Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0006569

Physical Location & Seq

Genomic Coordinates Reverse (-)

50015540 .. 50018439

Gene Structure 2900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG271800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCATTCATGGCCGCCGTTTCACGCGCCGCGCTCTTTTCCCGTGCCGGAATCATCCGCTCCATGAGCAACATCCCCGAGAACACCGTCTACGGCGGCCCAAAGTCCCAGAGCCCGGACCACCGAGTCACCGTCACCCAAATCAAGCAGAAGCACAACAAGGGCGACCCCATCACCATGGTCACCGCCTACGACTACCCCTCCGCGGTCCACCTCGACTCCGCCGGAATTGACATTGCCTTGGTCGGCGACTCCGCTGCCATGGTCGTGCACGGCTATGACACCACCCTCCCTATAACGCTTGAAGAGATGCTCGTCCACTGCCGAGCTGTGGCGCGTGGGGCCAAGCGCCCGCTTTTGGTTGGGGACTTGCCGTTTGGATTCTACGAATCTAGCTCCATTCAGGCTATCGATACAGCGGTGAGGATTTTGAAGGAAGGAGCAATGGATGCAATAAAATTGGAAGGAGGGGCACCTTCGAGAATTACTGCGGCAAAATCTATTGTTGAGGCTGGAATTGCTGTGATGGGGCATGTGGGACTTACTCCGCAGGCGATTAGCGTTCTCGGGGGGTTTAGGCCTCAAGGAAGGAATGTTGCTAGTGCTGTAAAGGTTGTGGAGACTGCATTGGCTTTGCAAGAAGCTGGGTGCTTTTCTGTTGTTTTGGAATGTGTACCGCCACTTGTGGCGGCTGCAGCAACGTCAGCTCTTCAGATTCCTACAATTGGCATTGGAGCAGGGCCTTTTTGCAGTGGACAGGTCAGTTCTTTATGTAGCCATGTTGATTATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003864 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006575 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0015939 GO:0015940 GO:0016053 GO:0016740 GO:0016741 GO:0016742 GO:0019752 GO:0032787 GO:0034641 GO:0042364 GO:0042398 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0050897 GO:0051186 GO:0051188 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 ko01110 map00770 map01100 map01110

Pfam Domains

Protein Families

Pantoate_transf

Protein Analysis

264

Amino Acids

27.34

Weight (kDa)

