Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003543

Physical Location & Seq

Genomic Coordinates Reverse (-)

22956000 .. 22956966

Gene Structure 967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G61980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGCCGTCGTTAACACTGAGCATTCGTTTCCTTTTCTTAGTTCTCTGCTTGATCGGTTTACAAGCTGCGGATGATTTCCCAGATAAATCCCGCGGTGACGTATGCCCTCGGGTTAAGGATCGGGGTGGATGCACAATCAACTGTTTCCGGGCGGATCCGGTTTGTGGAACCGATGGAGTCACGTACTGGTGCGGTTGTCCCGACGCAGCTTGCCATGGCGCTCGCGTAGTCAAAAAAGGAGCTTGTGACACAGGTAATGCAGGAAGTGCTTCTGTTCCTGGACAAGCTTTGTTATTGATTCATATTGTTTGGCTCTTCTTGCTCGGACTCTCTCTTCTCGTTGGTGGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

12.29

Weight (kDa)

7.51

Isoelectric Point (pI)

35.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61980 AT4G01575
fragaria_vesca	FvH4_6g41470 FvH4_7g33250
malus_domestica	MD01G1231000.v1.1 MD07G1302300.v1.1 MD09G1119600.v1.1 MD17G1110400.v1.1
prunus_persica	Prupe.2G321500_v2.0.a1 Prupe.3G204600_v2.0.a1
pyrus_communis	pycom01g23900 pycom09g04440 pycom17g10270
rosa_chinensis	RchiOBHm_Chr1g0383241 RchiOBHm_Chr2g0157141
rosa_laevigata	RLG00000020964 RLG00000026120
rosa_multiflora	Rmu_co8303603.1_g000001 Rmu_sc0006282.1_g000025 Rmu_sc0007173.1_g000025
rosa_roxburghii	Rroxscaffold_2G00092500 Rroxscaffold_4G00277480
rosa_rugosa	Rorug01G0439700 Rorug02G0457700
rosa_samantha	Rh1AG465400 Rh1BG422800 Rh1CG436000 Rh1DG455500 Rh2AG523400 Rh2BG537800 Rh2CG508100 Rh2DG546500
rosa_wichuraiana	Rw1G040700 Rw2G031080 Rw2G043280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	93, 225
AciI	CCGC	5 cut(s)	68, 91, 93, 152, 192
AclWI	GGATC	3 cut(s)	126, 149, 162
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	164
AjnI	CCWGG	1 cut(s)	277
AluBI	AGCT	4 cut(s)	65, 209, 242, 287
AluI	AGCT	4 cut(s)	65, 209, 242, 287
AlwI	GGATC	3 cut(s)	126, 149, 162
Ama87I	CYCGRG	1 cut(s)	108
ApeKI	GCWGC	2 cut(s)	65, 206
Asp700I	GAANNNNTTC	1 cut(s)	268
AspLEI	GCGC	1 cut(s)	221
AsuC2I	CCSGG	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	107
AvaI	CYCGRG	1 cut(s)	108
BamHI	GGATCC	1 cut(s)	154
BbvI	GCAGC	2 cut(s)	52, 218
BccI	CCATC	1 cut(s)	167
BciT130I	CCWGG	1 cut(s)	279
BcnI	CCSGG	1 cut(s)	149
BfoI	RGCGCY	1 cut(s)	222
BisI	GCNGC	2 cut(s)	66, 207
BlsI	GCNGC	2 cut(s)	67, 208
Bme1390I	CCNGG	2 cut(s)	149, 279
BmeT110I	CYCGRG	1 cut(s)	108
BmiI	GGNNCC	2 cut(s)	156, 169
BmrFI	CCNGG	2 cut(s)	149, 279
BmsI	GCATC	1 cut(s)	119
BpuMI	CCSGG	1 cut(s)	149
BsaAI	YACGTR	1 cut(s)	183
BsaJI	CCNNGG	3 cut(s)	91, 107, 214
BsaWI	WCCGGW	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	191
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	3 cut(s)	91, 107, 214
