Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0006569

Physical Location & Seq

Genomic Coordinates Reverse (-)

52046829 .. 52048389

Gene Structure 1561 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG255800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCATTCACGGCCGCTGCTTTCGTCTCCCCGCCCGGACTTGTCGTCCGCTGCATGAACAACGTGCCTGACAGCACAGTCTACGGCGGCCCAAAGTCGCAAAGCCCAGACCGGAGAGTCACCGTCACTCAAATAAAGCAGAAGCACAGCAAGGGCGAGCCCATCACCGCCGTCACCGCCTACGACTACCCCTCGGCGGTTTTAGGCCACAAGGAAGGAATGTGGCTAATTGTGGAGACAGCGCTGGCTTTGCAAGAAGCCGGGTGCTTTGCAATTGTATTGGAATGCGTGCCACCACTAGTGGCAGCTGCTGCAACATCTGCTCTTCAGATTCCTACAATTGGCATTGGAGCAGGGTCTTTTTGCAGTGGGCAGGTGCTAGTTTACCATGATCTTCTTGGAATGATGCAGCACCCACGTCATGCAAAGGTTACCCCAAAATTCTGTAAGCAATATGCACATGTTGGAAACGTCATCAACAAAGCTCTAGTAGACTACAAGGAAGAAGTCACCAATGGTGCGTTTCCAGGCGCTTTCCATAGCCCATATAAAATCAATGCTGCTGATGTTGATGGCTTTGTTAGTGAGTTAGGAAGGATGGGTTTGGACAAGGCAGCATCTGCGGCGGCTGAAGTAGCTGACAAGAATAATACAAGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003864 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006575 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0015939 GO:0015940 GO:0016053 GO:0016740 GO:0016741 GO:0016742 GO:0019752 GO:0032787 GO:0034641 GO:0042364 GO:0042398 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0050897 GO:0051186 GO:0051188 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 ko01110 map00770 map01100 map01110

Pfam Domains

Protein Families

Pantoate_transf

Protein Analysis

220

Amino Acids

23.24

Weight (kDa)

7.67

Isoelectric Point (pI)

