Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7965146.1

Orthogroup ID

OG0006569

Physical Location & Seq

Genomic Coordinates Reverse (-)

24 .. 437

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7965146.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atggcattcacggccgccgctttcgtctccccgcccggacttgtcgtccgctgcatgaacaacgtgcctgacagcacagtctacggcggcccaaagtcgcaaagcccagaccggagagtcaccgtcactcaaataaagcagaagcacagcaagggcgagcccatcaccgccgtcaccgcctacgactacccctcggcggtgcacttggactcggccgggatagacatagccgtggtcggcgactcggccgcgatggttgttcacggatatgataccactctccccataacgctggaggaaatgctcgtccactgccgagcggtggcgcgtggggccaagcacccgcttttggttgcggacttgccgttcggattctacgagtctagctccattcaggtacaccagcattggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003864 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006575 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0015939 GO:0015940 GO:0016053 GO:0016740 GO:0016741 GO:0016742 GO:0019752 GO:0032787 GO:0034641 GO:0042364 GO:0042398 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0050897 GO:0051186 GO:0051188 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 ko01110 map00770 map01100 map01110

Pfam Domains

Protein Families

Pantoate_transf

Protein Analysis

137

Amino Acids

14.72

Weight (kDa)

6.35

Isoelectric Point (pI)

