Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003543

Physical Location & Seq

Genomic Coordinates Forward (+)

21263069 .. 21264375

Gene Structure 1307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G204600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGATACCCAATTCCCCAAATCCCTAATTTCCTTCTTTACCCTAATCCTCTTCGCGTTCTTCATCGTCCTCTGCTCCTTCCCCACCGTCCGATCTGAACTCCAAACCGAATCCACCATCATCCGATTGCCCTCCGAGTCCGAACCTGCCGATGCCTGTGCCGGGTCAATCCGGTCACCATCTTTATGCCCCGTCAATTGCTTCCGACCCGACCCGGTCTGCGGCGTCGACGGCGTGACATACTGGTGTGGCTGCCAAGATGCCCAATGCGCTGGGGTCAAGGTGGCGAAATTAGGGTTTTGTGAGGTGGGTAGTGGGGGCTCTGCCCCCCATTCTGCCCAAGCGCTGCTTTTGGTTCACATAGTTTGGCTGATCGTCCTCGGCTTTTCGGTATTGTTCGGCCTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

14.57

Weight (kDa)

5.13

Isoelectric Point (pI)

47.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61980 AT4G01575
fragaria_vesca	FvH4_6g41470 FvH4_7g33250
malus_domestica	MD01G1231000.v1.1 MD07G1302300.v1.1 MD09G1119600.v1.1 MD17G1110400.v1.1
prunus_persica	Prupe.2G321500_v2.0.a1 Prupe.3G204600_v2.0.a1
pyrus_communis	pycom01g23900 pycom09g04440 pycom17g10270
rosa_chinensis	RchiOBHm_Chr1g0383241 RchiOBHm_Chr2g0157141
rosa_laevigata	RLG00000020964 RLG00000026120
rosa_multiflora	Rmu_co8303603.1_g000001 Rmu_sc0006282.1_g000025 Rmu_sc0007173.1_g000025
rosa_roxburghii	Rroxscaffold_2G00092500 Rroxscaffold_4G00277480
rosa_rugosa	Rorug01G0439700 Rorug02G0457700
rosa_samantha	Rh1AG465400 Rh1BG422800 Rh1CG436000 Rh1DG455500 Rh2AG523400 Rh2BG537800 Rh2CG508100 Rh2DG546500
rosa_wichuraiana	Rw1G040700 Rw2G031080 Rw2G043280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	154
AccI	GTMKAC	1 cut(s)	228
AccII	CGCG	1 cut(s)	56
AciI	CCGC	1 cut(s)	222
AcyI	GRCGYC	1 cut(s)	225
AfeI	AGCGCT	1 cut(s)	345
AfiI	CCNNNNNNNGG	2 cut(s)	162, 221
Aor51HI	AGCGCT	1 cut(s)	345
AoxI	GGCC	1 cut(s)	400
ApeKI	GCWGC	2 cut(s)	252, 346
AspLEI	GCGC	2 cut(s)	272, 346
AsuC2I	CCSGG	2 cut(s)	163, 215
AsuHPI	GGTGA	1 cut(s)	168
BanII	GRGCYC	1 cut(s)	323
BbvI	GCAGC	2 cut(s)	239, 333
BccI	CCATC	2 cut(s)	125, 187
BceAI	ACGGC	1 cut(s)	247
BcgI	CGANNNNNNTGC	2 cut(s)	140, 174
BcnI	CCSGG	2 cut(s)	163, 215
BfoI	RGCGCY	1 cut(s)	347
BfuAI	ACCTGC	1 cut(s)	154
BisI	GCNGC	3 cut(s)	223, 253, 347
BlsI	GCNGC	3 cut(s)	224, 254, 348
Bme1390I	CCNGG	2 cut(s)	163, 215
