Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8050058.1

Orthogroup ID

OG0006569

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 332

Gene Structure 331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8050058.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 331 bp

atggccgctgtttcacgcgccgcgctcttttgccgtgccggaatcatccgctccatgagcaacatccccgagaacaccgtctacggcggcccaaagtcccagagcccggatcaccgagtcaccgtcacccaaatcaagcagaagcacaacaagggcgaccccatcaccatggtcaccgcctacgactacccctccgcggtccacctcgactccgccggaattgacattgccttggtcggcgactcggctgccatggtcgtgcacggctatgacaccaccctccctataacgctggaagagatgctcgtccactgccgcgctgtggcgcgtg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003864 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006575 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0015939 GO:0015940 GO:0016053 GO:0016740 GO:0016741 GO:0016742 GO:0019752 GO:0032787 GO:0034641 GO:0042364 GO:0042398 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0050897 GO:0051186 GO:0051188 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 ko01110 map00770 map01100 map01110

Pfam Domains

Protein Families

Pantoate_transf

Protein Analysis

110

Amino Acids

11.82

Weight (kDa)

6.95

Isoelectric Point (pI)

45.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46110 AT3G61530 AT3G61530
fragaria_vesca	FvH4_7g15370
malus_domestica	MD07G1131200.v1.1
prunus_persica	Prupe.2G177600_v2.0.a1
pyrus_communis	pycom01g10060 pycom07g12820
rosa_chinensis	RchiOBHm_Chr1g0357691 RchiOBHm_Chr1g0357711
rosa_laevigata	RLG00000028006
rosa_multiflora	Rmu_co7965146.1_g000001 Rmu_co8050058.1_g000001 Rmu_sc0008574.1_g000001 Rmu_ssc0000399.1_g000025 Rmu_ssc0000425.1_g000003
rosa_roxburghii	Rroxscaffold_4G00298580 Rroxscaffold_4G00298590
rosa_rugosa	Rorug01G0257700
rosa_samantha	Rh1AG271800 Rh1BG239000 Rh1CG255700 Rh1CG255800 Rh1DG267400
rosa_wichuraiana	Rw1G024240 Rw1G024250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	51
AccI	GTMKAC	1 cut(s)	81
AccII	CGCG	5 cut(s)	18, 23, 197, 318, 328
AciI	CCGC	9 cut(s)	6, 21, 49, 87, 177, 195, 197, 213, 316
AclWI	GGATC	1 cut(s)	117
AcoI	YGGCCR	1 cut(s)	3
AfiI	CCNNNNNNNGG	3 cut(s)	106, 196, 322
Alw21I	GWGCWC	1 cut(s)	264
Alw44I	GTGCAC	1 cut(s)	260
AlwI	GGATC	1 cut(s)	117
Ama87I	CYCGRG	1 cut(s)	68
AoxI	GGCC	2 cut(s)	3, 88
ApaLI	GTGCAC	1 cut(s)	260
ApeKI	GCWGC	1 cut(s)	248
AspLEI	GCGC	4 cut(s)	20, 25, 320, 328
AspS9I	GGNCC	2 cut(s)	89, 199
AsuC2I	CCSGG	1 cut(s)	107
AsuHPI	GGTGA	5 cut(s)	104, 112, 118, 157, 166
AvaI	CYCGRG	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	199
BaeGI	GKGCMC	1 cut(s)	264
BanII	GRGCYC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	264
BbvI	GCAGC	1 cut(s)	235
BccI	CCATC	1 cut(s)	170
BceAI	ACGGC	3 cut(s)	18, 100, 280
BcgI	CGANNNNNNTGC	2 cut(s)	230, 264
BcnI	CCSGG	1 cut(s)	107