44.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46110 AT3G61530 AT3G61530
fragaria_vesca	FvH4_7g15370
malus_domestica	MD07G1131200.v1.1
prunus_persica	Prupe.2G177600_v2.0.a1
pyrus_communis	pycom01g10060 pycom07g12820
rosa_chinensis	RchiOBHm_Chr1g0357691 RchiOBHm_Chr1g0357711
rosa_laevigata	RLG00000028006
rosa_multiflora	Rmu_co7965146.1_g000001 Rmu_co8050058.1_g000001 Rmu_sc0008574.1_g000001 Rmu_ssc0000399.1_g000025 Rmu_ssc0000425.1_g000003
rosa_roxburghii	Rroxscaffold_4G00298580 Rroxscaffold_4G00298590
rosa_rugosa	Rorug01G0257700
rosa_samantha	Rh1AG271800 Rh1BG239000 Rh1CG255700 Rh1CG255800 Rh1DG267400
rosa_wichuraiana	Rw1G024240 Rw1G024250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	77, 116
AccBSI	CCGCTC	1 cut(s)	320
AccI	GTMKAC	1 cut(s)	81
AccII	CGCG	2 cut(s)	251, 328
AcoI	YGGCCR	3 cut(s)	12, 213, 246
AfaI	GTAC	1 cut(s)	399
AfiI	CCNNNNNNNGG	3 cut(s)	196, 322, 349
AhdI	GACNNNNNGTC	1 cut(s)	44
AloI	GAACNNNNNNTCC	2 cut(s)	350, 382
AluBI	AGCT	1 cut(s)	387
AluI	AGCT	1 cut(s)	387
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	1 cut(s)	31
Alw44I	GTGCAC	1 cut(s)	200
AoxI	GGCC	5 cut(s)	12, 88, 213, 246, 333
ApaLI	GTGCAC	1 cut(s)	200
ApeKI	GCWGC	1 cut(s)	51
ArsI	GACNNNNNNTTYG	2 cut(s)	350, 382
AspLEI	GCGC	1 cut(s)	328
AspS9I	GGNCC	2 cut(s)	89, 333
AsuC2I	CCSGG	2 cut(s)	36, 217
AsuHPI	GGTGA	3 cut(s)	112, 157, 166
BaeGI	GKGCMC	1 cut(s)	204
BanII	GRGCYC	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	2 cut(s)	170, 247
BceAI	ACGGC	5 cut(s)	27, 100, 155, 215, 349
BcnI	CCSGG	2 cut(s)	36, 217
BcoDI	GTCTC	1 cut(s)	31
BfaI	CTAG	1 cut(s)	384
BisI	GCNGC	5 cut(s)	15, 18, 52, 88, 249
BlsI	GCNGC	5 cut(s)	16, 19, 53, 89, 250
Bme1390I	CCNGG	2 cut(s)	36, 217
BmeRI	GACNNNNNGTC	1 cut(s)	44
BmgT120I	GGNCC	2 cut(s)	89, 333
BmiI	GGNNCC	1 cut(s)	334
BmrFI	CCNGG	2 cut(s)	36, 217
BplI	GAGNNNNNCTC	2 cut(s)	371, 403
BpmI	CTGGAG	1 cut(s)	314
BpuMI	CCSGG	2 cut(s)	36, 217
BsaJI	CCNNGG	2 cut(s)	192, 231
BsaWI	WCCGGW	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	3 cut(s)	196, 322, 349
BseDI	CCNNGG	2 cut(s)	192, 231
BseLI	CCNNNNNNNGG	3 cut(s)	196, 322, 349
BseSI	GKGCMC	1 cut(s)	204
BseX3I	CGGCCG	3 cut(s)	12, 213, 246
BseXI	GCAGC	1 cut(s)	38
Bsh1236I	CGCG	2 cut(s)	251, 328
Bsh1285I	CGRYCG	3 cut(s)	15, 216, 249
BshFI	GGCC	5 cut(s)	14, 90, 215, 248, 335
BsiEI	CGRYCG	3 cut(s)	15, 216, 249
BsiHKAI	GWGCWC	1 cut(s)	204
BsiSI	CCGG	3 cut(s)	36, 112, 216
BslI	CCNNNNNNNGG	3 cut(s)	196, 322, 349
BsmAI	GTCTC	1 cut(s)	31
BsmBI	CGTCTC	1 cut(s)	31
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	5 cut(s)	14, 90, 215, 248, 335
Bsp1286I	GDGCHC	2 cut(s)	162, 204
BspANI	GGCC	5 cut(s)	14, 90, 215, 248, 335
BspFNI	CGCG	2 cut(s)	251, 328
BspLI	GGNNCC	1 cut(s)	334
BsrBI	CCGCTC	1 cut(s)	320
BssECI	CCNNGG	2 cut(s)	192, 231
Bst4CI	ACNGT	2 cut(s)	79, 124
BstC8I	GCNNGC	1 cut(s)	158
BstDSI	CCRYGG	1 cut(s)	231
BstFNI	CGCG	2 cut(s)	251, 328
BstHHI	GCGC	1 cut(s)	328
BstMAI	GTCTC	1 cut(s)	31
BstMCI	CGRYCG	3 cut(s)	15, 216, 249
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 176, 332
BstSCI	CCNGG	2 cut(s)	34, 215
BstSLI	GKGCMC	1 cut(s)	204
BstUI	CGCG	2 cut(s)	251, 328
BstV1I	GCAGC	1 cut(s)	38
BstXI	CCANNNNNNTGG	1 cut(s)	292
BstZI	CGGCCG	3 cut(s)	12, 213, 246
BsuRI	GGCC	5 cut(s)	14, 90, 215, 248, 335
BtgI	CCRYGG	1 cut(s)	231
BtgZI	GCGATG	1 cut(s)	266
BtsI	GCAGTG	1 cut(s)	310
BtsIMutI	CAGTG	1 cut(s)	310
Cac8I	GCNNGC	1 cut(s)	158
CfoI	GCGC	1 cut(s)	328
