Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0003543

Physical Location & Seq

Genomic Coordinates Reverse (-)

3271448 .. 3271864

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g04440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGATACCCAATTCCCCAAATCCCTAATTTCTATTTTTTCCCTATTTCTCTTCGCCTTCTTCATCGTCCTCTGCTCCTTCCCCGCCGTCCGATCAGAACCAGAATCCGTATCCGAACCCACCATCATCAGATTGCCCTCTGAATCCGAGCCCGCGGACGCCTGCGGCCGATCGACCCGGTCAGCCCCCTTGTGCCCCGTCAATTGCTTCCGTCCCGACCCGGTCTGCGGCGTGGACGGCGTGACGTACTGGTGTGGGTGCCAAGATGCCCAATGCGCTGGTGTCAAGGTGGAGAAATTAGGGTTTTGTGAGGTGGGTAGCGGCGGCTCCGCCCCCCACTCTGCTCAAGCTCTGCTTTTGGTTCACATGGTTTGGCTCATCGTCCTCGGCTTCTCCGTCATGTTCGGCCTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

14.84

Weight (kDa)

4.97

Isoelectric Point (pI)

46.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61980 AT4G01575
fragaria_vesca	FvH4_6g41470 FvH4_7g33250
malus_domestica	MD01G1231000.v1.1 MD07G1302300.v1.1 MD09G1119600.v1.1 MD17G1110400.v1.1
prunus_persica	Prupe.2G321500_v2.0.a1 Prupe.3G204600_v2.0.a1
pyrus_communis	pycom01g23900 pycom09g04440 pycom17g10270
rosa_chinensis	RchiOBHm_Chr1g0383241 RchiOBHm_Chr2g0157141
rosa_laevigata	RLG00000020964 RLG00000026120
rosa_multiflora	Rmu_co8303603.1_g000001 Rmu_sc0006282.1_g000025 Rmu_sc0007173.1_g000025
rosa_roxburghii	Rroxscaffold_2G00092500 Rroxscaffold_4G00277480
rosa_rugosa	Rorug01G0439700 Rorug02G0457700
rosa_samantha	Rh1AG465400 Rh1BG422800 Rh1CG436000 Rh1DG455500 Rh2AG523400 Rh2BG537800 Rh2CG508100 Rh2DG546500
rosa_wichuraiana	Rw1G040700 Rw2G031080 Rw2G043280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	258
AccII	CGCG	1 cut(s)	155
AciI	CCGC	8 cut(s)	84, 153, 155, 165, 228, 321, 324, 330
AcoI	YGGCCR	1 cut(s)	166
AcyI	GRCGYC	1 cut(s)	159
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	1 cut(s)	227
AluBI	AGCT	1 cut(s)	350
AluI	AGCT	1 cut(s)	350
AoxI	GGCC	2 cut(s)	166, 406
AspLEI	GCGC	1 cut(s)	278
AsuC2I	CCSGG	2 cut(s)	178, 221
BaeGI	GKGCMC	1 cut(s)	197
BanI	GGYRCC	1 cut(s)	258
BanII	GRGCYC	1 cut(s)	153
BccI	CCATC	1 cut(s)	131
BceAI	ACGGC	2 cut(s)	71, 253
BciVI	GTATCC	1 cut(s)	121
BcnI	CCSGG	2 cut(s)	178, 221
BfuI	GTATCC	1 cut(s)	121
BisI	GCNGC	4 cut(s)	166, 229, 322, 325
BlsI	GCNGC	4 cut(s)	167, 230, 323, 326
Bme1390I	CCNGG	2 cut(s)	178, 221
BmiI	GGNNCC	2 cut(s)	260, 328
BmrFI	CCNGG	2 cut(s)	178, 221
BmsI	GCATC	1 cut(s)	256
BpuEI	CTTGAG	1 cut(s)	330
BpuMI	CCSGG	2 cut(s)	178, 221
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	153, 385
