Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000425.1

Orthogroup ID

OG0006569

Physical Location & Seq

Genomic Coordinates Reverse (-)

8409 .. 14223

Gene Structure 5815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000425.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

atggcattcacggccgccgctttcgtctccccgcccggactcgtcgtccgctgcatgaacaacgtgcctgacagcacagtctacggcggcccaaagtcgcaaagcccagaccggagagtcaccgtcactcaaataaagcagaagcacagcaagggcgagcccatcaccgccgtcaccgcctacgactacccctcggcggtgcacttggactcggccgggatagacattgccgtggtcggcgactcggccgcgatggttgttcacggatatgataccactctccccataacgctggaggaaatgctcgtccactgccgagcggtggcgcgtggggccaagcacccgcttttggttgcggacttgccgttcggattctacgagtctagctccattcaggtacaccagcattgtttcgaatatgagcaggctatcgattcagcgatgagaattttaaaggaaggcgcaatggatgcagtaaagttggaagcaggggcaccttcaagaattactgcggcaaaagctattgttgaagcaggaattgctgtgatggggcatgtaggacttactcctcaggctattagcgttctcgggggttttaggccacaaggaaggaatgtggctagtgctgtaaagattgtggagacagcgctggctttgcaagaagccgggtgctttgcaattgtattggaatgcgtgccaccactagtggcagctgctgcaacatctgctcttcagattcctacaattggcattggagcagggtctttttgcagtgggcaggtgctagtttaccatgatcttcttggaatgatgcagcacccacatcatgccaaggttacccctaaattctgtaagcagtttgcacaggttggagatgtcatcaacaaagctcttgtagactacaaggaagaagtgactagtaggacattcccaggcgctgcccacagcccatacaagattaaccctgctgatgttgatggctttttaagcgagttacaaaaaatgggtttggacaaggctgcatctgcagcagctgaagcagctgagaagataaattcaaacaaatcaaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003864 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006575 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0015939 GO:0015940 GO:0016053 GO:0016740 GO:0016741 GO:0016742 GO:0019752 GO:0032787 GO:0034641 GO:0042364 GO:0042398 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0050897 GO:0051186 GO:0051188 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 ko01110 map00770 map01100 map01110

Pfam Domains

Protein Families

Pantoate_transf

Protein Analysis

357

Amino Acids

37.58

Weight (kDa)

6.49

Isoelectric Point (pI)

