Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006569

Physical Location & Seq

Genomic Coordinates Forward (+)

14161448 .. 14163251

Gene Structure 1804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g12820.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGCTTGTTCACTGCCGAGCTGTGGCGCGTGGCGCCAAGCGGCCGCTTTTGGTTGGGGACTTGCCGTTTGGGTTCTATGAGTCTAGCTCCAATCAGGCTGTCGATACGGCGGTGAGGGTTTTAAAGGAGGGAGGAATGGATGCGATTAAATTGGAAGGAGGGGCACCTTCGAGGATTACTGCGGCAAAATCTATCGTTGAAGCTGGAATTGCCGTGATGGGGCATGTGGGACTTACTCCCCAGGCCATTAGTGTTCTTGGGGGTTTTAGGCCCCAGGGAAGGAATGTTGCTAGTGCTGTTAAGGTTGTGGAGACAGCCCTGGCTCTGCAAGAAGCTGGGTGTTTTTCTGTTGTTTTAGAATGCGTACCTCCACCGGTGGCTGCTGCTGCAACGTCTGCTCTTCAGATTCCTACCATTGGCATTGGTGCAGGGCCTTTCTGCAGTGGGCAGGTGCTAGTTTACCATGATCTTCTTGGAATGATGCAACATCCACATCATGCCAAGGTTACCCCGAAATTCTGCAAGCAGTTTGCACATGTTGGAGAAGTCATCAACAAAGCTCTAGTAGAATACAAGGAAGAAGTGACTAATGGTACGTTTCCTGGTGCTGCACACAGCCCATATAAAATCAGTGCTGCTGATGTTGATGGCTTTTCAAGTGAGTTACAAAAGTTGGGTTTCGACAAGGCAGCATCTGCAGCAGCTGAAGCAGCTGAGAAGATCAATAGAGGCGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003864 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006575 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0015939 GO:0015940 GO:0016053 GO:0016740 GO:0016741 GO:0016742 GO:0019752 GO:0032787 GO:0034641 GO:0042364 GO:0042398 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0050897 GO:0051186 GO:0051188 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 ko01110 map00770 map01100 map01110

Pfam Domains

Protein Families

Pantoate_transf

Protein Analysis

246

Amino Acids

25.41

Weight (kDa)

7.08

Isoelectric Point (pI)