BisI	GCNGC	5 cut(s)	6, 21, 88, 249, 316
BlsI	GCNGC	5 cut(s)	7, 22, 89, 250, 317
Bme1390I	CCNGG	1 cut(s)	107
Bme18I	GGWCC	1 cut(s)	199
BmeT110I	CYCGRG	1 cut(s)	68
BmgT120I	GGNCC	2 cut(s)	89, 199
BmrFI	CCNGG	1 cut(s)	107
BmsI	GCATC	1 cut(s)	291
BpuMI	CCSGG	1 cut(s)	107
BsaJI	CCNNGG	4 cut(s)	168, 195, 231, 252
BsaXI	ACNNNNNCTCC	4 cut(s)	176, 194, 206, 224
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 196, 322
Bse3DI	GCAATG	1 cut(s)	225
BseDI	CCNNGG	4 cut(s)	168, 195, 231, 252
BseGI	GGATG	2 cut(s)	45, 63
BseLI	CCNNNNNNNGG	3 cut(s)	106, 196, 322
BseMI	GCAATG	1 cut(s)	225
BseSI	GKGCMC	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	235
Bsh1236I	CGCG	5 cut(s)	18, 23, 197, 318, 328
BshFI	GGCC	2 cut(s)	5, 90
BsiHKAI	GWGCWC	1 cut(s)	264
BsiHKCI	CYCGRG	1 cut(s)	68
BsiSI	CCGG	3 cut(s)	39, 107, 216
BslFI	GGGAC	1 cut(s)	82
BslI	CCNNNNNNNGG	3 cut(s)	106, 196, 322
BsmFI	GGGAC	1 cut(s)	82
BsnI	GGCC	2 cut(s)	5, 90
BsoBI	CYCGRG	1 cut(s)	68
Bsp1286I	GDGCHC	2 cut(s)	107, 264
Bsp143I	GATC	1 cut(s)	109
Bsp19I	CCATGG	2 cut(s)	168, 252
BspACI	CCGC	9 cut(s)	6, 21, 49, 87, 177, 195, 197, 213, 316
BspANI	GGCC	2 cut(s)	5, 90
BspFNI	CGCG	5 cut(s)	18, 23, 197, 318, 328
BspPI	GGATC	1 cut(s)	117
BsrBI	CCGCTC	1 cut(s)	51
BsrDI	GCAATG	1 cut(s)	225
BssECI	CCNNGG	4 cut(s)	168, 195, 231, 252
BssMI	GATC	1 cut(s)	109
BssT1I	CCWWGG	3 cut(s)	168, 231, 252
Bst4CI	ACNGT	2 cut(s)	79, 124
Bst6I	CTCTTC	1 cut(s)	291
BstDSI	CCRYGG	3 cut(s)	168, 195, 252
BstEII	GGTNACC	1 cut(s)	172
BstF5I	GGATG	2 cut(s)	45, 63
BstFNI	CGCG	5 cut(s)	18, 23, 197, 318, 328
BstHHI	GCGC	4 cut(s)	20, 25, 320, 328
BstKTI	GATC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	109
BstMWI	GCNNNNNNNGC	1 cut(s)	57
BstPI	GGTNACC	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	105
BstSLI	GKGCMC	1 cut(s)	264
BstUI	CGCG	5 cut(s)	18, 23, 197, 318, 328
BstV1I	GCAGC	1 cut(s)	235
BstXI	CCANNNNNNTGG	1 cut(s)	169
BsuRI	GGCC	2 cut(s)	5, 90
BtgI	CCRYGG	3 cut(s)	168, 195, 252
BtsCI	GGATG	2 cut(s)	45, 63
BtsI	GCAGTG	1 cut(s)	310
BtsIMutI	CAGTG	1 cut(s)	310
CfoI	GCGC	4 cut(s)	20, 25, 320, 328
Cfr13I	GGNCC	2 cut(s)	89, 199
Cfr42I	CCGCGG	1 cut(s)	198
CviAII	CATG	3 cut(s)	55, 169, 253
CviJI	RGCY	5 cut(s)	5, 90, 105, 248, 267
CviKI_1	RGCY	5 cut(s)	5, 90, 105, 248, 267
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
EciI	GGCGGA	1 cut(s)	202
Eco130I	CCWWGG	3 cut(s)	168, 231, 252
Eco24I	GRGCYC	1 cut(s)	107
Eco47I	GGWCC	1 cut(s)	199
Eco88I	CYCGRG	1 cut(s)	68
Eco91I	GGTNACC	1 cut(s)	172
EcoO65I	GGTNACC	1 cut(s)	172
EcoT14I	CCWWGG	3 cut(s)	168, 231, 252
EcoT38I	GRGCYC	1 cut(s)	107
ErhI	CCWWGG	3 cut(s)	168, 231, 252
FaeI	CATG	3 cut(s)	58, 172, 256
FaiI	YATR	5 cut(s)	56, 170, 254, 270, 287
FaqI	GGGAC	1 cut(s)	82
FatI	CATG	3 cut(s)	54, 168, 252
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	5 cut(s)	6, 21, 88, 249, 316