34.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46110 AT3G61530 AT3G61530
fragaria_vesca	FvH4_7g15370
malus_domestica	MD07G1131200.v1.1
prunus_persica	Prupe.2G177600_v2.0.a1
pyrus_communis	pycom01g10060 pycom07g12820
rosa_chinensis	RchiOBHm_Chr1g0357691 RchiOBHm_Chr1g0357711
rosa_laevigata	RLG00000028006
rosa_multiflora	Rmu_co7965146.1_g000001 Rmu_co8050058.1_g000001 Rmu_sc0008574.1_g000001 Rmu_ssc0000399.1_g000025 Rmu_ssc0000425.1_g000003
rosa_roxburghii	Rroxscaffold_4G00298580 Rroxscaffold_4G00298590
rosa_rugosa	Rorug01G0257700
rosa_samantha	Rh1AG271800 Rh1BG239000 Rh1CG255700 Rh1CG255800 Rh1DG267400
rosa_wichuraiana	Rw1G024240 Rw1G024250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	769
AasI	GACNNNNNNGTC	2 cut(s)	77, 116
Acc36I	ACCTGC	1 cut(s)	769
AccB1I	GGYRCC	1 cut(s)	493
AccBSI	CCGCTC	1 cut(s)	320
AccI	GTMKAC	2 cut(s)	81, 897
AccII	CGCG	2 cut(s)	251, 328
AcoI	YGGCCR	3 cut(s)	12, 213, 246
AcsI	RAATTY	3 cut(s)	447, 845, 1054
AcuI	CTGAAG	2 cut(s)	716, 1056
AfaI	GTAC	1 cut(s)	399
AfeI	AGCGCT	1 cut(s)	648
AfiI	CCNNNNNNNGG	4 cut(s)	196, 322, 349, 746
AgsI	TTSAA	3 cut(s)	501, 530, 1059
AhdI	GACNNNNNGTC	1 cut(s)	44
AhlI	ACTAGT	2 cut(s)	703, 917
AjnI	CCWGG	1 cut(s)	931
AloI	GAACNNNNNNTCC	2 cut(s)	350, 382
AluBI	AGCT	6 cut(s)	387, 521, 713, 890, 1034, 1043
AluI	AGCT	6 cut(s)	387, 521, 713, 890, 1034, 1043
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	2 cut(s)	31, 635
Alw44I	GTGCAC	1 cut(s)	200
AlwNI	CAGNNNCTG	3 cut(s)	716, 938, 1034
Ama87I	CYCGRG	1 cut(s)	587
Aor51HI	AGCGCT	1 cut(s)	648
AoxI	GGCC	6 cut(s)	12, 88, 213, 246, 333, 599
ApaLI	GTGCAC	1 cut(s)	200
ApoI	RAATTY	3 cut(s)	447, 845, 1054
ArsI	GACNNNNNNTTYG	2 cut(s)	350, 382
AspLEI	GCGC	4 cut(s)	328, 464, 649, 938
AspS9I	GGNCC	2 cut(s)	89, 333
AsuC2I	CCSGG	3 cut(s)	36, 217, 667
AsuHPI	GGTGA	3 cut(s)	112, 157, 166
AsuII	TTCGAA	1 cut(s)	414
AvaI	CYCGRG	1 cut(s)	587
AxyI	CCTNAGG	1 cut(s)	570
BaeGI	GKGCMC	2 cut(s)	204, 496
BanI	GGYRCC	1 cut(s)	493
BanII	GRGCYC	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	204
BccI	CCATC	4 cut(s)	170, 247, 541, 971
BceAI	ACGGC	5 cut(s)	27, 100, 155, 215, 349
BciT130I	CCWGG	1 cut(s)	933
BcnI	CCSGG	3 cut(s)	36, 217, 667
BcoDI	GTCTC	2 cut(s)	31, 635
BcuI	ACTAGT	2 cut(s)	703, 917
BfaI	CTAG	5 cut(s)	384, 621, 704, 785, 918
BfmI	CTRYAG	1 cut(s)	1026
BfoI	RGCGCY	2 cut(s)	650, 939
BfuAI	ACCTGC	1 cut(s)	769
Bme1390I	CCNGG	4 cut(s)	36, 217, 667, 933
BmeRI	GACNNNNNGTC	1 cut(s)	44
BmeT110I	CYCGRG	1 cut(s)	587
BmgT120I	GGNCC	2 cut(s)	89, 333
BmiI	GGNNCC	2 cut(s)	334, 495
BmrFI	CCNGG	4 cut(s)	36, 217, 667, 933
BmsI	GCATC	3 cut(s)	460, 801, 1031
BplI	GAGNNNNNCTC	2 cut(s)	371, 403
BpmI	CTGGAG	1 cut(s)	314
Bpu14I	TTCGAA	1 cut(s)	414
