Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003543

Physical Location & Seq

Genomic Coordinates Reverse (-)

681862 .. 682601

Gene Structure 740 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G01575.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGAAATTCAAGATCCGAATCTCGGCAATGTCGACAATCTCGCCGTCATTAGCCGTAATTGCGTTTCTTTTTCTGATTCTTCTGAATCTATCTTCGGTTTTCGCTGATCCTTCGACGGAAGGAGGAGAGATTATTAGGTTACCTTCGGAGAAGATCAACGGTGAAAAAAACAGAGGCGAATTCTGTGAAGGAATTGCTAAACCGGCTTCGTGTCCGGTTCAGTGTTTCAGGCCTGATCCGGTTTGCGGTGAAGACAGCGTTACTTACTGGTGCGGTTGTGCAGATGCTTTGTGCCATGGTGTTCGTGTTGTGAAACAAGGAGCTTGTGATGTTGGTAATGGTGTTGGTTTGTCTGTTCCTGGACAAGCTCTGCTTTTGATACACATTGTCTGGATGATGCTTCTTGGGTTTTCTATTCTCTTTGGGCTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

15.42

Weight (kDa)

6.07

Isoelectric Point (pI)

41.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61980 AT4G01575
fragaria_vesca	FvH4_6g41470 FvH4_7g33250
malus_domestica	MD01G1231000.v1.1 MD07G1302300.v1.1 MD09G1119600.v1.1 MD17G1110400.v1.1
prunus_persica	Prupe.2G321500_v2.0.a1 Prupe.3G204600_v2.0.a1
pyrus_communis	pycom01g23900 pycom09g04440 pycom17g10270
rosa_chinensis	RchiOBHm_Chr1g0383241 RchiOBHm_Chr2g0157141
rosa_laevigata	RLG00000020964 RLG00000026120
rosa_multiflora	Rmu_co8303603.1_g000001 Rmu_sc0006282.1_g000025 Rmu_sc0007173.1_g000025
rosa_roxburghii	Rroxscaffold_2G00092500 Rroxscaffold_4G00277480
rosa_rugosa	Rorug01G0439700 Rorug02G0457700
rosa_samantha	Rh1AG465400 Rh1BG422800 Rh1CG436000 Rh1DG455500 Rh2AG523400 Rh2BG537800 Rh2CG508100 Rh2DG546500
rosa_wichuraiana	Rw1G040700 Rw2G031080 Rw2G043280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	32
AciI	CCGC	2 cut(s)	246, 273
AclWI	GGATC	3 cut(s)	7, 101, 230
AcsI	RAATTY	2 cut(s)	5, 179
AfiI	CCNNNNNNNGG	2 cut(s)	22, 245
AgsI	TTSAA	1 cut(s)	10
AjnI	CCWGG	1 cut(s)	358
AluBI	AGCT	2 cut(s)	323, 368
AluI	AGCT	2 cut(s)	323, 368
AlwI	GGATC	3 cut(s)	7, 101, 230
AoxI	GGCC	1 cut(s)	230
ApoI	RAATTY	2 cut(s)	5, 179
AsuHPI	GGTGA	2 cut(s)	173, 260
BanII	GRGCYC	1 cut(s)	429
BbsI	GAAGAC	1 cut(s)	258
BceAI	ACGGC	2 cut(s)	28, 38
BciT130I	CCWGG	1 cut(s)	360
Bme1390I	CCNGG	1 cut(s)	360
BmrFI	CCNGG	1 cut(s)	360
BmsI	GCATC	2 cut(s)	274, 387
BpiI	GAAGAC	1 cut(s)	258
BsaBI	GATNNNNATC	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	295
BsaWI	WCCGGW	2 cut(s)	214, 238
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 245
Bse118I	RCCGGY	1 cut(s)	202
Bse1I	ACTGG	1 cut(s)	272
Bse3DI	GCAATG	1 cut(s)	33
Bse8I	GATNNNNATC	1 cut(s)	17
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	1 cut(s)	295
BseGI	GGATG	1 cut(s)	399
BseJI	GATNNNNATC	1 cut(s)	17
BseLI	CCNNNNNNNGG	2 cut(s)	22, 245
BseMI	GCAATG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	272
BseRI	GAGGAG	1 cut(s)	138
BsgI	GTGCAG	1 cut(s)	300
BshFI	GGCC	1 cut(s)	232
BsiSI	CCGG	3 cut(s)	203, 215, 239
BslI	CCNNNNNNNGG	2 cut(s)	22, 245
BsnI	GGCC	1 cut(s)	232
Bsp1286I	GDGCHC	1 cut(s)	429
Bsp143I	GATC	4 cut(s)	12, 106, 153, 235
Bsp19I	CCATGG	1 cut(s)	295
BspACI	CCGC	2 cut(s)	246, 273
BspANI	GGCC	1 cut(s)	232
BspPI	GGATC	3 cut(s)	7, 101, 230
BsrDI	GCAATG	1 cut(s)	33
BsrFI	RCCGGY	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	272
BssAI	RCCGGY	1 cut(s)	202
BssECI	CCNNGG	1 cut(s)	295
BssMI	GATC	4 cut(s)	12, 106, 153, 235
BssT1I	CCWWGG	1 cut(s)	295
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	1 cut(s)	161
