Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008574.1

Orthogroup ID

OG0006569

Physical Location & Seq

Genomic Coordinates Forward (+)

13 .. 396

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008574.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

atgcaggtgctagtttaccatgatcttcttggaatgatgcagcacccacgtcatgcaaaggttaccccaaaattctgtaagcaatatgcacatgttggaaaagtcatcaacaaagctctagtagactacaaggaagaagtcaccaatggtgcgtttccaggcgctttccatagcccatataaaatcaatgctgctgatgttgatggctttgttagtgagttaggaaggatgggtttggacaaggcagcatctgcggcggctgaagtagctgacaagaataatacaagcaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003864 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006575 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0015939 GO:0015940 GO:0016053 GO:0016740 GO:0016741 GO:0016742 GO:0019752 GO:0032787 GO:0034641 GO:0042364 GO:0042398 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0050897 GO:0051186 GO:0051188 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 ko01110 map00770 map01100 map01110

Pfam Domains

Protein Families

Pantoate_transf

Protein Analysis

97

Amino Acids

10.59

Weight (kDa)

8.71

Isoelectric Point (pI)

7.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46110 AT3G61530 AT3G61530
fragaria_vesca	FvH4_7g15370
malus_domestica	MD07G1131200.v1.1
prunus_persica	Prupe.2G177600_v2.0.a1
pyrus_communis	pycom01g10060 pycom07g12820
rosa_chinensis	RchiOBHm_Chr1g0357691 RchiOBHm_Chr1g0357711
rosa_laevigata	RLG00000028006
rosa_multiflora	Rmu_co7965146.1_g000001 Rmu_co8050058.1_g000001 Rmu_sc0008574.1_g000001 Rmu_ssc0000399.1_g000025 Rmu_ssc0000425.1_g000003
rosa_roxburghii	Rroxscaffold_4G00298580 Rroxscaffold_4G00298590
rosa_rugosa	Rorug01G0257700
rosa_samantha	Rh1AG271800 Rh1BG239000 Rh1CG255700 Rh1CG255800 Rh1DG267400
rosa_wichuraiana	Rw1G024240 Rw1G024250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	123
AciI	CCGC	2 cut(s)	254, 257
AcsI	RAATTY	1 cut(s)	71
AcuI	CTGAAG	1 cut(s)	282
AflIII	ACRYGT	1 cut(s)	91
AjiI	CACGTC	1 cut(s)	50
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	2 cut(s)	116, 269
AluI	AGCT	2 cut(s)	116, 269
AlwNI	CAGNNNCTG	1 cut(s)	251
ApeKI	GCWGC	3 cut(s)	40, 191, 245
ApoI	RAATTY	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	164
AsuHPI	GGTGA	1 cut(s)	133
BbvI	GCAGC	3 cut(s)	52, 178, 257
BccI	CCATC	2 cut(s)	197, 223
BciT130I	CCWGG	1 cut(s)	159
BfaI	CTAG	2 cut(s)	11, 119
BfoI	RGCGCY	1 cut(s)	165
BisI	GCNGC	5 cut(s)	41, 192, 246, 255, 258
BlsI	GCNGC	5 cut(s)	42, 193, 247, 256, 259
Bme1390I	CCNGG	1 cut(s)	159
BmgBI	CACGTC	1 cut(s)	50
BmrFI	CCNGG	1 cut(s)	159
BmsI	GCATC	2 cut(s)	27, 257
BseBI	CCWGG	1 cut(s)	159
BseGI	GGATG	1 cut(s)	234
BseXI	GCAGC	3 cut(s)	52, 178, 257
Bsp143I	GATC	1 cut(s)	22
BspACI	CCGC	2 cut(s)	254, 257
BssMI	GATC	1 cut(s)	22
Bst2UI	CCWGG	1 cut(s)	159
BstAPI	GCANNNNNTGC	1 cut(s)	251
BstEII	GGTNACC	1 cut(s)	61