Cfr13I	GGNCC	2 cut(s)	89, 333
Csp6I	GTAC	1 cut(s)	398
CviAII	CATG	1 cut(s)	55
CviJI	RGCY	9 cut(s)	14, 90, 105, 160, 215, 230, 248, 335, 387
CviKI_1	RGCY	9 cut(s)	14, 90, 105, 160, 215, 230, 248, 335, 387
CviQI	GTAC	1 cut(s)	398
DrdI	GACNNNNNNGTC	2 cut(s)	77, 116
DriI	GACNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	2 cut(s)	77, 116
EaeI	YGGCCR	3 cut(s)	12, 213, 246
EagI	CGGCCG	3 cut(s)	12, 213, 246
Eam1105I	GACNNNNNGTC	1 cut(s)	44
EclXI	CGGCCG	3 cut(s)	12, 213, 246
Eco24I	GRGCYC	1 cut(s)	162
Eco52I	CGGCCG	3 cut(s)	12, 213, 246
EcoT38I	GRGCYC	1 cut(s)	162
Esp3I	CGTCTC	1 cut(s)	31
FaeI	CATG	1 cut(s)	58
FaiI	YATR	4 cut(s)	56, 227, 270, 287
FatI	CATG	1 cut(s)	54
FauI	CCCGC	2 cut(s)	39, 351
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	5 cut(s)	15, 18, 52, 88, 249
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	5 cut(s)	15, 18, 52, 88, 249
FspBI	CTAG	1 cut(s)	384
GlaI	GCGC	1 cut(s)	327
GluI	GCNGC	5 cut(s)	15, 18, 52, 88, 249
GsuI	CTGGAG	1 cut(s)	314
HaeIII	GGCC	5 cut(s)	14, 90, 215, 248, 335
HapII	CCGG	3 cut(s)	36, 112, 216
HhaI	GCGC	1 cut(s)	328
Hin1II	CATG	1 cut(s)	58
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HinfI	GANTC	5 cut(s)	117, 209, 242, 372, 380
HpaII	CCGG	3 cut(s)	36, 112, 216
HphI	GGTGA	3 cut(s)	112, 157, 166
Hpy166II	GTNNAC	5 cut(s)	82, 202, 262, 310, 400
Hpy188I	TCNGA	1 cut(s)	371
Hpy8I	GTNNAC	5 cut(s)	82, 202, 262, 310, 400
HpyCH4III	ACNGT	2 cut(s)	79, 124
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	2 cut(s)	54, 202
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 176, 332
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	1 cut(s)	58
HspAI	GCGC	1 cut(s)	326
LmnI	GCTCC	1 cut(s)	392
LpnPI	CCDG	7 cut(s)	49, 81, 120, 125, 229, 278, 380
Lsp1109I	GCAGC	1 cut(s)	38
MaeI	CTAG	1 cut(s)	384
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	3 cut(s)	118, 124, 172
MbiI	CCGCTC	1 cut(s)	320
MhlI	GDGCHC	2 cut(s)	162, 204
MlyI	GAGTC	4 cut(s)	126, 203, 236, 389
MnlI	CCTC	2 cut(s)	202, 289
MslI	CAYNNNNRTG	2 cut(s)	230, 267
MspA1I	CMGCKG	1 cut(s)	51
MspI	CCGG	3 cut(s)	36, 112, 216
MspR9I	CCNGG	2 cut(s)	36, 217
Mva1269I	GAATGC	1 cut(s)	5
MvnI	CGCG	2 cut(s)	251, 328
MwoI	GCNNNNNNNGC	3 cut(s)	11, 176, 332
NciI	CCSGG	2 cut(s)	36, 217
NlaIII	CATG	1 cut(s)	58
NlaIV	GGNNCC	1 cut(s)	334
NmeAIII	GCCGAG	4 cut(s)	173, 191, 224, 341
NmuCI	GTSAC	3 cut(s)	118, 124, 172
PcsI	WCGNNNNNNNCGW	1 cut(s)	375
PctI	GAATGC	1 cut(s)	5
PfeI	GAWTC	1 cut(s)	372
PkrI	GCNGC	5 cut(s)	16, 19, 53, 89, 250
PleI	GAGTC	4 cut(s)	125, 203, 236, 388
PpsI	GAGTC	4 cut(s)	125, 203, 236, 388
PspN4I	GGNNCC	1 cut(s)	334
PspPI	GGNCC	2 cut(s)	89, 333
RsaI	GTAC	1 cut(s)	399
RsaNI	GTAC	1 cut(s)	398
RseI	CAYNNNNRTG	2 cut(s)	230, 267
SatI	GCNGC	5 cut(s)	15, 18, 52, 88, 249
Sau96I	GGNCC	2 cut(s)	89, 333
SchI	GAGTC	4 cut(s)	126, 203, 236, 389
ScrFI	CCNGG	2 cut(s)	36, 217
SduI	GDGCHC	2 cut(s)	162, 204
SetI	ASST	3 cut(s)	66, 389, 399
SmiMI	CAYNNNNRTG	2 cut(s)	230, 267
SspMI	CTAG	1 cut(s)	384
StyD4I	CCNGG	2 cut(s)	34, 215
TaaI	ACNGT	2 cut(s)	79, 124
TaiI	ACGT	1 cut(s)	66
TauI	GCSGC	4 cut(s)	17, 20, 90, 251
TfiI	GAWTC	1 cut(s)	372
TscAI	CASTG	1 cut(s)	317
TseFI	GTSAC	3 cut(s)	118, 124, 172
TseI	GCWGC	1 cut(s)	51
Tsp45I	GTSAC	3 cut(s)	118, 124, 172
TspDTI	ATGAA	1 cut(s)	71
TspGWI	ACGGA	1 cut(s)	279
TspRI	CASTG	1 cut(s)	317
VneI	GTGCAC	1 cut(s)	200
XmiI	GTMKAC	1 cut(s)	81
XspI	CTAG	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.