27.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46110 AT3G61530 AT3G61530
fragaria_vesca	FvH4_7g15370
malus_domestica	MD07G1131200.v1.1
prunus_persica	Prupe.2G177600_v2.0.a1
pyrus_communis	pycom01g10060 pycom07g12820
rosa_chinensis	RchiOBHm_Chr1g0357691 RchiOBHm_Chr1g0357711
rosa_laevigata	RLG00000028006
rosa_multiflora	Rmu_co7965146.1_g000001 Rmu_co8050058.1_g000001 Rmu_sc0008574.1_g000001 Rmu_ssc0000399.1_g000025 Rmu_ssc0000425.1_g000003
rosa_roxburghii	Rroxscaffold_4G00298580 Rroxscaffold_4G00298590
rosa_rugosa	Rorug01G0257700
rosa_samantha	Rh1AG271800 Rh1BG239000 Rh1CG255700 Rh1CG255800 Rh1DG267400
rosa_wichuraiana	Rw1G024240 Rw1G024250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	439
Acc36I	ACCTGC	1 cut(s)	439
AccB1I	GGYRCC	2 cut(s)	32, 163
AccII	CGCG	1 cut(s)	28
AciI	CCGC	4 cut(s)	40, 44, 110, 182
AcoI	YGGCCR	1 cut(s)	41
AcsI	RAATTY	1 cut(s)	515
AcuI	CTGAAG	2 cut(s)	386, 726
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	2 cut(s)	366, 595
AfiI	CCNNNNNNNGG	4 cut(s)	22, 219, 279, 416
AflIII	ACRYGT	1 cut(s)	535
AgeI	ACCGGT	1 cut(s)	373
AgsI	TTSAA	2 cut(s)	200, 657
AjnI	CCWGG	4 cut(s)	240, 273, 318, 601
AluBI	AGCT	7 cut(s)	20, 87, 203, 335, 560, 704, 713
AluI	AGCT	7 cut(s)	20, 87, 203, 335, 560, 704, 713
Alw26I	GTCTC	1 cut(s)	305
AlwNI	CAGNNNCTG	2 cut(s)	695, 704
AoxI	GGCC	4 cut(s)	41, 243, 269, 431
ApeKI	GCWGC	9 cut(s)	380, 383, 386, 608, 635, 689, 698, 701, 710
ApoI	RAATTY	1 cut(s)	515
ArsI	GACNNNNNNTTYG	2 cut(s)	50, 82
AsiGI	ACCGGT	1 cut(s)	373
AspLEI	GCGC	2 cut(s)	28, 35
AspS9I	GGNCC	2 cut(s)	270, 431
AsuHPI	GGTGA	1 cut(s)	124
BaeGI	GKGCMC	1 cut(s)	166
BaeI	ACNNNNGTAYC	2 cut(s)	96, 129
BanI	GGYRCC	2 cut(s)	32, 163
BbvI	GCAGC	9 cut(s)	367, 370, 373, 595, 622, 701, 710, 713, 722
BccI	CCATC	2 cut(s)	211, 641
BceAI	ACGGC	3 cut(s)	49, 123, 197
BciT130I	CCWGG	4 cut(s)	242, 275, 320, 603
BcoDI	GTCTC	1 cut(s)	305
BfaI	CTAG	4 cut(s)	84, 291, 455, 563
BfmI	CTRYAG	2 cut(s)	439, 696
BfoI	RGCGCY	1 cut(s)	36
BfuAI	ACCTGC	1 cut(s)	439
Bme1390I	CCNGG	4 cut(s)	242, 275, 320, 603
BmgT120I	GGNCC	2 cut(s)	270, 431
BmiI	GGNNCC	3 cut(s)	34, 165, 272
BmrFI	CCNGG	4 cut(s)	242, 275, 320, 603
BmsI	GCATC	3 cut(s)	130, 471, 701
BplI	GAGNNNNNCTC	2 cut(s)	71, 103
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	5 cut(s)	240, 273, 274, 318, 501
BsaWI	WCCGGW	1 cut(s)	373
Bsc4I	CCNNNNNNNGG	4 cut(s)	22, 219, 279, 416
Bse118I	RCCGGY	1 cut(s)	373