BpuMI	CCSGG	3 cut(s)	36, 217, 667
Bsa29I	ATCGAT	1 cut(s)	432
BsaJI	CCNNGG	4 cut(s)	192, 231, 831, 931
BsaWI	WCCGGW	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	4 cut(s)	196, 322, 349, 746
Bse21I	CCTNAGG	1 cut(s)	570
Bse3DI	GCAATG	2 cut(s)	225, 471
BseBI	CCWGG	1 cut(s)	933
BseCI	ATCGAT	1 cut(s)	432
BseDI	CCNNGG	4 cut(s)	192, 231, 831, 931
BseGI	GGATG	1 cut(s)	475
BseLI	CCNNNNNNNGG	4 cut(s)	196, 322, 349, 746
BseMI	GCAATG	2 cut(s)	225, 471
BseMII	CTCAG	2 cut(s)	584, 1035
BseRI	GAGGAG	1 cut(s)	558
BseSI	GKGCMC	2 cut(s)	204, 496
BseX3I	CGGCCG	3 cut(s)	12, 213, 246
Bsh1236I	CGCG	2 cut(s)	251, 328
Bsh1285I	CGRYCG	3 cut(s)	15, 216, 249
BshFI	GGCC	6 cut(s)	14, 90, 215, 248, 335, 601
BshNI	GGYRCC	1 cut(s)	493
BshVI	ATCGAT	1 cut(s)	432
BsiEI	CGRYCG	3 cut(s)	15, 216, 249
BsiHKAI	GWGCWC	1 cut(s)	204
BsiHKCI	CYCGRG	1 cut(s)	587
BsiSI	CCGG	4 cut(s)	36, 112, 216, 666
BslI	CCNNNNNNNGG	4 cut(s)	196, 322, 349, 746
BsmAI	GTCTC	2 cut(s)	31, 635
BsmBI	CGTCTC	1 cut(s)	31
BsmI	GAATGC	2 cut(s)	5, 695
BsnI	GGCC	6 cut(s)	14, 90, 215, 248, 335, 601
BsoBI	CYCGRG	1 cut(s)	587
Bsp119I	TTCGAA	1 cut(s)	414
Bsp1286I	GDGCHC	3 cut(s)	162, 204, 496
Bsp143I	GATC	1 cut(s)	796
BspANI	GGCC	6 cut(s)	14, 90, 215, 248, 335, 601
BspCNI	CTCAG	2 cut(s)	583, 1036
BspDI	ATCGAT	1 cut(s)	432
BspFNI	CGCG	2 cut(s)	251, 328
BspLI	GGNNCC	2 cut(s)	334, 495
BspMAI	CTGCAG	1 cut(s)	1030
BspMI	ACCTGC	1 cut(s)	769
BspQI	GCTCTTC	1 cut(s)	735
BspT104I	TTCGAA	1 cut(s)	414
BspT107I	GGYRCC	1 cut(s)	493
BsrBI	CCGCTC	1 cut(s)	320
BsrDI	GCAATG	2 cut(s)	225, 471
BssECI	CCNNGG	4 cut(s)	192, 231, 831, 931
BssMI	GATC	1 cut(s)	796
BssT1I	CCWWGG	1 cut(s)	831
Bst2UI	CCWGG	1 cut(s)	933
Bst4CI	ACNGT	2 cut(s)	79, 124
Bst6I	CTCTTC	1 cut(s)	735
BstAPI	GCANNNNNTGC	4 cut(s)	470, 539, 716, 725
BstBI	TTCGAA	1 cut(s)	414
BstC8I	GCNNGC	4 cut(s)	158, 426, 651, 695
BstDEI	CTNAG	2 cut(s)	570, 1044
BstDSI	CCRYGG	1 cut(s)	231
BstEII	GGTNACC	1 cut(s)	835
BstF5I	GGATG	1 cut(s)	475
BstFNI	CGCG	2 cut(s)	251, 328
BstH2I	RGCGCY	2 cut(s)	650, 939
BstHHI	GCGC	4 cut(s)	328, 464, 649, 938
BstKTI	GATC	1 cut(s)	799
BstMAI	GTCTC	2 cut(s)	31, 635
BstMBI	GATC	1 cut(s)	796
BstMCI	CGRYCG	3 cut(s)	15, 216, 249
BstNI	CCWGG	1 cut(s)	933
BstNSI	RCATGY	1 cut(s)	557
BstPI	GGTNACC	1 cut(s)	835
BstSCI	CCNGG	4 cut(s)	34, 215, 665, 931
BstSFI	CTRYAG	1 cut(s)	1026
BstSLI	GKGCMC	2 cut(s)	204, 496
BstUI	CGCG	2 cut(s)	251, 328
BstXI	CCANNNNNNTGG	1 cut(s)	292
BstZI	CGGCCG	3 cut(s)	12, 213, 246
Bsu15I	ATCGAT	1 cut(s)	432
Bsu36I	CCTNAGG	1 cut(s)	570
BsuRI	GGCC	6 cut(s)	14, 90, 215, 248, 335, 601
BsuTUI	ATCGAT	1 cut(s)	432
BtgI	CCRYGG	1 cut(s)	231
BtgZI	GCGATG	2 cut(s)	266, 455
BtsCI	GGATG	1 cut(s)	475
BtsI	GCAGTG	2 cut(s)	310, 778
