Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0006569

Physical Location & Seq

Genomic Coordinates Reverse (-)

13374301 .. 13377185

Gene Structure 2885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g15370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGCTTTCGCCGCCGCCGTTTCACGCGCTGCCTTCCTTTCCAGGAGGGCCGGAACCATGATCCGCTCCATGAGCAACGTCCCCGAGAACACCGTCTACGGTGGCCCCAAGTCACAGAGCTCCGACCAGAGAGTCACCGTGACCCAAATCAAGCAGAAGCACAAGAAAGGCGAGCCCATCACCATGGTCACCGCCTATGACTACCCCTCGGCGGTTCACCTCGACTTGGCCGGAATCGACATTGCTCTGGTCGGCGACTCGGCGGCGATGGTTGTTCATGGATATGATACCACTCTCCCTATAACGCTTGACGAGATGCTCGTCCACTGCCGCGCGGTGGCGCGTGGGGCCAAGCGCCCGCTTTTGGTTGGGGACTTGCCTTTTGGGTTCTACGAGTCCAGCTCCATTCAGGCTATCGATTCAGCGGTTAGGCTTTTGAAGGAAGGAGCAATGGATGCGATAAAGTTGGAAGGAGGGGCACCTTCGAGGATTACTGCGGCAAAGTCTATTGTTGAGGCTGGAATTGCTGTGATGGGGCATGTGGGACTTACTCCGCAGGCCATTAGCGTTCTCGGGGGGTTTAGGCCTCAAGGAAGGAATGTTGCTAGTGCTGTAAAGGTTGTGGAGACAGCATTGGCTTTGCAAGAAGCTGGGTGCTTTTCTGTTGTTTTAGAATGTGTACCACCACTTGTGGCAGCTGCAGCAACATCTGCTCTTCAGATTCCTACTATTGGCATTGGAGCAGGGCCCTTTTGCAGTGGACAGGTGCTAGTTTACCATGATCTTCTTGGAATGATGCAGCACCCACATCATGCCAAGGTTACCCCTAAATTTTGTAAGCAGTTTGCACAGGTTGGAGATGTCATCAACAAAGCTCTAGTGGACTACAAGGAAGAAGTGACTAGTGGGACGTTCCCAGGCGCTGCCCACAGCCCATACAAAATCAACCCTGCTGATGTTGATGGCTTTTTAAGCGAGTTACAAAAATTGGGTTTGGACAAGGCTGCATCTGCGGCAGCTGAAGCAGCTGAGAAGATAAATCCAAACAAATCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003864 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006575 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0015939 GO:0015940 GO:0016053 GO:0016740 GO:0016741 GO:0016742 GO:0019752 GO:0032787 GO:0034641 GO:0042364 GO:0042398 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0050897 GO:0051186 GO:0051188 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 ko01110 map00770 map01100 map01110

Pfam Domains

Protein Families

Pantoate_transf

Protein Analysis

353

Amino Acids

36.87

Weight (kDa)

8.19

Isoelectric Point (pI)