31.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pantoate_transf	PF02548	76 - 177	1.2e-35	Ketopantoate hydroxymethyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46110 AT3G61530 AT3G61530
fragaria_vesca	FvH4_7g15370
malus_domestica	MD07G1131200.v1.1
prunus_persica	Prupe.2G177600_v2.0.a1
pyrus_communis	pycom01g10060 pycom07g12820
rosa_chinensis	RchiOBHm_Chr1g0357691 RchiOBHm_Chr1g0357711
rosa_laevigata	RLG00000028006
rosa_multiflora	Rmu_co7965146.1_g000001 Rmu_co8050058.1_g000001 Rmu_sc0008574.1_g000001 Rmu_ssc0000399.1_g000025 Rmu_ssc0000425.1_g000003
rosa_roxburghii	Rroxscaffold_4G00298580 Rroxscaffold_4G00298590
rosa_rugosa	Rorug01G0257700
rosa_samantha	Rh1AG271800 Rh1BG239000 Rh1CG255700 Rh1CG255800 Rh1DG267400
rosa_wichuraiana	Rw1G024240 Rw1G024250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	364
AasI	GACNNNNNNGTC	2 cut(s)	77, 116
Acc36I	ACCTGC	1 cut(s)	364
AccI	GTMKAC	2 cut(s)	81, 492
AciI	CCGC	9 cut(s)	15, 32, 49, 87, 168, 177, 197, 623, 626
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	440
AcuI	CTGAAG	2 cut(s)	311, 651
AfeI	AGCGCT	1 cut(s)	243
AfiI	CCNNNNNNNGG	2 cut(s)	196, 341
AflIII	ACRYGT	1 cut(s)	460
AhdI	GACNNNNNGTC	1 cut(s)	44
AhlI	ACTAGT	1 cut(s)	298
AjiI	CACGTC	1 cut(s)	419
AjnI	CCWGG	1 cut(s)	526
AluBI	AGCT	3 cut(s)	308, 485, 638
AluI	AGCT	3 cut(s)	308, 485, 638
Alw26I	GTCTC	2 cut(s)	31, 230
AlwNI	CAGNNNCTG	2 cut(s)	311, 620
Aor51HI	AGCGCT	1 cut(s)	243
AoxI	GGCC	3 cut(s)	12, 88, 205
ApeKI	GCWGC	8 cut(s)	17, 51, 305, 308, 311, 409, 560, 614
ApoI	RAATTY	1 cut(s)	440
AspLEI	GCGC	2 cut(s)	244, 533
AspS9I	GGNCC	1 cut(s)	89
AsuC2I	CCSGG	2 cut(s)	36, 262
AsuHPI	GGTGA	4 cut(s)	112, 157, 166, 502
BanII	GRGCYC	1 cut(s)	162
BbvI	GCAGC	8 cut(s)	4, 38, 295, 298, 317, 421, 547, 626
BccI	CCATC	3 cut(s)	170, 566, 592
BceAI	ACGGC	3 cut(s)	27, 100, 155
BciT130I	CCWGG	1 cut(s)	528
BcnI	CCSGG	2 cut(s)	36, 262
BcoDI	GTCTC	2 cut(s)	31, 230
BcuI	ACTAGT	1 cut(s)	298
BfaI	CTAG	3 cut(s)	299, 380, 488
BfoI	RGCGCY	2 cut(s)	245, 534
BfuAI	ACCTGC	1 cut(s)	364
Bme1390I	CCNGG	3 cut(s)	36, 262, 528
BmeRI	GACNNNNNGTC	1 cut(s)	44
BmgBI	CACGTC	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	89
BmrFI	CCNGG	3 cut(s)	36, 262, 528
BmsI	GCATC	2 cut(s)	396, 626
BpuMI	CCSGG	2 cut(s)	36, 262
BsaJI	CCNNGG	1 cut(s)	192
BsaWI	WCCGGW	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 341
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	1 cut(s)	603
BseLI	CCNNNNNNNGG	2 cut(s)	196, 341
BseX3I	CGGCCG	1 cut(s)	12
BseXI	GCAGC	8 cut(s)	4, 38, 295, 298, 317, 421, 547, 626
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	3 cut(s)	14, 90, 207
BsiEI	CGRYCG	1 cut(s)	15
BsiSI	CCGG	3 cut(s)	36, 112, 261
BslI	CCNNNNNNNGG	2 cut(s)	196, 341
BsmAI	GTCTC	2 cut(s)	31, 230