FokI	GGATG	2 cut(s)	32, 50
FriOI	GRGCYC	1 cut(s)	107
Fsp4HI	GCNGC	5 cut(s)	6, 21, 88, 249, 316
GlaI	GCGC	4 cut(s)	19, 24, 319, 327
GluI	GCNGC	5 cut(s)	6, 21, 88, 249, 316
HaeIII	GGCC	2 cut(s)	5, 90
HapII	CCGG	3 cut(s)	39, 107, 216
HhaI	GCGC	4 cut(s)	20, 25, 320, 328
Hin1II	CATG	3 cut(s)	58, 172, 256
Hin6I	GCGC	4 cut(s)	18, 23, 318, 326
HinP1I	GCGC	4 cut(s)	18, 23, 318, 326
HinfI	GANTC	4 cut(s)	42, 117, 209, 242
HpaII	CCGG	3 cut(s)	39, 107, 216
HphI	GGTGA	5 cut(s)	104, 112, 118, 157, 166
Hpy166II	GTNNAC	4 cut(s)	82, 202, 262, 310
Hpy8I	GTNNAC	4 cut(s)	82, 202, 262, 310
HpyCH4III	ACNGT	2 cut(s)	79, 124
HpyCH4V	TGCA	1 cut(s)	262
HpyF10VI	GCNNNNNNNGC	1 cut(s)	57
Hsp92II	CATG	3 cut(s)	58, 172, 256
HspAI	GCGC	4 cut(s)	18, 23, 318, 326
KspI	CCGCGG	1 cut(s)	198
Kzo9I	GATC	1 cut(s)	109
LmnI	GCTCC	1 cut(s)	56
LpnPI	CCDG	5 cut(s)	52, 113, 120, 229, 278
Lsp1109I	GCAGC	1 cut(s)	235
LweI	GCATC	1 cut(s)	291
MaeIII	GTNAC	3 cut(s)	118, 124, 172
MalI	GATC	1 cut(s)	111
MbiI	CCGCTC	1 cut(s)	51
MboI	GATC	1 cut(s)	109
MboII	GAAGA	1 cut(s)	308
MhlI	GDGCHC	2 cut(s)	107, 264
MluCI	AATT	1 cut(s)	219
MlyI	GAGTC	3 cut(s)	126, 203, 236
MnlI	CCTC	3 cut(s)	202, 215, 290
MslI	CAYNNNNRTG	3 cut(s)	167, 257, 267
MspA1I	CMGCKG	2 cut(s)	8, 197
MspI	CCGG	3 cut(s)	39, 107, 216
MspR9I	CCNGG	1 cut(s)	107
MteI	GCGCNGCGC	1 cut(s)	21
MvnI	CGCG	5 cut(s)	18, 23, 197, 318, 328
MwoI	GCNNNNNNNGC	1 cut(s)	57
NciI	CCSGG	1 cut(s)	107
NcoI	CCATGG	2 cut(s)	168, 252
NdeII	GATC	1 cut(s)	109
NlaIII	CATG	3 cut(s)	58, 172, 256
NmeAIII	GCCGAG	1 cut(s)	224
NmuCI	GTSAC	3 cut(s)	118, 124, 172
PfeI	GAWTC	1 cut(s)	42
PkrI	GCNGC	5 cut(s)	7, 22, 89, 250, 317
PleI	GAGTC	3 cut(s)	125, 203, 236
PpsI	GAGTC	3 cut(s)	125, 203, 236
PspEI	GGTNACC	1 cut(s)	172
PspPI	GGNCC	2 cut(s)	89, 199
PsrI	GAACNNNNNNTAC	2 cut(s)	65, 97
RseI	CAYNNNNRTG	3 cut(s)	167, 257, 267
SacII	CCGCGG	1 cut(s)	198
SatI	GCNGC	5 cut(s)	6, 21, 88, 249, 316
Sau3AI	GATC	1 cut(s)	109
Sau96I	GGNCC	2 cut(s)	89, 199
SchI	GAGTC	3 cut(s)	126, 203, 236
ScrFI	CCNGG	1 cut(s)	107
SduI	GDGCHC	2 cut(s)	107, 264
SetI	ASST	1 cut(s)	207
SfaNI	GCATC	1 cut(s)	291
Sfr303I	CCGCGG	1 cut(s)	198
SgrBI	CCGCGG	1 cut(s)	198
SinI	GGWCC	1 cut(s)	199
SmiMI	CAYNNNNRTG	3 cut(s)	167, 257, 267
Sse9I	AATT	1 cut(s)	219
SsiI	CCGC	9 cut(s)	6, 21, 49, 87, 177, 195, 197, 213, 316
StyD4I	CCNGG	1 cut(s)	105
StyI	CCWWGG	3 cut(s)	168, 231, 252
TaaI	ACNGT	2 cut(s)	79, 124
TaqI	TCGA	1 cut(s)	207
TasI	AATT	1 cut(s)	219
TauI	GCSGC	4 cut(s)	8, 23, 90, 318
TfiI	GAWTC	1 cut(s)	42
TscAI	CASTG	1 cut(s)	317
TseFI	GTSAC	3 cut(s)	118, 124, 172
TseI	GCWGC	1 cut(s)	248
Tsp45I	GTSAC	3 cut(s)	118, 124, 172
TspRI	CASTG	1 cut(s)	317
VneI	GTGCAC	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	199
XmiI	GTMKAC	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.