BmrFI	CCNGG	2 cut(s)	163, 215
BmsI	GCATC	2 cut(s)	142, 250
BpuMI	CCSGG	2 cut(s)	163, 215
BsaHI	GRCGYC	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	379
BsaWI	WCCGGW	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	2 cut(s)	162, 221
Bse1I	ACTGG	1 cut(s)	248
BseDI	CCNNGG	1 cut(s)	379
BseGI	GGATG	1 cut(s)	120
BseLI	CCNNNNNNNGG	2 cut(s)	162, 221
BseNI	ACTGG	1 cut(s)	248
BseXI	GCAGC	2 cut(s)	239, 333
BseYI	CCCAGC	1 cut(s)	272
Bsh1236I	CGCG	1 cut(s)	56
BshFI	GGCC	1 cut(s)	402
BsiSI	CCGG	3 cut(s)	162, 172, 215
BslI	CCNNNNNNNGG	2 cut(s)	162, 221
BsnI	GGCC	1 cut(s)	402
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp143I	GATC	2 cut(s)	92, 372
BspACI	CCGC	1 cut(s)	222
BspANI	GGCC	1 cut(s)	402
BspFNI	CGCG	1 cut(s)	56
BspMI	ACCTGC	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	248
BssECI	CCNNGG	1 cut(s)	379
BssMI	GATC	2 cut(s)	92, 372
BssNI	GRCGYC	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	88
Bst6I	CTCTTC	1 cut(s)	56
BstACI	GRCGYC	1 cut(s)	225
BstEII	GGTNACC	1 cut(s)	174
BstF5I	GGATG	1 cut(s)	120
BstFNI	CGCG	1 cut(s)	56
BstH2I	RGCGCY	1 cut(s)	347
BstHHI	GCGC	2 cut(s)	272, 346
BstKTI	GATC	2 cut(s)	95, 375
BstMBI	GATC	2 cut(s)	92, 372
BstMWI	GCNNNNNNNGC	2 cut(s)	231, 269
BstPI	GGTNACC	1 cut(s)	174
BstSCI	CCNGG	2 cut(s)	161, 213
BstUI	CGCG	1 cut(s)	56
BstV1I	GCAGC	2 cut(s)	239, 333
BstXI	CCANNNNNNTGG	1 cut(s)	272
BsuRI	GGCC	1 cut(s)	402
BtsCI	GGATG	1 cut(s)	120
BveI	ACCTGC	1 cut(s)	154
CfoI	GCGC	2 cut(s)	272, 346
CseI	GACGC	1 cut(s)	214
CviJI	RGCY	5 cut(s)	252, 321, 370, 384, 402
CviKI_1	RGCY	5 cut(s)	252, 321, 370, 384, 402
DpnI	GATC	2 cut(s)	94, 374
DpnII	GATC	2 cut(s)	92, 372
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco24I	GRGCYC	1 cut(s)	323
Eco47III	AGCGCT	1 cut(s)	345
Eco91I	GGTNACC	1 cut(s)	174
EcoO65I	GGTNACC	1 cut(s)	174
EcoT38I	GRGCYC	1 cut(s)	323
FaiI	YATR	3 cut(s)	187, 241, 362
FalI	AAGNNNNNCTT	2 cut(s)	333, 365
FblI	GTMKAC	1 cut(s)	228
Fnu4HI	GCNGC	3 cut(s)	223, 253, 347
FokI	GGATG	1 cut(s)	107
FriOI	GRGCYC	1 cut(s)	323
Fsp4HI	GCNGC	3 cut(s)	223, 253, 347
GlaI	GCGC	2 cut(s)	271, 345
GluI	GCNGC	3 cut(s)	223, 253, 347
GsaI	CCCAGC	1 cut(s)	276
HaeII	RGCGCY	1 cut(s)	347
HaeIII	GGCC	1 cut(s)	402
HapII	CCGG	3 cut(s)	162, 172, 215
HgaI	GACGC	1 cut(s)	214
HhaI	GCGC	2 cut(s)	272, 346
Hin1I	GRCGYC	1 cut(s)	225