6.65

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pantoate_transf	PF02548	42 - 254	8e-87	Ketopantoate hydroxymethyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46110 AT3G61530 AT3G61530
fragaria_vesca	FvH4_7g15370
malus_domestica	MD07G1131200.v1.1
prunus_persica	Prupe.2G177600_v2.0.a1
pyrus_communis	pycom01g10060 pycom07g12820
rosa_chinensis	RchiOBHm_Chr1g0357691 RchiOBHm_Chr1g0357711
rosa_laevigata	RLG00000028006
rosa_multiflora	Rmu_co7965146.1_g000001 Rmu_co8050058.1_g000001 Rmu_sc0008574.1_g000001 Rmu_ssc0000399.1_g000025 Rmu_ssc0000425.1_g000003
rosa_roxburghii	Rroxscaffold_4G00298580 Rroxscaffold_4G00298590
rosa_rugosa	Rorug01G0257700
rosa_samantha	Rh1AG271800 Rh1BG239000 Rh1CG255700 Rh1CG255800 Rh1DG267400
rosa_wichuraiana	Rw1G024240 Rw1G024250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	125
AccB1I	GGYRCC	1 cut(s)	472
AccBSI	CCGCTC	1 cut(s)	60
AccI	GTMKAC	1 cut(s)	90
AccII	CGCG	4 cut(s)	27, 32, 206, 337
AcoI	YGGCCR	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	695
AfaI	GTAC	1 cut(s)	675
AfiI	CCNNNNNNNGG	5 cut(s)	115, 205, 331, 358, 725
AgsI	TTSAA	2 cut(s)	305, 433
AluBI	AGCT	4 cut(s)	329, 396, 644, 707
AluI	AGCT	4 cut(s)	329, 396, 644, 707
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	1 cut(s)	614
Alw44I	GTGCAC	1 cut(s)	269
Ama87I	CYCGRG	2 cut(s)	77, 566
AoxI	GGCC	5 cut(s)	12, 97, 342, 578, 740
ApaLI	GTGCAC	1 cut(s)	269
ApeKI	GCWGC	3 cut(s)	257, 692, 695
ArsI	GACNNNNNNTTYG	2 cut(s)	359, 391
AspLEI	GCGC	4 cut(s)	29, 34, 337, 351
AspS9I	GGNCC	5 cut(s)	98, 118, 208, 342, 740
AsuC2I	CCSGG	1 cut(s)	116
AsuHPI	GGTGA	5 cut(s)	121, 127, 166, 175, 433
AvaI	CYCGRG	2 cut(s)	77, 566
AvaII	GGWCC	2 cut(s)	118, 208
BaeGI	GKGCMC	2 cut(s)	273, 475
BaeI	ACNNNNGTAYC	2 cut(s)	405, 438
BanI	GGYRCC	1 cut(s)	472
BanII	GRGCYC	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	3 cut(s)	244, 679, 707
BccI	CCATC	2 cut(s)	179, 520
BceAI	ACGGC	4 cut(s)	2, 109, 289, 358
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BcnI	CCSGG	1 cut(s)	116
BcoDI	GTCTC	1 cut(s)	614
BfaI	CTAG	2 cut(s)	393, 600
BfmI	CTRYAG	1 cut(s)	693
BfoI	RGCGCY	1 cut(s)	352
BisI	GCNGC	8 cut(s)	15, 30, 97, 258, 492, 690, 693, 696
BlsI	GCNGC	8 cut(s)	16, 31, 98, 259, 493, 691, 694, 697
Bme1390I	CCNGG	1 cut(s)	116
Bme18I	GGWCC	2 cut(s)	118, 208
BmeT110I	CYCGRG	2 cut(s)	77, 566
BmgT120I	GGNCC	5 cut(s)	98, 118, 208, 342, 740
BmiI	GGNNCC	2 cut(s)	343, 474
BmrFI	CCNGG	1 cut(s)	116
BmsI	GCATC	2 cut(s)	300, 439
BpuEI	CTTGAG	1 cut(s)	567
BpuMI	CCSGG	1 cut(s)	116