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse1I	ACTGG	1 cut(s)	254
BseDI	CCNNGG	2 cut(s)	153, 385
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseNI	ACTGG	1 cut(s)	254
BseSI	GKGCMC	1 cut(s)	197
BseX3I	CGGCCG	1 cut(s)	166
Bsh1236I	CGCG	1 cut(s)	155
Bsh1285I	CGRYCG	2 cut(s)	169, 173
BshFI	GGCC	2 cut(s)	168, 408
BshNI	GGYRCC	1 cut(s)	258
BsiEI	CGRYCG	2 cut(s)	169, 173
BsiSI	CCGG	2 cut(s)	178, 221
BslFI	GGGAC	1 cut(s)	198
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	198
BsnI	GGCC	2 cut(s)	168, 408
Bsp1286I	GDGCHC	2 cut(s)	153, 197
Bsp143I	GATC	2 cut(s)	92, 170
BspACI	CCGC	8 cut(s)	84, 153, 155, 165, 228, 321, 324, 330
BspANI	GGCC	2 cut(s)	168, 408
BspFNI	CGCG	1 cut(s)	155
BspLI	GGNNCC	2 cut(s)	260, 328
BspT107I	GGYRCC	1 cut(s)	258
BsrI	ACTGG	1 cut(s)	254
BssECI	CCNNGG	2 cut(s)	153, 385
BssMI	GATC	2 cut(s)	92, 170
BssNI	GRCGYC	1 cut(s)	159
Bst6I	CTCTTC	1 cut(s)	56
BstACI	GRCGYC	1 cut(s)	159
BstC8I	GCNNGC	2 cut(s)	153, 163
BstDSI	CCRYGG	1 cut(s)	153
BstFNI	CGCG	1 cut(s)	155
BstHHI	GCGC	1 cut(s)	278
BstKTI	GATC	2 cut(s)	95, 173
BstMBI	GATC	2 cut(s)	92, 170
BstMCI	CGRYCG	2 cut(s)	169, 173
BstMWI	GCNNNNNNNGC	2 cut(s)	237, 275
BstSCI	CCNGG	2 cut(s)	176, 219
BstSLI	GKGCMC	1 cut(s)	197
BstUI	CGCG	1 cut(s)	155
BstXI	CCANNNNNNTGG	1 cut(s)	278
BstZI	CGGCCG	1 cut(s)	166
BsuI	GTATCC	1 cut(s)	121
BsuRI	GGCC	2 cut(s)	168, 408
BtgI	CCRYGG	1 cut(s)	153
Cac8I	GCNNGC	2 cut(s)	153, 163
CfoI	GCGC	1 cut(s)	278
Cfr42I	CCGCGG	1 cut(s)	156
CseI	GACGC	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	2 cut(s)	367, 400
CviJI	RGCY	8 cut(s)	151, 168, 185, 327, 350, 376, 390, 408
CviKI_1	RGCY	8 cut(s)	151, 168, 185, 327, 350, 376, 390, 408
CviQI	GTAC	1 cut(s)	247
DpnI	GATC	2 cut(s)	94, 172
DpnII	GATC	2 cut(s)	92, 170
EaeI	YGGCCR	1 cut(s)	166
EagI	CGGCCG	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
EciI	GGCGGA	1 cut(s)	319
EclXI	CGGCCG	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	153
Eco52I	CGGCCG	1 cut(s)	166
EcoT38I	GRGCYC	1 cut(s)	153
FaeI	CATG	2 cut(s)	370, 403
FaiI	YATR	2 cut(s)	368, 401
FalI	AAGNNNNNCTT	2 cut(s)	339, 371
FaqI	GGGAC	1 cut(s)	198
FatI	CATG	2 cut(s)	366, 399
FauI	CCCGC	2 cut(s)	91, 160
Fnu4HI	GCNGC	4 cut(s)	166, 229, 322, 325
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	4 cut(s)	166, 229, 322, 325
GlaI	GCGC	1 cut(s)	277
GluI	GCNGC	4 cut(s)	166, 229, 322, 325
HaeIII	GGCC	2 cut(s)	168, 408
HapII	CCGG	2 cut(s)	178, 221
HgaI	GACGC	1 cut(s)	167
HhaI	GCGC	1 cut(s)	278
