut(s) 557, 899
BstPI GGTNACC 1 cut(s) 865
BstSCI CCNGG 3 cut(s) 34, 807, 961
BstSLI GKGCMC 2 cut(s) 204, 496
BstUI CGCG 2 cut(s) 251, 328
BstV1I GCAGC 7 cut(s) 38, 700, 703, 722, 856, 982, 1061
BstXI CCANNNNNNTGG 1 cut(s) 292
BstZI CGGCCG 1 cut(s) 246
Bsu15I ATCGAT 1 cut(s) 432
Bsu36I CCTNAGG 1 cut(s) 570
BsuRI GGCC 4 cut(s) 90, 248, 335, 601
BsuTUI ATCGAT 1 cut(s) 432
BtgI CCRYGG 1 cut(s) 231
BtgZI GCGATG 2 cut(s) 266, 455
BtsCI GGATG 3 cut(s) 475, 847, 1038
BtsI GCAGTG 2 cut(s) 310, 778
BtsIMutI CAGTG 3 cut(s) 310, 778, 955
BveI ACCTGC 1 cut(s) 769
Cac8I GCNNGC 4 cut(s) 158, 426, 651, 695
CaiI CAGNNNCTG 2 cut(s) 716, 1055
CfoI GCGC 4 cut(s) 328, 464, 649, 968
Cfr13I GGNCC 2 cut(s) 89, 333
ClaI ATCGAT 1 cut(s) 432
Csp6I GTAC 1 cut(s) 398
CviAII CATG 5 cut(s) 55, 554, 824, 857, 896
CviQI GTAC 1 cut(s) 398
DdeI CTNAG 1 cut(s) 570
DpnI GATC 1 cut(s) 828
DpnII GATC 1 cut(s) 826
DraI TTTAAA 1 cut(s) 453
DrdI GACNNNNNNGTC 2 cut(s) 77, 116
DriI GACNNNNNGTC 1 cut(s) 44
DseDI GACNNNNNNGTC 2 cut(s) 77, 116
EaeI YGGCCR 1 cut(s) 246
EagI CGGCCG 1 cut(s) 246
Eam1104I CTCTTC 1 cut(s) 735
Eam1105I GACNNNNNGTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 735
EclXI CGGCCG 1 cut(s) 246
Eco24I GRGCYC 1 cut(s) 162
Eco47III AGCGCT 1 cut(s) 648
Eco52I CGGCCG 1 cut(s) 246
Eco57I CTGAAG 2 cut(s) 716, 1086
Eco81I CCTNAGG 1 cut(s) 570
Eco88I CYCGRG 1 cut(s) 587
Eco91I GGTNACC 1 cut(s) 865
EcoO65I GGTNACC 1 cut(s) 865
EcoRI GAATTC 1 cut(s) 796
EcoRII CCWGG 2 cut(s) 807, 961
EcoT38I GRGCYC 1 cut(s) 162
Esp3I CGTCTC 2 cut(s) 31, 897
FaeI CATG 5 cut(s) 58, 557, 827, 860, 899
FatI CATG 5 cut(s) 54, 553, 823, 856, 895
FblI GTMKAC 2 cut(s) 81, 927
FokI GGATG 3 cut(s) 482, 834, 1045
FriOI GRGCYC 1 cut(s) 162
FspBI CTAG 4 cut(s) 621, 704, 815, 923
GlaI GCGC 4 cut(s) 327, 463, 648, 967
GsuI CTGGAG 1 cut(s) 314
HaeII RGCGCY 2 cut(s) 650, 969
HaeIII GGCC 4 cut(s) 90, 248, 335, 601
HapII CCGG 2 cut(s) 36, 112
HhaI GCGC 4 cut(s) 328, 464, 649, 968
Hin1I GRCGYC 1 cut(s) 906
Hin1II CATG 5 cut(s) 58, 557, 827, 860, 899
Hin6I GCGC 4 cut(s) 326, 462, 647, 966
HinP1I GCGC 4 cut(s) 326, 462, 647, 966
HinfI GANTC 7 cut(s) 39, 117, 242, 372, 380, 434, 736
HpaII CCGG 2 cut(s) 36, 112
HphI GGTGA 4 cut(s) 112, 157, 166, 937
Hpy166II GTNNAC 7 cut(s) 82, 202, 262, 310, 400, 820, 928
Hpy188I TCNGA 2 cut(s) 371, 735
Hpy188III TCNNGA 2 cut(s) 10, 501
Hpy8I GTNNAC 7 cut(s) 82, 202, 262, 310, 400, 820, 928
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 4 cut(s) 145, 452, 507, 1023
HpyCH4III ACNGT 2 cut(s) 79, 124
HpyCH4IV ACGT 2 cut(s) 63, 906
HpyF3I CTNAG 1 cut(s) 570
HpySE526I ACGT 2 cut(s) 63, 906
Hsp92I GRCGYC 1 cut(s) 906
Hsp92II CATG 5 cut(s) 58, 557, 827, 860, 899
HspAI GCGC 4 cut(s) 326, 462, 647, 966
Kzo9I GATC 1 cut(s) 826
LguI GCTCTTC 1 cut(s) 735
LmnI GCTCC 2 cut(s) 392, 755
Lsp1109I GCAGC 7 cut(s) 38, 700, 703, 722, 856, 982, 1061