Bsa29I	ATCGAT	1 cut(s)	411
BsaJI	CCNNGG	4 cut(s)	177, 204, 240, 261
BsaXI	ACNNNNNCTCC	4 cut(s)	185, 203, 215, 233
Bsc4I	CCNNNNNNNGG	5 cut(s)	115, 205, 331, 358, 725
Bse3DI	GCAATG	2 cut(s)	234, 450
BseCI	ATCGAT	1 cut(s)	411
BseDI	CCNNGG	4 cut(s)	177, 204, 240, 261
BseGI	GGATG	3 cut(s)	54, 72, 454
BseLI	CCNNNNNNNGG	5 cut(s)	115, 205, 331, 358, 725
BseMI	GCAATG	2 cut(s)	234, 450
BseSI	GKGCMC	2 cut(s)	273, 475
BseXI	GCAGC	3 cut(s)	244, 679, 707
BseYI	CCCAGC	1 cut(s)	644
Bsh1236I	CGCG	4 cut(s)	27, 32, 206, 337
BshFI	GGCC	5 cut(s)	14, 99, 344, 580, 742
BshNI	GGYRCC	1 cut(s)	472
BshVI	ATCGAT	1 cut(s)	411
BsiHKAI	GWGCWC	1 cut(s)	273
BsiHKCI	CYCGRG	2 cut(s)	77, 566
BsiSI	CCGG	3 cut(s)	48, 116, 225
BslFI	GGGAC	3 cut(s)	91, 380, 552
BslI	CCNNNNNNNGG	5 cut(s)	115, 205, 331, 358, 725
BsmAI	GTCTC	1 cut(s)	614
BsmFI	GGGAC	3 cut(s)	91, 380, 552
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	5 cut(s)	14, 99, 344, 580, 742
BsoBI	CYCGRG	2 cut(s)	77, 566
Bsp1286I	GDGCHC	3 cut(s)	116, 273, 475
Bsp19I	CCATGG	2 cut(s)	177, 261
BspANI	GGCC	5 cut(s)	14, 99, 344, 580, 742
BspDI	ATCGAT	1 cut(s)	411
BspFNI	CGCG	4 cut(s)	27, 32, 206, 337
BspLI	GGNNCC	2 cut(s)	343, 474
BspMAI	CTGCAG	1 cut(s)	697
BspQI	GCTCTTC	1 cut(s)	714
BspT107I	GGYRCC	1 cut(s)	472
BsrBI	CCGCTC	1 cut(s)	60
BsrDI	GCAATG	2 cut(s)	234, 450
BssECI	CCNNGG	4 cut(s)	177, 204, 240, 261
BssT1I	CCWWGG	3 cut(s)	177, 240, 261
Bst4CI	ACNGT	2 cut(s)	88, 133
Bst6I	CTCTTC	2 cut(s)	300, 714
BstAPI	GCANNNNNTGC	1 cut(s)	449
BstC8I	GCNNGC	2 cut(s)	353, 552
BstDSI	CCRYGG	3 cut(s)	177, 204, 261
BstEII	GGTNACC	1 cut(s)	181
BstF5I	GGATG	3 cut(s)	54, 72, 454
BstFNI	CGCG	4 cut(s)	27, 32, 206, 337
BstH2I	RGCGCY	1 cut(s)	352
BstHHI	GCGC	4 cut(s)	29, 34, 337, 351
BstMAI	GTCTC	1 cut(s)	614
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 66, 341, 449, 518, 695, 704
BstNSI	RCATGY	1 cut(s)	536
BstPI	GGTNACC	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	114
BstSFI	CTRYAG	1 cut(s)	693
BstSLI	GKGCMC	2 cut(s)	273, 475
BstUI	CGCG	4 cut(s)	27, 32, 206, 337
BstV1I	GCAGC	3 cut(s)	244, 679, 707
BstXI	CCANNNNNNTGG	1 cut(s)	178
Bsu15I	ATCGAT	1 cut(s)	411
BsuRI	GGCC	5 cut(s)	14, 99, 344, 580, 742
BsuTUI	ATCGAT	1 cut(s)	411
BtgI	CCRYGG	3 cut(s)	177, 204, 261
BtsCI	GGATG	3 cut(s)	54, 72, 454
BtsI	GCAGTG	2 cut(s)	319, 757
BtsIMutI	CAGTG	2 cut(s)	319, 757
Cac8I	GCNNGC	2 cut(s)	353, 552
CfoI	GCGC	4 cut(s)	29, 34, 337, 351
Cfr13I	GGNCC	5 cut(s)	98, 118, 208, 342, 740
Cfr42I	CCGCGG	1 cut(s)	207
ClaI	ATCGAT	1 cut(s)	411