34.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pantoate_transf	PF02548	44 - 307	1.1e-104	Ketopantoate hydroxymethyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46110 AT3G61530 AT3G61530
fragaria_vesca	FvH4_7g15370
malus_domestica	MD07G1131200.v1.1
prunus_persica	Prupe.2G177600_v2.0.a1
pyrus_communis	pycom01g10060 pycom07g12820
rosa_chinensis	RchiOBHm_Chr1g0357691 RchiOBHm_Chr1g0357711
rosa_laevigata	RLG00000028006
rosa_multiflora	Rmu_co7965146.1_g000001 Rmu_co8050058.1_g000001 Rmu_sc0008574.1_g000001 Rmu_ssc0000399.1_g000025 Rmu_ssc0000425.1_g000003
rosa_roxburghii	Rroxscaffold_4G00298580 Rroxscaffold_4G00298590
rosa_rugosa	Rorug01G0257700
rosa_samantha	Rh1AG271800 Rh1BG239000 Rh1CG255700 Rh1CG255800 Rh1DG267400
rosa_wichuraiana	Rw1G024240 Rw1G024250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	131
AccB1I	GGYRCC	1 cut(s)	478
AccBSI	CCGCTC	1 cut(s)	66
AccI	GTMKAC	1 cut(s)	96
AccII	CGCG	4 cut(s)	27, 333, 335, 343
AclWI	GGATC	1 cut(s)	55
AcoI	YGGCCR	1 cut(s)	228
AcsI	RAATTY	1 cut(s)	830
AcuI	CTGAAG	2 cut(s)	701, 1041
AfaI	GTAC	1 cut(s)	681
AfiI	CCNNNNNNNGG	5 cut(s)	211, 226, 337, 364, 731
AgsI	TTSAA	1 cut(s)	439
AhlI	ACTAGT	1 cut(s)	902
AjnI	CCWGG	2 cut(s)	41, 916
AluBI	AGCT	7 cut(s)	120, 402, 650, 698, 875, 1019, 1028
AluI	AGCT	7 cut(s)	120, 402, 650, 698, 875, 1019, 1028
Alw21I	GWGCWC	1 cut(s)	122
Alw26I	GTCTC	1 cut(s)	620
AlwI	GGATC	1 cut(s)	55
AlwNI	CAGNNNCTG	1 cut(s)	923
Ama87I	CYCGRG	2 cut(s)	83, 572
AoxI	GGCC	7 cut(s)	48, 103, 228, 348, 558, 584, 746
ApaI	GGGCCC	1 cut(s)	750
ApeKI	GCWGC	9 cut(s)	29, 695, 698, 701, 799, 923, 1004, 1016, 1025
ApoI	RAATTY	1 cut(s)	830
ArsI	GACNNNNNNTTYG	2 cut(s)	365, 397
AspLEI	GCGC	5 cut(s)	29, 335, 343, 357, 923
AspS9I	GGNCC	5 cut(s)	48, 104, 348, 746, 747
AsuHPI	GGTGA	4 cut(s)	127, 172, 181, 209
AvaI	CYCGRG	2 cut(s)	83, 572
BaeGI	GKGCMC	2 cut(s)	481, 750
BanI	GGYRCC	1 cut(s)	478
BanII	GRGCYC	3 cut(s)	122, 177, 750
Bbv12I	GWGCWC	1 cut(s)	122
BbvI	GCAGC	9 cut(s)	16, 685, 707, 713, 811, 910, 991, 1028, 1037
BccI	CCATC	4 cut(s)	185, 262, 526, 956
BceAI	ACGGC	1 cut(s)	2
BciT130I	CCWGG	2 cut(s)	43, 918