BtsIMutI	CAGTG	2 cut(s)	310, 778
BveI	ACCTGC	1 cut(s)	769
Cac8I	GCNNGC	4 cut(s)	158, 426, 651, 695
CaiI	CAGNNNCTG	3 cut(s)	716, 938, 1034
CfoI	GCGC	4 cut(s)	328, 464, 649, 938
Cfr13I	GGNCC	2 cut(s)	89, 333
ClaI	ATCGAT	1 cut(s)	432
Csp6I	GTAC	1 cut(s)	398
CviAII	CATG	4 cut(s)	55, 554, 794, 827
CviQI	GTAC	1 cut(s)	398
DdeI	CTNAG	2 cut(s)	570, 1044
DpnI	GATC	1 cut(s)	798
DpnII	GATC	1 cut(s)	796
DraI	TTTAAA	1 cut(s)	453
DrdI	GACNNNNNNGTC	2 cut(s)	77, 116
DriI	GACNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	2 cut(s)	77, 116
EaeI	YGGCCR	3 cut(s)	12, 213, 246
EagI	CGGCCG	3 cut(s)	12, 213, 246
Eam1104I	CTCTTC	1 cut(s)	735
Eam1105I	GACNNNNNGTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	735
EclXI	CGGCCG	3 cut(s)	12, 213, 246
Eco130I	CCWWGG	1 cut(s)	831
Eco24I	GRGCYC	1 cut(s)	162
Eco47III	AGCGCT	1 cut(s)	648
Eco52I	CGGCCG	3 cut(s)	12, 213, 246
Eco57I	CTGAAG	2 cut(s)	716, 1056
Eco81I	CCTNAGG	1 cut(s)	570
Eco88I	CYCGRG	1 cut(s)	587
Eco91I	GGTNACC	1 cut(s)	835
EcoO65I	GGTNACC	1 cut(s)	835
EcoRII	CCWGG	1 cut(s)	931
EcoT14I	CCWWGG	1 cut(s)	831
EcoT38I	GRGCYC	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	831
Esp3I	CGTCTC	1 cut(s)	31
FaeI	CATG	4 cut(s)	58, 557, 797, 830
FaiI	YATR	8 cut(s)	56, 270, 287, 420, 555, 795, 828, 952
FatI	CATG	4 cut(s)	54, 553, 793, 826
FauI	CCCGC	2 cut(s)	39, 351
FblI	GTMKAC	2 cut(s)	81, 897
FokI	GGATG	1 cut(s)	482
FriOI	GRGCYC	1 cut(s)	162
FspBI	CTAG	5 cut(s)	384, 621, 704, 785, 918
GlaI	GCGC	4 cut(s)	327, 463, 648, 937
GsuI	CTGGAG	1 cut(s)	314
HaeII	RGCGCY	2 cut(s)	650, 939
HaeIII	GGCC	6 cut(s)	14, 90, 215, 248, 335, 601
HapII	CCGG	4 cut(s)	36, 112, 216, 666
HhaI	GCGC	4 cut(s)	328, 464, 649, 938
Hin1II	CATG	4 cut(s)	58, 557, 797, 830
Hin6I	GCGC	4 cut(s)	326, 462, 647, 936
HinP1I	GCGC	4 cut(s)	326, 462, 647, 936
HinfI	GANTC	8 cut(s)	39, 117, 209, 242, 372, 380, 434, 736
HpaII	CCGG	4 cut(s)	36, 112, 216, 666
HphI	GGTGA	3 cut(s)	112, 157, 166
Hpy166II	GTNNAC	7 cut(s)	82, 202, 262, 310, 400, 790, 898
Hpy188I	TCNGA	2 cut(s)	371, 735
Hpy188III	TCNNGA	1 cut(s)	501
Hpy8I	GTNNAC	7 cut(s)	82, 202, 262, 310, 400, 790, 898
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	3 cut(s)	452, 507, 603
HpyCH4III	ACNGT	2 cut(s)	79, 124
HpyCH4IV	ACGT	1 cut(s)	63
HpyF3I	CTNAG	2 cut(s)	570, 1044
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	4 cut(s)	58, 557, 797, 830
HspAI	GCGC	4 cut(s)	326, 462, 647, 936
Kzo9I	GATC	1 cut(s)	796
LguI	GCTCTTC	1 cut(s)	735
LmnI	GCTCC	2 cut(s)	392, 755
LweI	GCATC	3 cut(s)	460, 801, 1031
MaeI	CTAG	5 cut(s)	384, 621, 704, 785, 918
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	6 cut(s)	118, 124, 172, 835, 913, 993
MalI	GATC	1 cut(s)	798
MbiI	CCGCTC	1 cut(s)	320
MboI	GATC	1 cut(s)	796