Csp6I	GTAC	1 cut(s)	674
CviAII	CATG	6 cut(s)	10, 64, 178, 262, 533, 779
CviQI	GTAC	1 cut(s)	674
DrdI	GACNNNNNNGTC	1 cut(s)	125
DseDI	GACNNNNNNGTC	1 cut(s)	125
EaeI	YGGCCR	1 cut(s)	12
Eam1104I	CTCTTC	2 cut(s)	300, 714
EarI	CTCTTC	2 cut(s)	300, 714
EciI	GGCGGA	1 cut(s)	211
Eco130I	CCWWGG	3 cut(s)	177, 240, 261
Eco147I	AGGCCT	1 cut(s)	580
Eco24I	GRGCYC	1 cut(s)	116
Eco47I	GGWCC	2 cut(s)	118, 208
Eco57I	CTGAAG	1 cut(s)	695
Eco88I	CYCGRG	2 cut(s)	77, 566
Eco91I	GGTNACC	1 cut(s)	181
EcoO109I	RGGNCCY	1 cut(s)	740
EcoO65I	GGTNACC	1 cut(s)	181
EcoT14I	CCWWGG	3 cut(s)	177, 240, 261
EcoT38I	GRGCYC	1 cut(s)	116
ErhI	CCWWGG	3 cut(s)	177, 240, 261
FaeI	CATG	6 cut(s)	13, 67, 181, 265, 536, 782
FaqI	GGGAC	3 cut(s)	91, 380, 552
FatI	CATG	6 cut(s)	9, 63, 177, 261, 532, 778
FauI	CCCGC	1 cut(s)	360
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	8 cut(s)	15, 30, 97, 258, 492, 690, 693, 696
FokI	GGATG	3 cut(s)	41, 59, 461
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	8 cut(s)	15, 30, 97, 258, 492, 690, 693, 696
FspBI	CTAG	2 cut(s)	393, 600
GlaI	GCGC	4 cut(s)	28, 33, 336, 350
GluI	GCNGC	8 cut(s)	15, 30, 97, 258, 492, 690, 693, 696
GsaI	CCCAGC	1 cut(s)	648
HaeII	RGCGCY	1 cut(s)	352
HaeIII	GGCC	5 cut(s)	14, 99, 344, 580, 742
HapII	CCGG	3 cut(s)	48, 116, 225
HhaI	GCGC	4 cut(s)	29, 34, 337, 351
Hin1II	CATG	6 cut(s)	13, 67, 181, 265, 536, 782
Hin6I	GCGC	4 cut(s)	27, 32, 335, 349
HinP1I	GCGC	4 cut(s)	27, 32, 335, 349
HinfI	GANTC	7 cut(s)	51, 126, 218, 251, 381, 389, 715
HpaII	CCGG	3 cut(s)	48, 116, 225
HphI	GGTGA	5 cut(s)	121, 127, 166, 175, 433
Hpy166II	GTNNAC	6 cut(s)	91, 211, 271, 319, 674, 755
Hpy188I	TCNGA	1 cut(s)	714
Hpy188III	TCNNGA	1 cut(s)	480
Hpy8I	GTNNAC	6 cut(s)	91, 211, 271, 319, 674, 755
HpyAV	CCTTC	5 cut(s)	427, 431, 458, 486, 582
HpyCH4III	ACNGT	2 cut(s)	88, 133
HpyCH4IV	ACGT	1 cut(s)	701
HpyCH4V	TGCA	6 cut(s)	271, 452, 626, 637, 695, 750
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 66, 341, 449, 518, 695, 704
HpySE526I	ACGT	1 cut(s)	701
Hsp92II	CATG	6 cut(s)	13, 67, 181, 265, 536, 782
HspAI	GCGC	4 cut(s)	27, 32, 335, 349
KspI	CCGCGG	1 cut(s)	207
LguI	GCTCTTC	1 cut(s)	714
LmnI	GCTCC	4 cut(s)	65, 401, 440, 734
Lsp1109I	GCAGC	3 cut(s)	244, 679, 707
LweI	GCATC	2 cut(s)	300, 439
MaeI	CTAG	2 cut(s)	393, 600
MaeII	ACGT	1 cut(s)	701
MaeIII	GTNAC	3 cut(s)	127, 133, 181
MbiI	CCGCTC	1 cut(s)	60
MboII	GAAGA	2 cut(s)	317, 701
MfeI	CAATTG	1 cut(s)	723
MhlI	GDGCHC	3 cut(s)	116, 273, 475
MluCI	AATT	5 cut(s)	228, 458, 483, 516, 723