BstF5I	GGATG	1 cut(s)	234
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	22
BstMWI	GCNNNNNNNGC	3 cut(s)	251, 254, 266
BstNI	CCWGG	1 cut(s)	159
BstNSI	RCATGY	1 cut(s)	95
BstPI	GGTNACC	1 cut(s)	61
BstSCI	CCNGG	1 cut(s)	157
BstV1I	GCAGC	3 cut(s)	52, 178, 257
BtrI	CACGTC	1 cut(s)	50
BtsCI	GGATG	1 cut(s)	234
CaiI	CAGNNNCTG	1 cut(s)	251
CfoI	GCGC	1 cut(s)	164
CviAII	CATG	3 cut(s)	20, 53, 92
CviJI	RGCY	5 cut(s)	116, 174, 207, 260, 269
CviKI_1	RGCY	5 cut(s)	116, 174, 207, 260, 269
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
Eco57I	CTGAAG	1 cut(s)	282
Eco91I	GGTNACC	1 cut(s)	61
EcoO65I	GGTNACC	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	157
FaeI	CATG	3 cut(s)	23, 56, 95
FaiI	YATR	7 cut(s)	21, 54, 87, 93, 171, 178, 180
FatI	CATG	3 cut(s)	19, 52, 91
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	5 cut(s)	41, 192, 246, 255, 258
FokI	GGATG	1 cut(s)	241
Fsp4HI	GCNGC	5 cut(s)	41, 192, 246, 255, 258
FspBI	CTAG	2 cut(s)	11, 119
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	5 cut(s)	41, 192, 246, 255, 258
HaeII	RGCGCY	1 cut(s)	165
HhaI	GCGC	1 cut(s)	164
Hin1II	CATG	3 cut(s)	23, 56, 95
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	2 cut(s)	16, 124
Hpy8I	GTNNAC	2 cut(s)	16, 124
HpyAV	CCTTC	1 cut(s)	219
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	4 cut(s)	4, 40, 56, 89
HpyF10VI	GCNNNNNNNGC	3 cut(s)	251, 254, 266
HpySE526I	ACGT	1 cut(s)	49
Hsp92II	CATG	3 cut(s)	23, 56, 95
HspAI	GCGC	1 cut(s)	162
Kzo9I	GATC	1 cut(s)	22
LpnPI	CCDG	2 cut(s)	144, 171
Lsp1109I	GCAGC	3 cut(s)	52, 178, 257
LweI	GCATC	2 cut(s)	27, 257
MaeI	CTAG	2 cut(s)	11, 119
MaeII	ACGT	1 cut(s)	49
MaeIII	GTNAC	2 cut(s)	61, 139
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	2 cut(s)	17, 146
MluCI	AATT	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	76
MspR9I	CCNGG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	3 cut(s)	251, 254, 266
NdeII	GATC	1 cut(s)	22
NlaIII	CATG	3 cut(s)	23, 56, 95
NmuCI	GTSAC	1 cut(s)	139
NspI	RCATGY	1 cut(s)	95
PciI	ACATGT	1 cut(s)	91
PkrI	GCNGC	5 cut(s)	42, 193, 247, 256, 259
PscI	ACATGT	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	157
PspEI	GGTNACC	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	157
PstNI	CAGNNNCTG	1 cut(s)	251
SatI	GCNGC	5 cut(s)	41, 192, 246, 255, 258
Sau3AI	GATC	1 cut(s)	22
ScrFI	CCNGG	1 cut(s)	159
SetI	ASST	5 cut(s)	9, 52, 63, 118, 271
SfaNI	GCATC	2 cut(s)	27, 257
Sse9I	AATT	1 cut(s)	71
SsiI	CCGC	2 cut(s)	254, 257
SspMI	CTAG	2 cut(s)	11, 119
StyD4I	CCNGG	1 cut(s)	157
TaiI	ACGT	1 cut(s)	52
TasI	AATT	1 cut(s)	71
TauI	GCSGC	2 cut(s)	257, 260
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	3 cut(s)	40, 191, 245
Tsp45I	GTSAC	1 cut(s)	139
XapI	RAATTY	1 cut(s)	71
XceI	RCATGY	1 cut(s)	95
XcmI	CCANNNNNNNNNTGG	1 cut(s)	26
XmiI	GTMKAC	1 cut(s)	123
XspI	CTAG	2 cut(s)	11, 119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.