BsmBI	CGTCTC	1 cut(s)	31
BsmI	GAATGC	2 cut(s)	5, 290
BsnI	GGCC	3 cut(s)	14, 90, 207
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp143I	GATC	1 cut(s)	391
BspACI	CCGC	9 cut(s)	15, 32, 49, 87, 168, 177, 197, 623, 626
BspANI	GGCC	3 cut(s)	14, 90, 207
BspMI	ACCTGC	1 cut(s)	364
BspQI	GCTCTTC	1 cut(s)	330
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	1 cut(s)	391
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	2 cut(s)	79, 124
Bst6I	CTCTTC	1 cut(s)	330
BstAPI	GCANNNNNTGC	3 cut(s)	311, 320, 620
BstC8I	GCNNGC	3 cut(s)	158, 246, 290
BstEII	GGTNACC	1 cut(s)	430
BstF5I	GGATG	1 cut(s)	603
BstH2I	RGCGCY	2 cut(s)	245, 534
BstHHI	GCGC	2 cut(s)	244, 533
BstKTI	GATC	1 cut(s)	394
BstMAI	GTCTC	2 cut(s)	31, 230
BstMBI	GATC	1 cut(s)	391
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 176, 250, 311, 320, 620, 623, 635
BstNI	CCWGG	1 cut(s)	528
BstNSI	RCATGY	1 cut(s)	464
BstPI	GGTNACC	1 cut(s)	430
BstSCI	CCNGG	3 cut(s)	34, 260, 526
BstV1I	GCAGC	8 cut(s)	4, 38, 295, 298, 317, 421, 547, 626
BstZI	CGGCCG	1 cut(s)	12
BsuRI	GGCC	3 cut(s)	14, 90, 207
BtrI	CACGTC	1 cut(s)	419
BtsCI	GGATG	1 cut(s)	603
BtsI	GCAGTG	1 cut(s)	373
BtsIMutI	CAGTG	1 cut(s)	373
BveI	ACCTGC	1 cut(s)	364
Cac8I	GCNNGC	3 cut(s)	158, 246, 290
CaiI	CAGNNNCTG	2 cut(s)	311, 620
CfoI	GCGC	2 cut(s)	244, 533
Cfr13I	GGNCC	1 cut(s)	89
CviAII	CATG	4 cut(s)	55, 389, 422, 461
DpnI	GATC	1 cut(s)	393
DpnII	GATC	1 cut(s)	391
DrdI	GACNNNNNNGTC	2 cut(s)	77, 116
DriI	GACNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	2 cut(s)	77, 116
EaeI	YGGCCR	1 cut(s)	12
EagI	CGGCCG	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	330
Eam1105I	GACNNNNNGTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	330
EclXI	CGGCCG	1 cut(s)	12
Eco24I	GRGCYC	1 cut(s)	162
Eco47III	AGCGCT	1 cut(s)	243
Eco52I	CGGCCG	1 cut(s)	12
Eco57I	CTGAAG	2 cut(s)	311, 651
Eco91I	GGTNACC	1 cut(s)	430
EcoO65I	GGTNACC	1 cut(s)	430
EcoRII	CCWGG	1 cut(s)	526
EcoT38I	GRGCYC	1 cut(s)	162
Esp3I	CGTCTC	1 cut(s)	31
FaeI	CATG	4 cut(s)	58, 392, 425, 464
FaiI	YATR	8 cut(s)	56, 390, 423, 456, 462, 540, 547, 549
FatI	CATG	4 cut(s)	54, 388, 421, 460
FauI	CCCGC	1 cut(s)	39
FblI	GTMKAC	2 cut(s)	81, 492
FokI	GGATG	1 cut(s)	610
FriOI	GRGCYC	1 cut(s)	162
FspBI	CTAG	3 cut(s)	299, 380, 488
GlaI	GCGC	2 cut(s)	243, 532
HaeII	RGCGCY	2 cut(s)	245, 534
HaeIII	GGCC	3 cut(s)	14, 90, 207
HapII	CCGG	3 cut(s)	36, 112, 261
HhaI	GCGC	2 cut(s)	244, 533
Hin1II	CATG	4 cut(s)	58, 392, 425, 464
Hin6I	GCGC	2 cut(s)	242, 531
HinP1I	GCGC	2 cut(s)	242, 531
HinfI	GANTC	2 cut(s)	117, 331
HpaII	CCGG	3 cut(s)	36, 112, 261
HphI	GGTGA	4 cut(s)	112, 157, 166, 502
Hpy166II	GTNNAC	3 cut(s)	82, 385, 493
Hpy188I	TCNGA	1 cut(s)	330
Hpy8I	GTNNAC	3 cut(s)	82, 385, 493
HpyAV	CCTTC	2 cut(s)	209, 588