MlyI	GAGTC	3 cut(s)	135, 212, 245
MnlI	CCTC	7 cut(s)	211, 224, 299, 417, 461, 502, 591
MslI	CAYNNNNRTG	3 cut(s)	176, 266, 276
MspA1I	CMGCKG	3 cut(s)	206, 257, 419
MspI	CCGG	3 cut(s)	48, 116, 225
MspR9I	CCNGG	1 cut(s)	116
MteI	GCGCNGCGC	1 cut(s)	30
MunI	CAATTG	1 cut(s)	723
Mva1269I	GAATGC	1 cut(s)	5
MvnI	CGCG	4 cut(s)	27, 32, 206, 337
MwoI	GCNNNNNNNGC	7 cut(s)	11, 66, 341, 449, 518, 695, 704
NciI	CCSGG	1 cut(s)	116
NcoI	CCATGG	2 cut(s)	177, 261
NlaIII	CATG	6 cut(s)	13, 67, 181, 265, 536, 782
NlaIV	GGNNCC	2 cut(s)	343, 474
NmeAIII	GCCGAG	1 cut(s)	350
NmuCI	GTSAC	3 cut(s)	127, 133, 181
NspI	RCATGY	1 cut(s)	536
PceI	AGGCCT	1 cut(s)	580
PciSI	GCTCTTC	1 cut(s)	714
PctI	GAATGC	1 cut(s)	5
PfeI	GAWTC	4 cut(s)	51, 381, 389, 715
PkrI	GCNGC	8 cut(s)	16, 31, 98, 259, 493, 691, 694, 697
PleI	GAGTC	3 cut(s)	134, 212, 245
PpsI	GAGTC	3 cut(s)	134, 212, 245
PspEI	GGTNACC	1 cut(s)	181
PspFI	CCCAGC	1 cut(s)	644
PspN4I	GGNNCC	2 cut(s)	343, 474
PspPI	GGNCC	5 cut(s)	98, 118, 208, 342, 740
PsrI	GAACNNNNNNTAC	2 cut(s)	74, 106
PstI	CTGCAG	1 cut(s)	697
RsaI	GTAC	1 cut(s)	675
RsaNI	GTAC	1 cut(s)	674
RseI	CAYNNNNRTG	3 cut(s)	176, 266, 276
SacII	CCGCGG	1 cut(s)	207
SapI	GCTCTTC	1 cut(s)	714
SatI	GCNGC	8 cut(s)	15, 30, 97, 258, 492, 690, 693, 696
Sau96I	GGNCC	5 cut(s)	98, 118, 208, 342, 740
SchI	GAGTC	3 cut(s)	135, 212, 245
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	3 cut(s)	116, 273, 475
SetI	ASST	9 cut(s)	216, 331, 398, 478, 615, 646, 704, 709, 762
SfaNI	GCATC	2 cut(s)	300, 439
SfcI	CTRYAG	1 cut(s)	693
Sfr303I	CCGCGG	1 cut(s)	207
SgrBI	CCGCGG	1 cut(s)	207
SinI	GGWCC	2 cut(s)	118, 208
SmiMI	CAYNNNNRTG	3 cut(s)	176, 266, 276
SmlI	CTYRAG	1 cut(s)	582
SmoI	CTYRAG	1 cut(s)	582
Sse9I	AATT	5 cut(s)	228, 458, 483, 516, 723
SseBI	AGGCCT	1 cut(s)	580
SspMI	CTAG	2 cut(s)	393, 600
StuI	AGGCCT	1 cut(s)	580
StyD4I	CCNGG	1 cut(s)	114
StyI	CCWWGG	3 cut(s)	177, 240, 261
TaaI	ACNGT	2 cut(s)	88, 133
TaiI	ACGT	1 cut(s)	704
TaqI	TCGA	3 cut(s)	216, 411, 479
TasI	AATT	5 cut(s)	228, 458, 483, 516, 723
TauI	GCSGC	5 cut(s)	17, 32, 99, 494, 692
TfiI	GAWTC	4 cut(s)	51, 381, 389, 715
TscAI	CASTG	2 cut(s)	326, 757
TseFI	GTSAC	3 cut(s)	127, 133, 181
TseI	GCWGC	3 cut(s)	257, 692, 695
Tsp45I	GTSAC	3 cut(s)	127, 133, 181
TspRI	CASTG	2 cut(s)	326, 757
VneI	GTGCAC	1 cut(s)	269
VpaK11BI	GGWCC	2 cut(s)	118, 208
XceI	RCATGY	1 cut(s)	536
XcmI	CCANNNNNNNNNTGG	1 cut(s)	785
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	2 cut(s)	393, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.