BcoDI	GTCTC	1 cut(s)	620
BcuI	ACTAGT	1 cut(s)	902
BfaI	CTAG	4 cut(s)	606, 770, 878, 903
BfmI	CTRYAG	1 cut(s)	699
BfoI	RGCGCY	2 cut(s)	358, 924
Bme1390I	CCNGG	2 cut(s)	43, 918
BmeT110I	CYCGRG	2 cut(s)	83, 572
BmgT120I	GGNCC	5 cut(s)	48, 104, 348, 746, 747
BmiI	GGNNCC	5 cut(s)	55, 106, 349, 480, 748
BmrFI	CCNGG	2 cut(s)	43, 918
BmsI	GCATC	4 cut(s)	306, 445, 786, 1016
BplI	GAGNNNNNCTC	2 cut(s)	386, 418
BpuEI	CTTGAG	1 cut(s)	573
Bsa29I	ATCGAT	1 cut(s)	417
BsaJI	CCNNGG	4 cut(s)	183, 207, 816, 916
Bsc4I	CCNNNNNNNGG	5 cut(s)	211, 226, 337, 364, 731
Bse3DI	GCAATG	2 cut(s)	240, 456
BseBI	CCWGG	2 cut(s)	43, 918
BseCI	ATCGAT	1 cut(s)	417
BseDI	CCNNGG	4 cut(s)	183, 207, 816, 916
BseGI	GGATG	1 cut(s)	460
BseLI	CCNNNNNNNGG	5 cut(s)	211, 226, 337, 364, 731
BseMI	GCAATG	2 cut(s)	240, 456
BseMII	CTCAG	1 cut(s)	1020
BseSI	GKGCMC	2 cut(s)	481, 750
BseXI	GCAGC	9 cut(s)	16, 685, 707, 713, 811, 910, 991, 1028, 1037
BseYI	CCCAGC	1 cut(s)	650
Bsh1236I	CGCG	4 cut(s)	27, 333, 335, 343
BshFI	GGCC	7 cut(s)	50, 105, 230, 350, 560, 586, 748
BshNI	GGYRCC	1 cut(s)	478
BshVI	ATCGAT	1 cut(s)	417
BsiHKAI	GWGCWC	1 cut(s)	122
BsiHKCI	CYCGRG	2 cut(s)	83, 572
BsiSI	CCGG	2 cut(s)	51, 231
BslFI	GGGAC	4 cut(s)	65, 386, 558, 922
BslI	CCNNNNNNNGG	5 cut(s)	211, 226, 337, 364, 731
BsmAI	GTCTC	1 cut(s)	620
BsmFI	GGGAC	4 cut(s)	65, 386, 558, 922
BsnI	GGCC	7 cut(s)	50, 105, 230, 350, 560, 586, 748
BsoBI	CYCGRG	2 cut(s)	83, 572
Bsp120I	GGGCCC	1 cut(s)	746
Bsp1286I	GDGCHC	4 cut(s)	122, 177, 481, 750
Bsp143I	GATC	2 cut(s)	60, 781
Bsp19I	CCATGG	1 cut(s)	183
BspANI	GGCC	7 cut(s)	50, 105, 230, 350, 560, 586, 748
BspCNI	CTCAG	1 cut(s)	1021
BspDI	ATCGAT	1 cut(s)	417
BspFNI	CGCG	4 cut(s)	27, 333, 335, 343
BspLI	GGNNCC	5 cut(s)	55, 106, 349, 480, 748
BspMAI	CTGCAG	1 cut(s)	703
BspPI	GGATC	1 cut(s)	55
BspQI	GCTCTTC	1 cut(s)	720
BspT107I	GGYRCC	1 cut(s)	478
BsrBI	CCGCTC	1 cut(s)	66
BsrDI	GCAATG	2 cut(s)	240, 456
BssECI	CCNNGG	4 cut(s)	183, 207, 816, 916
BssMI	GATC	2 cut(s)	60, 781
BssT1I	CCWWGG	2 cut(s)	183, 816
Bst2UI	CCWGG	2 cut(s)	43, 918
Bst4CI	ACNGT	3 cut(s)	94, 101, 139
Bst6I	CTCTTC	1 cut(s)	720
BstAPI	GCANNNNNTGC	2 cut(s)	455, 710