BseBI	CCWGG	4 cut(s)	242, 275, 320, 603
BseDI	CCNNGG	5 cut(s)	240, 273, 274, 318, 501
BseGI	GGATG	2 cut(s)	145, 487
BseLI	CCNNNNNNNGG	4 cut(s)	22, 219, 279, 416
BseMII	CTCAG	1 cut(s)	705
BseSI	GKGCMC	1 cut(s)	166
BseX3I	CGGCCG	1 cut(s)	41
BseXI	GCAGC	9 cut(s)	367, 370, 373, 595, 622, 701, 710, 713, 722
BseYI	CCCAGC	1 cut(s)	335
BsgI	GTGCAG	2 cut(s)	447, 594
Bsh1236I	CGCG	1 cut(s)	28
Bsh1285I	CGRYCG	1 cut(s)	44
BshFI	GGCC	4 cut(s)	43, 245, 271, 433
BshNI	GGYRCC	2 cut(s)	32, 163
BshTI	ACCGGT	1 cut(s)	373
BsiEI	CGRYCG	1 cut(s)	44
BsiSI	CCGG	1 cut(s)	374
BslFI	GGGAC	2 cut(s)	71, 243
BslI	CCNNNNNNNGG	4 cut(s)	22, 219, 279, 416
BsmAI	GTCTC	1 cut(s)	305
BsmFI	GGGAC	2 cut(s)	71, 243
BsmI	GAATGC	1 cut(s)	365
BsnI	GGCC	4 cut(s)	43, 245, 271, 433
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	2 cut(s)	466, 720
BspACI	CCGC	4 cut(s)	40, 44, 110, 182
BspANI	GGCC	4 cut(s)	43, 245, 271, 433
BspCNI	CTCAG	1 cut(s)	706
BspFNI	CGCG	1 cut(s)	28
BspLI	GGNNCC	3 cut(s)	34, 165, 272
BspMAI	CTGCAG	2 cut(s)	443, 700
BspMI	ACCTGC	1 cut(s)	439
BspQI	GCTCTTC	1 cut(s)	405
BspT107I	GGYRCC	2 cut(s)	32, 163
BsrFI	RCCGGY	1 cut(s)	373
BssAI	RCCGGY	1 cut(s)	373
BssECI	CCNNGG	5 cut(s)	240, 273, 274, 318, 501
BssMI	GATC	2 cut(s)	466, 720
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	501
Bst2UI	CCWGG	4 cut(s)	242, 275, 320, 603
Bst6I	CTCTTC	1 cut(s)	405
BstACI	GRCGYC	1 cut(s)	33
BstAPI	GCANNNNNTGC	2 cut(s)	395, 695
BstC8I	GCNNGC	1 cut(s)	524
BstDEI	CTNAG	1 cut(s)	714
BstEII	GGTNACC	1 cut(s)	505
BstF5I	GGATG	2 cut(s)	145, 487
BstFNI	CGCG	1 cut(s)	28
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	2 cut(s)	28, 35
BstKTI	GATC	2 cut(s)	469, 723
BstMAI	GTCTC	1 cut(s)	305
BstMBI	GATC	2 cut(s)	466, 720
BstMCI	CGRYCG	1 cut(s)	44
BstMWI	GCNNNNNNNGC	8 cut(s)	32, 209, 386, 395, 695, 698, 707, 710
BstNI	CCWGG	4 cut(s)	242, 275, 320, 603
BstNSI	RCATGY	2 cut(s)	227, 539
BstPI	GGTNACC	1 cut(s)	505
BstSCI	CCNGG	4 cut(s)	240, 273, 318, 601
BstSFI	CTRYAG	2 cut(s)	439, 696
BstSLI	GKGCMC	1 cut(s)	166
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	9 cut(s)	367, 370, 373, 595, 622, 701, 710, 713, 722
BstZI	CGGCCG	1 cut(s)	41
BsuRI	GGCC	4 cut(s)	43, 245, 271, 433
BtsCI	GGATG	2 cut(s)	145, 487
BtsI	GCAGTG	2 cut(s)	10, 448
BtsIMutI	CAGTG	3 cut(s)	10, 448, 637
BveI	ACCTGC	1 cut(s)	439
Cac8I	GCNNGC	1 cut(s)	524
CaiI	CAGNNNCTG	2 cut(s)	695, 704
CciNI	GCGGCCGC	1 cut(s)	41