Hin6I	GCGC	2 cut(s)	270, 344
HinP1I	GCGC	2 cut(s)	270, 344
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	2 cut(s)	110, 137
HpaII	CCGG	3 cut(s)	162, 172, 215
HphI	GGTGA	1 cut(s)	168
Hpy166II	GTNNAC	2 cut(s)	229, 358
Hpy188I	TCNGA	7 cut(s)	92, 97, 125, 136, 142, 206, 410
Hpy8I	GTNNAC	2 cut(s)	229, 358
Hpy99I	CGWCG	2 cut(s)	230, 233
HpyAV	CCTTC	2 cut(s)	43, 88
HpyCH4III	ACNGT	1 cut(s)	88
HpyF10VI	GCNNNNNNNGC	2 cut(s)	231, 269
Hsp92I	GRCGYC	1 cut(s)	225
HspAI	GCGC	2 cut(s)	270, 344
Kzo9I	GATC	2 cut(s)	92, 372
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	7 cut(s)	159, 169, 175, 185, 228, 229, 258
Lsp1109I	GCAGC	2 cut(s)	239, 333
LweI	GCATC	2 cut(s)	142, 250
MaeIII	GTNAC	2 cut(s)	174, 235
MalI	GATC	2 cut(s)	94, 374
MboI	GATC	2 cut(s)	92, 372
MboII	GAAGA	2 cut(s)	43, 52
MfeI	CAATTG	1 cut(s)	196
MhlI	GDGCHC	1 cut(s)	323
MluCI	AATT	4 cut(s)	11, 27, 196, 290
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	1 cut(s)	229
MnlI	CCTC	5 cut(s)	59, 80, 142, 298, 389
MslI	CAYNNNNRTG	2 cut(s)	184, 244
MspI	CCGG	3 cut(s)	162, 172, 215
MspR9I	CCNGG	2 cut(s)	163, 215
MunI	CAATTG	1 cut(s)	196
MvnI	CGCG	1 cut(s)	56
MwoI	GCNNNNNNNGC	2 cut(s)	231, 269
NciI	CCSGG	2 cut(s)	163, 215
NdeII	GATC	2 cut(s)	92, 372
NmeAIII	GCCGAG	1 cut(s)	360
NmuCI	GTSAC	2 cut(s)	174, 235
PfeI	GAWTC	1 cut(s)	110
PflFI	GACNNNGTC	1 cut(s)	215
PkrI	GCNGC	3 cut(s)	224, 254, 348
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PspEI	GGTNACC	1 cut(s)	174
PspFI	CCCAGC	1 cut(s)	272
PsyI	GACNNNGTC	1 cut(s)	215
RseI	CAYNNNNRTG	2 cut(s)	184, 244
SalI	GTCGAC	1 cut(s)	227
SatI	GCNGC	3 cut(s)	223, 253, 347
Sau3AI	GATC	2 cut(s)	92, 372
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	2 cut(s)	163, 215
SduI	GDGCHC	1 cut(s)	323
SetI	ASST	3 cut(s)	148, 285, 309
SfaNI	GCATC	2 cut(s)	142, 250
SgrDI	CGTCGACG	1 cut(s)	227
SmiMI	CAYNNNNRTG	2 cut(s)	184, 244
Sse9I	AATT	4 cut(s)	11, 27, 196, 290
SsiI	CCGC	1 cut(s)	222
StyD4I	CCNGG	2 cut(s)	161, 213
TaaI	ACNGT	1 cut(s)	88
TaqI	TCGA	1 cut(s)	228
TasI	AATT	4 cut(s)	11, 27, 196, 290
TauI	GCSGC	1 cut(s)	225
TfiI	GAWTC	1 cut(s)	110
TseFI	GTSAC	2 cut(s)	174, 235
TseI	GCWGC	2 cut(s)	252, 346
Tsp45I	GTSAC	2 cut(s)	174, 235
TspDTI	ATGAA	1 cut(s)	52
Tth111I	GACNNNGTC	1 cut(s)	215
XmiI	GTMKAC	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.