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	2 cut(s)	370, 403
Hin6I	GCGC	1 cut(s)	276
HinP1I	GCGC	1 cut(s)	276
HinfI	GANTC	2 cut(s)	104, 143
HpaII	CCGG	2 cut(s)	178, 221
Hpy166II	GTNNAC	2 cut(s)	235, 364
Hpy188I	TCNGA	7 cut(s)	92, 97, 115, 131, 142, 148, 416
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	2 cut(s)	235, 364
HpyAV	CCTTC	2 cut(s)	67, 88
HpyCH4IV	ACGT	1 cut(s)	245
HpyF10VI	GCNNNNNNNGC	2 cut(s)	237, 275
HpySE526I	ACGT	1 cut(s)	245
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	2 cut(s)	370, 403
HspAI	GCGC	1 cut(s)	276
KspI	CCGCGG	1 cut(s)	156
Kzo9I	GATC	2 cut(s)	92, 170
LmnI	GCTCC	2 cut(s)	80, 332
LpnPI	CCDG	6 cut(s)	114, 175, 191, 234, 235, 264
LweI	GCATC	1 cut(s)	256
MaeII	ACGT	1 cut(s)	245
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	2 cut(s)	94, 172
MboI	GATC	2 cut(s)	92, 170
MboII	GAAGA	2 cut(s)	43, 52
MfeI	CAATTG	1 cut(s)	202
MhlI	GDGCHC	2 cut(s)	153, 197
MluCI	AATT	4 cut(s)	11, 27, 202, 296
MnlI	CCTC	4 cut(s)	80, 148, 304, 395
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	2 cut(s)	178, 221
MspR9I	CCNGG	2 cut(s)	178, 221
MunI	CAATTG	1 cut(s)	202
MvnI	CGCG	1 cut(s)	155
MwoI	GCNNNNNNNGC	2 cut(s)	237, 275
NciI	CCSGG	2 cut(s)	178, 221
NdeII	GATC	2 cut(s)	92, 170
NlaIII	CATG	2 cut(s)	370, 403
NlaIV	GGNNCC	2 cut(s)	260, 328
NmeAIII	GCCGAG	1 cut(s)	366
NmuCI	GTSAC	1 cut(s)	241
PcsI	WCGNNNNNNNCGW	1 cut(s)	393
PfeI	GAWTC	2 cut(s)	104, 143
PflFI	GACNNNGTC	2 cut(s)	178, 221
PkrI	GCNGC	4 cut(s)	167, 230, 323, 326
Ple19I	CGATCG	1 cut(s)	173
PspN4I	GGNNCC	2 cut(s)	260, 328
PsyI	GACNNNGTC	2 cut(s)	178, 221
PvuI	CGATCG	1 cut(s)	173
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SacII	CCGCGG	1 cut(s)	156
SatI	GCNGC	4 cut(s)	166, 229, 322, 325
Sau3AI	GATC	2 cut(s)	92, 170
ScrFI	CCNGG	2 cut(s)	178, 221
SduI	GDGCHC	2 cut(s)	153, 197
SetI	ASST	4 cut(s)	248, 291, 315, 352
SfaNI	GCATC	1 cut(s)	256
Sfr303I	CCGCGG	1 cut(s)	156
SgrBI	CCGCGG	1 cut(s)	156
SmlI	CTYRAG	1 cut(s)	345
SmoI	CTYRAG	1 cut(s)	345
Sse9I	AATT	4 cut(s)	11, 27, 202, 296
SsiI	CCGC	8 cut(s)	84, 153, 155, 165, 228, 321, 324, 330
StyD4I	CCNGG	2 cut(s)	176, 219
TaiI	ACGT	1 cut(s)	248
TaqI	TCGA	1 cut(s)	173
TasI	AATT	4 cut(s)	11, 27, 202, 296
TauI	GCSGC	4 cut(s)	168, 231, 324, 327
TfiI	GAWTC	2 cut(s)	104, 143
TseFI	GTSAC	1 cut(s)	241
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	1 cut(s)	52
TspGWI	ACGGA	3 cut(s)	97, 200, 385
Tth111I	GACNNNGTC	2 cut(s)	178, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.