BseGI	GGATG	2 cut(s)	76, 134
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMII	CTCAG	1 cut(s)	8
BseNI	ACTGG	1 cut(s)	191
BseXI	GCAGC	2 cut(s)	52, 218
Bsh1236I	CGCG	2 cut(s)	93, 225
BsiHKCI	CYCGRG	1 cut(s)	108
BsiSI	CCGG	2 cut(s)	148, 158
BslFI	GGGAC	1 cut(s)	183
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	183
BsmI	GAATGC	1 cut(s)	21
BsoBI	CYCGRG	1 cut(s)	108
Bsp143I	GATC	3 cut(s)	51, 118, 154
Bsp19I	CCATGG	1 cut(s)	214
BspACI	CCGC	5 cut(s)	68, 91, 93, 152, 192
BspCNI	CTCAG	1 cut(s)	9
BspFNI	CGCG	2 cut(s)	93, 225
BspLI	GGNNCC	2 cut(s)	156, 169
BspPI	GGATC	3 cut(s)	126, 149, 162
BspQI	GCTCTTC	1 cut(s)	320
BsrI	ACTGG	1 cut(s)	191
BssECI	CCNNGG	3 cut(s)	91, 107, 214
BssMI	GATC	3 cut(s)	51, 118, 154
BssT1I	CCWWGG	1 cut(s)	214
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	1 cut(s)	143
Bst6I	CTCTTC	2 cut(s)	320, 339
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstBAI	YACGTR	1 cut(s)	183
BstC8I	GCNNGC	2 cut(s)	211, 223
BstDEI	CTNAG	2 cut(s)	17, 37
BstDSI	CCRYGG	2 cut(s)	91, 214
BstF5I	GGATG	2 cut(s)	76, 134
BstFNI	CGCG	2 cut(s)	93, 225
BstH2I	RGCGCY	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	3 cut(s)	54, 121, 157
BstMBI	GATC	3 cut(s)	51, 118, 154
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 319
BstNI	CCWGG	1 cut(s)	279
BstSCI	CCNGG	2 cut(s)	147, 277
BstUI	CGCG	2 cut(s)	93, 225
BstV1I	GCAGC	2 cut(s)	52, 218
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
BtgI	CCRYGG	2 cut(s)	91, 214
BtsCI	GGATG	2 cut(s)	76, 134
BtsIMutI	CAGTG	1 cut(s)	14
Cac8I	GCNNGC	2 cut(s)	211, 223
CfoI	GCGC	1 cut(s)	221
Cfr42I	CCGCGG	1 cut(s)	94
CseI	GACGC	1 cut(s)	212
Csp6I	GTAC	1 cut(s)	184
CviAII	CATG	1 cut(s)	215
CviJI	RGCY	5 cut(s)	65, 209, 242, 287, 313
CviKI_1	RGCY	5 cut(s)	65, 209, 242, 287, 313
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	2 cut(s)	17, 37
DpnI	GATC	3 cut(s)	53, 120, 156
DpnII	GATC	3 cut(s)	51, 118, 154
Eam1104I	CTCTTC	2 cut(s)	320, 339
EarI	CTCTTC	2 cut(s)	320, 339
EciI	GGCGGA	1 cut(s)	167
Eco130I	CCWWGG	1 cut(s)	214
Eco88I	CYCGRG	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	214
FaeI	CATG	1 cut(s)	218
FaiI	YATR	3 cut(s)	103, 216, 303
FaqI	GGGAC	1 cut(s)	183
FatI	CATG	1 cut(s)	214
FauI	CCCGC	1 cut(s)	98
Fnu4HI	GCNGC	2 cut(s)	66, 207
FokI	GGATG	2 cut(s)	83, 141
Fsp4HI	GCNGC	2 cut(s)	66, 207
GlaI	GCGC	1 cut(s)	220
GluI	GCNGC	2 cut(s)	66, 207
HaeII	RGCGCY	1 cut(s)	222
HapII	CCGG	2 cut(s)	148, 158
HgaI	GACGC	1 cut(s)	212
HhaI	GCGC	1 cut(s)	221
Hin1II	CATG	1 cut(s)	218
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HindIII	AAGCTT	1 cut(s)	285
HinfI	GANTC	3 cut(s)	177, 298, 327