BstC8I	GCNNGC	3 cut(s)	173, 359, 558
BstDEI	CTNAG	1 cut(s)	1029
BstDSI	CCRYGG	1 cut(s)	183
BstEII	GGTNACC	2 cut(s)	187, 820
BstF5I	GGATG	1 cut(s)	460
BstFNI	CGCG	4 cut(s)	27, 333, 335, 343
BstH2I	RGCGCY	2 cut(s)	358, 924
BstHHI	GCGC	5 cut(s)	29, 335, 343, 357, 923
BstKTI	GATC	2 cut(s)	63, 784
BstMAI	GTCTC	1 cut(s)	620
BstMBI	GATC	2 cut(s)	60, 781
BstNI	CCWGG	2 cut(s)	43, 918
BstNSI	RCATGY	1 cut(s)	542
BstPI	GGTNACC	2 cut(s)	187, 820
BstSCI	CCNGG	2 cut(s)	41, 916
BstSFI	CTRYAG	1 cut(s)	699
BstSLI	GKGCMC	2 cut(s)	481, 750
BstUI	CGCG	4 cut(s)	27, 333, 335, 343
BstV1I	GCAGC	9 cut(s)	16, 685, 707, 713, 811, 910, 991, 1028, 1037
BstXI	CCANNNNNNTGG	1 cut(s)	184
Bsu15I	ATCGAT	1 cut(s)	417
BsuRI	GGCC	7 cut(s)	50, 105, 230, 350, 560, 586, 748
BsuTUI	ATCGAT	1 cut(s)	417
BtgI	CCRYGG	1 cut(s)	183
BtgZI	GCGATG	1 cut(s)	281
BtsCI	GGATG	1 cut(s)	460
BtsI	GCAGTG	2 cut(s)	325, 763
BtsIMutI	CAGTG	2 cut(s)	325, 763
Cac8I	GCNNGC	3 cut(s)	173, 359, 558
CaiI	CAGNNNCTG	1 cut(s)	923
CfoI	GCGC	5 cut(s)	29, 335, 343, 357, 923
Cfr13I	GGNCC	5 cut(s)	48, 104, 348, 746, 747
ClaI	ATCGAT	1 cut(s)	417
Csp6I	GTAC	1 cut(s)	680
CviAII	CATG	7 cut(s)	58, 70, 184, 278, 539, 779, 812
CviQI	GTAC	1 cut(s)	680
DdeI	CTNAG	1 cut(s)	1029
DpnI	GATC	2 cut(s)	62, 783
DpnII	GATC	2 cut(s)	60, 781
DrdI	GACNNNNNNGTC	1 cut(s)	131
DseDI	GACNNNNNNGTC	1 cut(s)	131
EaeI	YGGCCR	1 cut(s)	228
Eam1104I	CTCTTC	1 cut(s)	720
EarI	CTCTTC	1 cut(s)	720
Ecl136II	GAGCTC	1 cut(s)	120
Eco130I	CCWWGG	2 cut(s)	183, 816
Eco147I	AGGCCT	1 cut(s)	586
Eco24I	GRGCYC	3 cut(s)	122, 177, 750
Eco53kI	GAGCTC	1 cut(s)	120
Eco57I	CTGAAG	2 cut(s)	701, 1041
Eco88I	CYCGRG	2 cut(s)	83, 572
Eco91I	GGTNACC	2 cut(s)	187, 820
EcoICRI	GAGCTC	1 cut(s)	120
EcoO109I	RGGNCCY	2 cut(s)	746, 747
EcoO65I	GGTNACC	2 cut(s)	187, 820
EcoRII	CCWGG	2 cut(s)	41, 916
EcoT14I	CCWWGG	2 cut(s)	183, 816
EcoT38I	GRGCYC	3 cut(s)	122, 177, 750
ErhI	CCWWGG	2 cut(s)	183, 816
FaeI	CATG	7 cut(s)	61, 73, 187, 281, 542, 782, 815
FaqI	GGGAC	4 cut(s)	65, 386, 558, 922
FatI	CATG	7 cut(s)	57, 69, 183, 277, 538, 778, 811
FauI	CCCGC	1 cut(s)	366
FblI	GTMKAC	1 cut(s)	96