HpyCH4III	ACNGT	2 cut(s)	79, 124
HpyCH4IV	ACGT	3 cut(s)	63, 418, 471
HpyCH4V	TGCA	8 cut(s)	54, 253, 272, 314, 366, 409, 425, 458
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 176, 250, 311, 320, 620, 623, 635
HpySE526I	ACGT	3 cut(s)	63, 418, 471
Hsp92II	CATG	4 cut(s)	58, 392, 425, 464
HspAI	GCGC	2 cut(s)	242, 531
Kzo9I	GATC	1 cut(s)	391
LguI	GCTCTTC	1 cut(s)	330
LmnI	GCTCC	1 cut(s)	350
Lsp1109I	GCAGC	8 cut(s)	4, 38, 295, 298, 317, 421, 547, 626
LweI	GCATC	2 cut(s)	396, 626
MaeI	CTAG	3 cut(s)	299, 380, 488
MaeII	ACGT	3 cut(s)	63, 418, 471
MaeIII	GTNAC	5 cut(s)	118, 124, 172, 430, 508
MalI	GATC	1 cut(s)	393
MboI	GATC	1 cut(s)	391
MboII	GAAGA	3 cut(s)	317, 386, 515
MfeI	CAATTG	2 cut(s)	273, 339
MhlI	GDGCHC	1 cut(s)	162
MluCI	AATT	4 cut(s)	228, 273, 339, 440
MlyI	GAGTC	1 cut(s)	126
MmeI	TCCRAC	1 cut(s)	445
MnlI	CCTC	1 cut(s)	202
MspA1I	CMGCKG	3 cut(s)	17, 51, 308
MspI	CCGG	3 cut(s)	36, 112, 261
MspR9I	CCNGG	3 cut(s)	36, 262, 528
MunI	CAATTG	2 cut(s)	273, 339
Mva1269I	GAATGC	2 cut(s)	5, 290
MvaI	CCWGG	1 cut(s)	528
MwoI	GCNNNNNNNGC	8 cut(s)	11, 176, 250, 311, 320, 620, 623, 635
NciI	CCSGG	2 cut(s)	36, 262
NdeII	GATC	1 cut(s)	391
NlaIII	CATG	4 cut(s)	58, 392, 425, 464
NmeAIII	GCCGAG	1 cut(s)	173
NmuCI	GTSAC	4 cut(s)	118, 124, 172, 508
NspI	RCATGY	1 cut(s)	464
PaqCI	CACCTGC	1 cut(s)	364
PciI	ACATGT	1 cut(s)	460
PciSI	GCTCTTC	1 cut(s)	330
PctI	GAATGC	2 cut(s)	5, 290
PfeI	GAWTC	1 cut(s)	331
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
PscI	ACATGT	1 cut(s)	460
Psp6I	CCWGG	1 cut(s)	526
PspEI	GGTNACC	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	526
PspPI	GGNCC	1 cut(s)	89
PstNI	CAGNNNCTG	2 cut(s)	311, 620
PvuII	CAGCTG	1 cut(s)	308
SapI	GCTCTTC	1 cut(s)	330
Sau3AI	GATC	1 cut(s)	391
Sau96I	GGNCC	1 cut(s)	89
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	3 cut(s)	36, 262, 528
SduI	GDGCHC	1 cut(s)	162
SetI	ASST	8 cut(s)	66, 310, 378, 421, 432, 474, 487, 640
SfaNI	GCATC	2 cut(s)	396, 626
SpeI	ACTAGT	1 cut(s)	298
Sse9I	AATT	4 cut(s)	228, 273, 339, 440
SsiI	CCGC	9 cut(s)	15, 32, 49, 87, 168, 177, 197, 623, 626
SspMI	CTAG	3 cut(s)	299, 380, 488
StyD4I	CCNGG	3 cut(s)	34, 260, 526
TaaI	ACNGT	2 cut(s)	79, 124
TaiI	ACGT	3 cut(s)	66, 421, 474
TasI	AATT	4 cut(s)	228, 273, 339, 440
TauI	GCSGC	4 cut(s)	17, 90, 626, 629
TfiI	GAWTC	1 cut(s)	331
TscAI	CASTG	1 cut(s)	373
TseFI	GTSAC	4 cut(s)	118, 124, 172, 508
TseI	GCWGC	8 cut(s)	17, 51, 305, 308, 311, 409, 560, 614
Tsp45I	GTSAC	4 cut(s)	118, 124, 172, 508
TspDTI	ATGAA	1 cut(s)	71
TspRI	CASTG	1 cut(s)	373
XapI	RAATTY	1 cut(s)	440
XceI	RCATGY	1 cut(s)	464
XcmI	CCANNNNNNNNNTGG	1 cut(s)	395
XmiI	GTMKAC	2 cut(s)	81, 492
XspI	CTAG	3 cut(s)	299, 380, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.