CfoI	GCGC	2 cut(s)	28, 35
Cfr10I	RCCGGY	1 cut(s)	373
Cfr13I	GGNCC	2 cut(s)	270, 431
Csp6I	GTAC	2 cut(s)	365, 594
CspAI	ACCGGT	1 cut(s)	373
CviAII	CATG	4 cut(s)	224, 464, 497, 536
CviQI	GTAC	2 cut(s)	365, 594
DdeI	CTNAG	1 cut(s)	714
DinI	GGCGCC	1 cut(s)	34
DpnI	GATC	2 cut(s)	468, 722
DpnII	GATC	2 cut(s)	466, 720
DraI	TTTAAA	1 cut(s)	123
EaeI	YGGCCR	1 cut(s)	41
EagI	CGGCCG	1 cut(s)	41
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
EclXI	CGGCCG	1 cut(s)	41
Eco130I	CCWWGG	1 cut(s)	501
Eco52I	CGGCCG	1 cut(s)	41
Eco57I	CTGAAG	2 cut(s)	386, 726
Eco91I	GGTNACC	1 cut(s)	505
EcoO109I	RGGNCCY	2 cut(s)	270, 431
EcoO65I	GGTNACC	1 cut(s)	505
EcoRII	CCWGG	4 cut(s)	240, 273, 318, 601
EcoT14I	CCWWGG	1 cut(s)	501
EgeI	GGCGCC	1 cut(s)	34
EheI	GGCGCC	1 cut(s)	34
ErhI	CCWWGG	1 cut(s)	501
FaeI	CATG	4 cut(s)	227, 467, 500, 539
FaiI	YATR	7 cut(s)	78, 225, 465, 498, 537, 622, 624
FaqI	GGGAC	2 cut(s)	71, 243
FatI	CATG	4 cut(s)	223, 463, 496, 535
FokI	GGATG	2 cut(s)	152, 474
FspBI	CTAG	4 cut(s)	84, 291, 455, 563
GlaI	GCGC	2 cut(s)	27, 34
GsaI	CCCAGC	1 cut(s)	339
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	4 cut(s)	43, 245, 271, 433
HapII	CCGG	1 cut(s)	374
HhaI	GCGC	2 cut(s)	28, 35
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	4 cut(s)	227, 467, 500, 539
Hin6I	GCGC	2 cut(s)	26, 33
HinP1I	GCGC	2 cut(s)	26, 33
HinfI	GANTC	2 cut(s)	80, 406
HpaII	CCGG	1 cut(s)	374
HphI	GGTGA	1 cut(s)	124
Hpy166II	GTNNAC	2 cut(s)	10, 460
Hpy188I	TCNGA	1 cut(s)	405
Hpy8I	GTNNAC	2 cut(s)	10, 460
HpyAV	CCTTC	3 cut(s)	149, 177, 273
HpyCH4IV	ACGT	2 cut(s)	392, 596
HpyCH4V	TGCA	9 cut(s)	328, 389, 428, 441, 484, 522, 533, 611, 698
HpyF10VI	GCNNNNNNNGC	8 cut(s)	32, 209, 386, 395, 695, 698, 707, 710
HpyF3I	CTNAG	1 cut(s)	714
HpySE526I	ACGT	2 cut(s)	392, 596
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	4 cut(s)	227, 467, 500, 539
HspAI	GCGC	2 cut(s)	26, 33
KasI	GGCGCC	1 cut(s)	32
Kzo9I	GATC	2 cut(s)	466, 720
LguI	GCTCTTC	1 cut(s)	405
LmnI	GCTCC	1 cut(s)	92
Lsp1109I	GCAGC	9 cut(s)	367, 370, 373, 595, 622, 701, 710, 713, 722
LweI	GCATC	3 cut(s)	130, 471, 701
MaeI	CTAG	4 cut(s)	84, 291, 455, 563
MaeII	ACGT	2 cut(s)	392, 596
MaeIII	GTNAC	3 cut(s)	505, 583, 663
MalI	GATC	2 cut(s)	468, 722
MboI	GATC	2 cut(s)	466, 720
MboII	GAAGA	4 cut(s)	392, 461, 590, 730
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	3 cut(s)	149, 207, 515
Mly113I	GGCGCC	1 cut(s)	33