BstDSI	CCRYGG	1 cut(s)	295
BstEII	GGTNACC	1 cut(s)	138
BstF5I	GGATG	1 cut(s)	399
BstKTI	GATC	4 cut(s)	15, 109, 156, 238
BstMBI	GATC	4 cut(s)	12, 106, 153, 235
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 203
BstNI	CCWGG	1 cut(s)	360
BstPI	GGTNACC	1 cut(s)	138
BstSCI	CCNGG	1 cut(s)	358
BstV2I	GAAGAC	1 cut(s)	258
BstX2I	RGATCY	1 cut(s)	12
BstYI	RGATCY	1 cut(s)	12
BsuRI	GGCC	1 cut(s)	232
BtgI	CCRYGG	1 cut(s)	295
BtsCI	GGATG	1 cut(s)	399
BtsIMutI	CAGTG	1 cut(s)	227
Cfr10I	RCCGGY	1 cut(s)	202
CviAII	CATG	1 cut(s)	296
CviJI	RGCY	6 cut(s)	53, 206, 232, 323, 368, 427
CviKI_1	RGCY	6 cut(s)	53, 206, 232, 323, 368, 427
DpnI	GATC	4 cut(s)	14, 108, 155, 237
DpnII	GATC	4 cut(s)	12, 106, 153, 235
Eco130I	CCWWGG	1 cut(s)	295
Eco147I	AGGCCT	1 cut(s)	232
Eco24I	GRGCYC	1 cut(s)	429
Eco91I	GGTNACC	1 cut(s)	138
EcoO65I	GGTNACC	1 cut(s)	138
EcoRI	GAATTC	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	358
EcoT14I	CCWWGG	1 cut(s)	295
EcoT38I	GRGCYC	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	1 cut(s)	299
FaiI	YATR	1 cut(s)	297
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FatI	CATG	1 cut(s)	295
FblI	GTMKAC	1 cut(s)	32
FokI	GGATG	1 cut(s)	406
FriOI	GRGCYC	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	232
HapII	CCGG	3 cut(s)	203, 215, 239
Hin1II	CATG	1 cut(s)	299
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	3 cut(s)	18, 76, 85
HpaII	CCGG	3 cut(s)	203, 215, 239
HphI	GGTGA	2 cut(s)	173, 260
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	4 cut(s)	17, 75, 84, 148
Hpy188III	TCNNGA	2 cut(s)	10, 391
Hpy8I	GTNNAC	1 cut(s)	33
Hpy99I	CGWCG	1 cut(s)	118
HpyAV	CCTTC	4 cut(s)	113, 120, 153, 182
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4V	TGCA	1 cut(s)	281
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 203
Hsp92II	CATG	1 cut(s)	299
Kzo9I	GATC	4 cut(s)	12, 106, 153, 235
LmnI	GCTCC	1 cut(s)	320
LpnPI	CCDG	9 cut(s)	214, 216, 228, 246, 252, 253, 345, 372, 376
LweI	GCATC	2 cut(s)	274, 387
MaeIII	GTNAC	2 cut(s)	138, 259
MalI	GATC	4 cut(s)	14, 108, 155, 237
MboI	GATC	4 cut(s)	12, 106, 153, 235
MboII	GAAGA	4 cut(s)	71, 84, 163, 263
MflI	RGATCY	1 cut(s)	12
MhlI	GDGCHC	1 cut(s)	429
MluCI	AATT	4 cut(s)	5, 57, 179, 192
MnlI	CCTC	2 cut(s)	116, 167
MspI	CCGG	3 cut(s)	203, 215, 239
MspR9I	CCNGG	1 cut(s)	360
MvaI	CCWGG	1 cut(s)	360
MwoI	GCNNNNNNNGC	2 cut(s)	59, 203
NcoI	CCATGG	1 cut(s)	295
NdeII	GATC	4 cut(s)	12, 106, 153, 235
NlaIII	CATG	1 cut(s)	299
PceI	AGGCCT	1 cut(s)	232
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
PfeI	GAWTC	3 cut(s)	18, 76, 85
PfoI	TCCNGGA	1 cut(s)	358
Psp6I	CCWGG	1 cut(s)	358
PspEI	GGTNACC	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	358
PsuI	RGATCY	1 cut(s)	12
SalI	GTCGAC	1 cut(s)	31
Sau3AI	GATC	4 cut(s)	12, 106, 153, 235
ScrFI	CCNGG	1 cut(s)	360
SduI	GDGCHC	1 cut(s)	429
SetI	ASST	4 cut(s)	140, 145, 325, 370
SfaNI	GCATC	2 cut(s)	274, 387
Sse9I	AATT	4 cut(s)	5, 57, 179, 192
SseBI	AGGCCT	1 cut(s)	232
SsiI	CCGC	2 cut(s)	246, 273
StuI	AGGCCT	1 cut(s)	232
StyD4I	CCNGG	1 cut(s)	358
StyI	CCWWGG	1 cut(s)	295
TaaI	ACNGT	1 cut(s)	161
TaqI	TCGA	2 cut(s)	32, 113
TasI	AATT	4 cut(s)	5, 57, 179, 192
TfiI	GAWTC	3 cut(s)	18, 76, 85
TscAI	CASTG	1 cut(s)	227
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	131
TspRI	CASTG	1 cut(s)	227
XapI	RAATTY	2 cut(s)	5, 179
XmiI	GTMKAC	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.