MboII	GAAGA	4 cut(s)	722, 791, 920, 1060
MfeI	CAATTG	2 cut(s)	678, 744
MhlI	GDGCHC	3 cut(s)	162, 204, 496
MluCI	AATT	7 cut(s)	447, 504, 537, 678, 744, 845, 1054
MlyI	GAGTC	5 cut(s)	33, 126, 203, 236, 389
MmeI	TCCRAC	2 cut(s)	462, 850
MnlI	CCTC	3 cut(s)	202, 289, 579
MseI	TTAA	3 cut(s)	452, 960, 986
MslI	CAYNNNNRTG	2 cut(s)	230, 267
MspA1I	CMGCKG	4 cut(s)	51, 713, 1034, 1043
MspI	CCGG	4 cut(s)	36, 112, 216, 666
MspR9I	CCNGG	4 cut(s)	36, 217, 667, 933
MunI	CAATTG	2 cut(s)	678, 744
Mva1269I	GAATGC	2 cut(s)	5, 695
MvaI	CCWGG	1 cut(s)	933
MvnI	CGCG	2 cut(s)	251, 328
NciI	CCSGG	3 cut(s)	36, 217, 667
NdeII	GATC	1 cut(s)	796
NlaIII	CATG	4 cut(s)	58, 557, 797, 830
NlaIV	GGNNCC	2 cut(s)	334, 495
NmeAIII	GCCGAG	4 cut(s)	173, 191, 224, 341
NmuCI	GTSAC	4 cut(s)	118, 124, 172, 913
NspI	RCATGY	1 cut(s)	557
NspV	TTCGAA	1 cut(s)	414
PaqCI	CACCTGC	1 cut(s)	769
PciSI	GCTCTTC	1 cut(s)	735
PcsI	WCGNNNNNNNCGW	1 cut(s)	375
PctI	GAATGC	2 cut(s)	5, 695
PfeI	GAWTC	3 cut(s)	372, 434, 736
PleI	GAGTC	5 cut(s)	33, 125, 203, 236, 388
PpsI	GAGTC	5 cut(s)	33, 125, 203, 236, 388
Psp6I	CCWGG	1 cut(s)	931
PspEI	GGTNACC	1 cut(s)	835
PspGI	CCWGG	1 cut(s)	931
PspN4I	GGNNCC	2 cut(s)	334, 495
PspPI	GGNCC	2 cut(s)	89, 333
PstI	CTGCAG	1 cut(s)	1030
PstNI	CAGNNNCTG	3 cut(s)	716, 938, 1034
PvuII	CAGCTG	3 cut(s)	713, 1034, 1043
RsaI	GTAC	1 cut(s)	399
RsaNI	GTAC	1 cut(s)	398
RseI	CAYNNNNRTG	2 cut(s)	230, 267
SapI	GCTCTTC	1 cut(s)	735
SaqAI	TTAA	3 cut(s)	452, 960, 986
Sau3AI	GATC	1 cut(s)	796
Sau96I	GGNCC	2 cut(s)	89, 333
SchI	GAGTC	5 cut(s)	33, 126, 203, 236, 389
ScrFI	CCNGG	4 cut(s)	36, 217, 667, 933
SduI	GDGCHC	3 cut(s)	162, 204, 496
SfaNI	GCATC	3 cut(s)	460, 801, 1031
SfcI	CTRYAG	1 cut(s)	1026
SfuI	TTCGAA	1 cut(s)	414
SmiMI	CAYNNNNRTG	2 cut(s)	230, 267
SpeI	ACTAGT	2 cut(s)	703, 917
Sse9I	AATT	7 cut(s)	447, 504, 537, 678, 744, 845, 1054
SspMI	CTAG	5 cut(s)	384, 621, 704, 785, 918
StyD4I	CCNGG	4 cut(s)	34, 215, 665, 931
StyI	CCWWGG	1 cut(s)	831
TaaI	ACNGT	2 cut(s)	79, 124
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	2 cut(s)	414, 432
TasI	AATT	7 cut(s)	447, 504, 537, 678, 744, 845, 1054
TauI	GCSGC	5 cut(s)	17, 20, 90, 251, 515
TfiI	GAWTC	3 cut(s)	372, 434, 736
Tru1I	TTAA	3 cut(s)	452, 960, 986
Tru9I	TTAA	3 cut(s)	452, 960, 986
TscAI	CASTG	2 cut(s)	317, 778
TseFI	GTSAC	4 cut(s)	118, 124, 172, 913
Tsp45I	GTSAC	4 cut(s)	118, 124, 172, 913
TspDTI	ATGAA	1 cut(s)	71
TspGWI	ACGGA	1 cut(s)	279
TspRI	CASTG	2 cut(s)	317, 778
VneI	GTGCAC	1 cut(s)	200
XapI	RAATTY	3 cut(s)	447, 845, 1054
XceI	RCATGY	1 cut(s)	557
XcmI	CCANNNNNNNNNTGG	1 cut(s)	800
XmiI	GTMKAC	2 cut(s)	81, 897
XspI	CTAG	5 cut(s)	384, 621, 704, 785, 918

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.