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	1 cut(s)	520
MnlI	CCTC	7 cut(s)	108, 121, 125, 152, 165, 378, 722
MseI	TTAA	3 cut(s)	122, 147, 300
MspA1I	CMGCKG	2 cut(s)	704, 713
MspI	CCGG	1 cut(s)	374
MspR9I	CCNGG	4 cut(s)	242, 275, 320, 603
Mva1269I	GAATGC	1 cut(s)	365
MvaI	CCWGG	4 cut(s)	242, 275, 320, 603
MvnI	CGCG	1 cut(s)	28
MwoI	GCNNNNNNNGC	8 cut(s)	32, 209, 386, 395, 695, 698, 707, 710
NarI	GGCGCC	1 cut(s)	33
NdeII	GATC	2 cut(s)	466, 720
NlaIII	CATG	4 cut(s)	227, 467, 500, 539
NlaIV	GGNNCC	3 cut(s)	34, 165, 272
NmeAIII	GCCGAG	1 cut(s)	41
NmuCI	GTSAC	1 cut(s)	583
NotI	GCGGCCGC	1 cut(s)	41
NspI	RCATGY	2 cut(s)	227, 539
PaqCI	CACCTGC	1 cut(s)	439
PasI	CCCWGGG	1 cut(s)	274
PciI	ACATGT	1 cut(s)	535
PciSI	GCTCTTC	1 cut(s)	405
PctI	GAATGC	1 cut(s)	365
PfeI	GAWTC	1 cut(s)	406
PinAI	ACCGGT	1 cut(s)	373
PleI	GAGTC	1 cut(s)	88
PluTI	GGCGCC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	88
PscI	ACATGT	1 cut(s)	535
Psp6I	CCWGG	4 cut(s)	240, 273, 318, 601
PspEI	GGTNACC	1 cut(s)	505
PspFI	CCCAGC	1 cut(s)	335
PspGI	CCWGG	4 cut(s)	240, 273, 318, 601
PspN4I	GGNNCC	3 cut(s)	34, 165, 272
PspPI	GGNCC	2 cut(s)	270, 431
PstI	CTGCAG	2 cut(s)	443, 700
PstNI	CAGNNNCTG	2 cut(s)	695, 704
PvuII	CAGCTG	2 cut(s)	704, 713
RsaI	GTAC	2 cut(s)	366, 595
RsaNI	GTAC	2 cut(s)	365, 594
SapI	GCTCTTC	1 cut(s)	405
SaqAI	TTAA	3 cut(s)	122, 147, 300
Sau3AI	GATC	2 cut(s)	466, 720
Sau96I	GGNCC	2 cut(s)	270, 431
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	4 cut(s)	242, 275, 320, 603
SduI	GDGCHC	1 cut(s)	166
SfaNI	GCATC	3 cut(s)	130, 471, 701
SfcI	CTRYAG	2 cut(s)	439, 696
SfoI	GGCGCC	1 cut(s)	34
SgrAI	CRCCGGYG	1 cut(s)	373
Sse9I	AATT	3 cut(s)	149, 207, 515
SsiI	CCGC	4 cut(s)	40, 44, 110, 182
SspDI	GGCGCC	1 cut(s)	32
SspMI	CTAG	4 cut(s)	84, 291, 455, 563
StyD4I	CCNGG	4 cut(s)	240, 273, 318, 601
StyI	CCWWGG	1 cut(s)	501
TaiI	ACGT	2 cut(s)	395, 599
TaqI	TCGA	3 cut(s)	102, 170, 681
TasI	AATT	3 cut(s)	149, 207, 515
TauI	GCSGC	3 cut(s)	43, 46, 185
TfiI	GAWTC	1 cut(s)	406
Tru1I	TTAA	3 cut(s)	122, 147, 300
Tru9I	TTAA	3 cut(s)	122, 147, 300
TscAI	CASTG	3 cut(s)	17, 448, 637
TseFI	GTSAC	1 cut(s)	583
TseI	GCWGC	9 cut(s)	380, 383, 386, 608, 635, 689, 698, 701, 710
Tsp45I	GTSAC	1 cut(s)	583
TspRI	CASTG	3 cut(s)	17, 448, 637
XapI	RAATTY	1 cut(s)	515
XceI	RCATGY	2 cut(s)	227, 539
XcmI	CCANNNNNNNNNTGG	1 cut(s)	470
XspI	CTAG	4 cut(s)	84, 291, 455, 563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.