FokI	GGATG	1 cut(s)	467
FriOI	GRGCYC	3 cut(s)	122, 177, 750
FspBI	CTAG	4 cut(s)	606, 770, 878, 903
GlaI	GCGC	5 cut(s)	28, 334, 342, 356, 922
GsaI	CCCAGC	1 cut(s)	654
HaeII	RGCGCY	2 cut(s)	358, 924
HaeIII	GGCC	7 cut(s)	50, 105, 230, 350, 560, 586, 748
HapII	CCGG	2 cut(s)	51, 231
HhaI	GCGC	5 cut(s)	29, 335, 343, 357, 923
Hin1II	CATG	7 cut(s)	61, 73, 187, 281, 542, 782, 815
Hin6I	GCGC	5 cut(s)	27, 333, 341, 355, 921
HinP1I	GCGC	5 cut(s)	27, 333, 341, 355, 921
HinfI	GANTC	6 cut(s)	132, 234, 257, 395, 419, 721
HpaII	CCGG	2 cut(s)	51, 231
HphI	GGTGA	4 cut(s)	127, 172, 181, 209
Hpy166II	GTNNAC	7 cut(s)	97, 217, 325, 680, 761, 775, 883
Hpy188I	TCNGA	2 cut(s)	124, 720
Hpy8I	GTNNAC	7 cut(s)	97, 217, 325, 680, 761, 775, 883
HpyAV	CCTTC	6 cut(s)	43, 433, 437, 464, 492, 588
HpyCH4III	ACNGT	3 cut(s)	94, 101, 139
HpyCH4IV	ACGT	2 cut(s)	78, 911
HpyCH4V	TGCA	6 cut(s)	643, 701, 756, 799, 848, 1007
HpyF3I	CTNAG	1 cut(s)	1029
HpySE526I	ACGT	2 cut(s)	78, 911
Hsp92II	CATG	7 cut(s)	61, 73, 187, 281, 542, 782, 815
HspAI	GCGC	5 cut(s)	27, 333, 341, 355, 921
Kzo9I	GATC	2 cut(s)	60, 781
LguI	GCTCTTC	1 cut(s)	720
LmnI	GCTCC	5 cut(s)	71, 125, 407, 446, 740
Lsp1109I	GCAGC	9 cut(s)	16, 685, 707, 713, 811, 910, 991, 1028, 1037
LweI	GCATC	4 cut(s)	306, 445, 786, 1016
MaeI	CTAG	4 cut(s)	606, 770, 878, 903
MaeII	ACGT	2 cut(s)	78, 911
MaeIII	GTNAC	7 cut(s)	111, 133, 139, 187, 820, 898, 978
MalI	GATC	2 cut(s)	62, 783
MbiI	CCGCTC	1 cut(s)	66
MboI	GATC	2 cut(s)	60, 781
MboII	GAAGA	4 cut(s)	707, 776, 905, 1045
MhlI	GDGCHC	4 cut(s)	122, 177, 481, 750
MluCI	AATT	3 cut(s)	522, 830, 986
MlyI	GAGTC	3 cut(s)	141, 251, 404
MmeI	TCCRAC	3 cut(s)	147, 447, 835
MnlI	CCTC	7 cut(s)	39, 217, 230, 467, 480, 508, 597
MseI	TTAA	1 cut(s)	971
MslI	CAYNNNNRTG	2 cut(s)	182, 282
MspA1I	CMGCKG	4 cut(s)	425, 698, 1019, 1028
MspI	CCGG	2 cut(s)	51, 231
MspR9I	CCNGG	2 cut(s)	43, 918
MvaI	CCWGG	2 cut(s)	43, 918
MvnI	CGCG	4 cut(s)	27, 333, 335, 343
NcoI	CCATGG	1 cut(s)	183
NdeII	GATC	2 cut(s)	60, 781
NlaIII	CATG	7 cut(s)	61, 73, 187, 281, 542, 782, 815
NlaIV	GGNNCC	5 cut(s)	55, 106, 349, 480, 748
NmeAIII	GCCGAG	2 cut(s)	188, 239