LweI GCATC 4 cut(s) 460, 831, 856, 1061
MaeI CTAG 4 cut(s) 621, 704, 815, 923
MaeII ACGT 2 cut(s) 63, 906
MaeIII GTNAC 6 cut(s) 118, 124, 172, 865, 943, 1023
MalI GATC 1 cut(s) 828
MbiI CCGCTC 1 cut(s) 320
MboI GATC 1 cut(s) 826
MboII GAAGA 3 cut(s) 722, 821, 950
MfeI CAATTG 2 cut(s) 678, 744
MhlI GDGCHC 3 cut(s) 162, 204, 496
MluCI AATT 7 cut(s) 447, 504, 537, 678, 744, 796, 875
MlyI GAGTC 4 cut(s) 33, 126, 236, 389
MmeI TCCRAC 2 cut(s) 462, 880
MnlI CCTC 3 cut(s) 202, 289, 579
MseI TTAA 1 cut(s) 452
MslI CAYNNNNRTG 2 cut(s) 230, 267
MspA1I CMGCKG 2 cut(s) 51, 713
MspI CCGG 2 cut(s) 36, 112
MspR9I CCNGG 3 cut(s) 36, 809, 963
MunI CAATTG 2 cut(s) 678, 744
Mva1269I GAATGC 2 cut(s) 5, 695
MvaI CCWGG 2 cut(s) 809, 963
MvnI CGCG 2 cut(s) 251, 328
NciI CCSGG 1 cut(s) 36
NdeII GATC 1 cut(s) 826
NlaIII CATG 5 cut(s) 58, 557, 827, 860, 899
NlaIV GGNNCC 3 cut(s) 334, 388, 495
NmeAIII GCCGAG 3 cut(s) 173, 224, 341
NmuCI GTSAC 4 cut(s) 118, 124, 172, 943
NspI RCATGY 2 cut(s) 557, 899
NspV TTCGAA 1 cut(s) 414
PciI ACATGT 1 cut(s) 895
PciSI GCTCTTC 1 cut(s) 735
PcsI WCGNNNNNNNCGW 1 cut(s) 375
PctI GAATGC 2 cut(s) 5, 695
PfeI GAWTC 3 cut(s) 372, 434, 736
PflMI CCANNNNNTGG 1 cut(s) 349
PleI GAGTC 4 cut(s) 33, 125, 236, 388
PpsI GAGTC 4 cut(s) 33, 125, 236, 388
PscI ACATGT 1 cut(s) 895
Psp6I CCWGG 2 cut(s) 807, 961
PspEI GGTNACC 1 cut(s) 865
PspGI CCWGG 2 cut(s) 807, 961
PspN4I GGNNCC 3 cut(s) 334, 388, 495
PspPI GGNCC 2 cut(s) 89, 333
PstNI CAGNNNCTG 2 cut(s) 716, 1055
PvuII CAGCTG 1 cut(s) 713
RsaI GTAC 1 cut(s) 399
RsaNI GTAC 1 cut(s) 398
RseI CAYNNNNRTG 2 cut(s) 230, 267
SapI GCTCTTC 1 cut(s) 735
SaqAI TTAA 1 cut(s) 452
Sau3AI GATC 1 cut(s) 826
Sau96I GGNCC 2 cut(s) 89, 333
SchI GAGTC 4 cut(s) 33, 126, 236, 389
ScrFI CCNGG 3 cut(s) 36, 809, 963
SduI GDGCHC 3 cut(s) 162, 204, 496
SfaNI GCATC 4 cut(s) 460, 831, 856, 1061
SfuI TTCGAA 1 cut(s) 414
SmiMI CAYNNNNRTG 2 cut(s) 230, 267
SpeI ACTAGT 1 cut(s) 703
Sse9I AATT 7 cut(s) 447, 504, 537, 678, 744, 796, 875
SspMI CTAG 4 cut(s) 621, 704, 815, 923
StyD4I CCNGG 3 cut(s) 34, 807, 961
TaaI ACNGT 2 cut(s) 79, 124
TaiI ACGT 2 cut(s) 66, 909
TaqI TCGA 2 cut(s) 414, 432
TasI AATT 7 cut(s) 447, 504, 537, 678, 744, 796, 875
TauI GCSGC 6 cut(s) 20, 90, 251, 515, 1061, 1064
TfiI GAWTC 3 cut(s) 372, 434, 736
Tru1I TTAA 1 cut(s) 452
Tru9I TTAA 1 cut(s) 452
TscAI CASTG 3 cut(s) 317, 778, 955
TseFI GTSAC 4 cut(s) 118, 124, 172, 943
TseI GCWGC 7 cut(s) 51, 710, 713, 716, 844, 995, 1049
Tsp45I GTSAC 4 cut(s) 118, 124, 172, 943
TspDTI ATGAA 1 cut(s) 71
TspGWI ACGGA 1 cut(s) 279
TspRI CASTG 3 cut(s) 317, 778, 955
Van91I CCANNNNNTGG 1 cut(s) 349
VneI GTGCAC 1 cut(s) 200
XapI RAATTY 3 cut(s) 447, 796, 875
XceI RCATGY 2 cut(s) 557, 899
XcmI CCANNNNNNNNNTGG 1 cut(s) 830
XmiI GTMKAC 2 cut(s) 81, 927
XspI CTAG 4 cut(s) 621, 704, 815, 923
ZraI GACGTC 1 cut(s) 907
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.