HpaI	GTTAAC	1 cut(s)	12
HpaII	CCGG	2 cut(s)	148, 158
HphI	GGTGA	1 cut(s)	107
Hpy166II	GTNNAC	2 cut(s)	12, 59
Hpy188I	TCNGA	2 cut(s)	326, 353
Hpy188III	TCNNGA	1 cut(s)	200
Hpy8I	GTNNAC	2 cut(s)	12, 59
Hpy99I	CGWCG	2 cut(s)	10, 206
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4IV	ACGT	2 cut(s)	99, 182
HpyCH4V	TGCA	2 cut(s)	132, 260
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 319
HpyF3I	CTNAG	2 cut(s)	17, 37
HpySE526I	ACGT	2 cut(s)	99, 182
Hsp92II	CATG	1 cut(s)	218
HspAI	GCGC	1 cut(s)	219
KspAI	GTTAAC	1 cut(s)	12
KspI	CCGCGG	1 cut(s)	94
Kzo9I	GATC	3 cut(s)	51, 118, 154
LguI	GCTCTTC	1 cut(s)	320
LmnI	GCTCC	1 cut(s)	239
LpnPI	CCDG	8 cut(s)	93, 161, 171, 172, 237, 246, 264, 291
Lsp1109I	GCAGC	2 cut(s)	52, 218
LweI	GCATC	1 cut(s)	119
MaeII	ACGT	2 cut(s)	99, 182
MaeIII	GTNAC	3 cut(s)	95, 178, 245
MalI	GATC	3 cut(s)	53, 120, 156
MboI	GATC	3 cut(s)	51, 118, 154
MboII	GAAGA	2 cut(s)	307, 326
MflI	RGATCY	1 cut(s)	154
MlyI	GAGTC	2 cut(s)	186, 321
MnlI	CCTC	1 cut(s)	117
MroXI	GAANNNNTTC	1 cut(s)	268
MseI	TTAA	2 cut(s)	11, 114
MspA1I	CMGCKG	1 cut(s)	93
MspI	CCGG	2 cut(s)	148, 158
MspR9I	CCNGG	2 cut(s)	149, 279
Mva1269I	GAATGC	1 cut(s)	21
MvaI	CCWGG	1 cut(s)	279
MvnI	CGCG	2 cut(s)	93, 225
MwoI	GCNNNNNNNGC	2 cut(s)	266, 319
NciI	CCSGG	1 cut(s)	149
NcoI	CCATGG	1 cut(s)	214
NdeII	GATC	3 cut(s)	51, 118, 154
NlaIII	CATG	1 cut(s)	218
NlaIV	GGNNCC	2 cut(s)	156, 169
NmuCI	GTSAC	3 cut(s)	95, 178, 245
PciSI	GCTCTTC	1 cut(s)	320
PctI	GAATGC	1 cut(s)	21
PdmI	GAANNNNTTC	1 cut(s)	268
PfeI	GAWTC	1 cut(s)	298
PfoI	TCCNGGA	1 cut(s)	277
PkrI	GCNGC	2 cut(s)	67, 208
PleI	GAGTC	2 cut(s)	185, 321
PpsI	GAGTC	2 cut(s)	185, 321
Ppu21I	YACGTR	1 cut(s)	183
Psp6I	CCWGG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	2 cut(s)	156, 169
PsuI	RGATCY	1 cut(s)	154
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
SacII	CCGCGG	1 cut(s)	94
SapI	GCTCTTC	1 cut(s)	320
SaqAI	TTAA	2 cut(s)	11, 114
SatI	GCNGC	2 cut(s)	66, 207
Sau3AI	GATC	3 cut(s)	51, 118, 154
SchI	GAGTC	2 cut(s)	186, 321
ScrFI	CCNGG	2 cut(s)	149, 279
SetI	ASST	7 cut(s)	67, 102, 185, 211, 244, 256, 289
SfaNI	GCATC	1 cut(s)	119
Sfr303I	CCGCGG	1 cut(s)	94
SgrBI	CCGCGG	1 cut(s)	94
SsiI	CCGC	5 cut(s)	68, 91, 93, 152, 192
StyD4I	CCNGG	2 cut(s)	147, 277
StyI	CCWWGG	1 cut(s)	214
TaaI	ACNGT	1 cut(s)	143
TaiI	ACGT	2 cut(s)	102, 185
TfiI	GAWTC	1 cut(s)	298
Tru1I	TTAA	2 cut(s)	11, 114
Tru9I	TTAA	2 cut(s)	11, 114
TscAI	CASTG	1 cut(s)	21
TseFI	GTSAC	3 cut(s)	95, 178, 245
TseI	GCWGC	2 cut(s)	65, 206
Tsp45I	GTSAC	3 cut(s)	95, 178, 245
TspDTI	ATGAA	1 cut(s)	290
TspRI	CASTG	1 cut(s)	21
XmnI	GAANNNNTTC	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.