NmuCI	GTSAC	5 cut(s)	111, 133, 139, 187, 898
NspI	RCATGY	1 cut(s)	542
PceI	AGGCCT	1 cut(s)	586
PciSI	GCTCTTC	1 cut(s)	720
PcsI	WCGNNNNNNNCGW	2 cut(s)	15, 318
PfeI	GAWTC	3 cut(s)	234, 419, 721
PfoI	TCCNGGA	1 cut(s)	41
PleI	GAGTC	3 cut(s)	140, 251, 403
PpsI	GAGTC	3 cut(s)	140, 251, 403
Psp124BI	GAGCTC	1 cut(s)	122
Psp6I	CCWGG	2 cut(s)	41, 916
PspEI	GGTNACC	2 cut(s)	187, 820
PspFI	CCCAGC	1 cut(s)	650
PspGI	CCWGG	2 cut(s)	41, 916
PspN4I	GGNNCC	5 cut(s)	55, 106, 349, 480, 748
PspOMI	GGGCCC	1 cut(s)	746
PspPI	GGNCC	5 cut(s)	48, 104, 348, 746, 747
PsrI	GAACNNNNNNTAC	2 cut(s)	80, 112
PstI	CTGCAG	1 cut(s)	703
PstNI	CAGNNNCTG	1 cut(s)	923
PvuII	CAGCTG	3 cut(s)	698, 1019, 1028
RsaI	GTAC	1 cut(s)	681
RsaNI	GTAC	1 cut(s)	680
RseI	CAYNNNNRTG	2 cut(s)	182, 282
SacI	GAGCTC	1 cut(s)	122
SapI	GCTCTTC	1 cut(s)	720
SaqAI	TTAA	1 cut(s)	971
Sau3AI	GATC	2 cut(s)	60, 781
Sau96I	GGNCC	5 cut(s)	48, 104, 348, 746, 747
SchI	GAGTC	3 cut(s)	141, 251, 404
ScrFI	CCNGG	2 cut(s)	43, 918
SduI	GDGCHC	4 cut(s)	122, 177, 481, 750
SfaNI	GCATC	4 cut(s)	306, 445, 786, 1016
SfcI	CTRYAG	1 cut(s)	699
SmiMI	CAYNNNNRTG	2 cut(s)	182, 282
SmlI	CTYRAG	1 cut(s)	588
SmoI	CTYRAG	1 cut(s)	588
SpeI	ACTAGT	1 cut(s)	902
Sse9I	AATT	3 cut(s)	522, 830, 986
SseBI	AGGCCT	1 cut(s)	586
SspMI	CTAG	4 cut(s)	606, 770, 878, 903
SstI	GAGCTC	1 cut(s)	122
StuI	AGGCCT	1 cut(s)	586
StyD4I	CCNGG	2 cut(s)	41, 916
StyI	CCWWGG	2 cut(s)	183, 816
TaaI	ACNGT	3 cut(s)	94, 101, 139
TaiI	ACGT	2 cut(s)	81, 914
TaqI	TCGA	4 cut(s)	222, 237, 417, 485
TasI	AATT	3 cut(s)	522, 830, 986
TauI	GCSGC	6 cut(s)	14, 17, 266, 333, 500, 1016
TfiI	GAWTC	3 cut(s)	234, 419, 721
Tru1I	TTAA	1 cut(s)	971
Tru9I	TTAA	1 cut(s)	971
TscAI	CASTG	2 cut(s)	332, 763
TseFI	GTSAC	5 cut(s)	111, 133, 139, 187, 898
TseI	GCWGC	9 cut(s)	29, 695, 698, 701, 799, 923, 1004, 1016, 1025
Tsp45I	GTSAC	5 cut(s)	111, 133, 139, 187, 898
TspDTI	ATGAA	1 cut(s)	266
TspRI	CASTG	2 cut(s)	332, 763
XapI	RAATTY	1 cut(s)	830
XceI	RCATGY	1 cut(s)	542
XcmI	CCANNNNNNNNNTGG	1 cut(s)	785
XmiI	GTMKAC	1 cut(s)	96
XspI	CTAG	4 cut(s)	606, 770, 878, 903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.