Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003543

Physical Location & Seq

Genomic Coordinates Forward (+)

51059337 .. 51059717

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G031080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGATCTCAATTTCACCAAATCCCAAGCCCCTCTAGTCCTTTTCACCGTCTTCATCATCCTCTGCTCCTTCCCCACCGTCCGATCCGACCCCATCATCAAAATGCCTACCGACTCCATATCCGACGCCTGCCGCGGCTCGTCTCTGTCACGGTCCCCGGCCGTGTGCCCCGTCAATTGCTTCCGGCCCGACCCGGTCTGCGGCGTCGACGGCGTCACGTACTGGTGCGGGTGCCCGGATGCGCAGTGCGCCGGGGTCAAGGTCGCCAAGTTAGGGTTTTGCGAGGTGGGGAGTGCCGGTTCTGCCCCTCAGGCCTTGCTTTTGGTTCACATTGTCTGGCTCATCGTCCTCGGCTTTTCGGTCTTGTTCGGCCTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

13.37

Weight (kDa)

6.5

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61980 AT4G01575
fragaria_vesca	FvH4_6g41470 FvH4_7g33250
malus_domestica	MD01G1231000.v1.1 MD07G1302300.v1.1 MD09G1119600.v1.1 MD17G1110400.v1.1
prunus_persica	Prupe.2G321500_v2.0.a1 Prupe.3G204600_v2.0.a1
pyrus_communis	pycom01g23900 pycom09g04440 pycom17g10270
rosa_chinensis	RchiOBHm_Chr1g0383241 RchiOBHm_Chr2g0157141
rosa_laevigata	RLG00000020964 RLG00000026120
rosa_multiflora	Rmu_co8303603.1_g000001 Rmu_sc0006282.1_g000025 Rmu_sc0007173.1_g000025
rosa_roxburghii	Rroxscaffold_2G00092500 Rroxscaffold_4G00277480
rosa_rugosa	Rorug01G0439700 Rorug02G0457700
rosa_samantha	Rh1AG465400 Rh1BG422800 Rh1CG436000 Rh1DG455500 Rh2AG523400 Rh2BG537800 Rh2CG508100 Rh2DG546500
rosa_wichuraiana	Rw1G040700 Rw2G031080 Rw2G043280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	243
AccB1I	GGYRCC	1 cut(s)	231
AccI	GTMKAC	1 cut(s)	207
AccII	CGCG	1 cut(s)	135
AciI	CCGC	4 cut(s)	133, 135, 201, 228
AclWI	GGATC	2 cut(s)	12, 78
AcoI	YGGCCR	1 cut(s)	159
AcyI	GRCGYC	3 cut(s)	126, 204, 213
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	2 cut(s)	200, 273
AloI	GAACNNNNNNTCC	2 cut(s)	283, 315
Alw26I	GTCTC	1 cut(s)	147
AlwI	GGATC	2 cut(s)	12, 78
AoxI	GGCC	4 cut(s)	159, 185, 312, 370
AspLEI	GCGC	2 cut(s)	244, 251
AspS9I	GGNCC	2 cut(s)	153, 186
AsuC2I	CCSGG	4 cut(s)	158, 194, 236, 253
AsuHPI	GGTGA	2 cut(s)	7, 37
AvaII	GGWCC	1 cut(s)	153
AxyI	CCTNAGG	1 cut(s)	309
BaeGI	GKGCMC	2 cut(s)	170, 236
BanI	GGYRCC	1 cut(s)	231
BbsI	GAAGAC	1 cut(s)	43
BccI	CCATC	1 cut(s)	101
BceAI	ACGGC	2 cut(s)	146, 226
BcnI	CCSGG	4 cut(s)	158, 194, 236, 253
BcoDI	GTCTC	1 cut(s)	147
BfaI	CTAG	1 cut(s)	35
BglI	GCCNNNNNGGC	1 cut(s)	311
BisI	GCNGC	3 cut(s)	133, 136, 202
BlsI	GCNGC	3 cut(s)	134, 137, 203
Bme1390I	CCNGG	4 cut(s)	158, 194, 236, 253
Bme18I	GGWCC	1 cut(s)	153
BmgT120I	GGNCC	2 cut(s)	153, 186
BmiI	GGNNCC	2 cut(s)	155, 233
BmrFI	CCNGG	4 cut(s)	158, 194, 236, 253
BmsI	GCATC	1 cut(s)	229
BpiI	GAAGAC	1 cut(s)	43
BpuMI	CCSGG	4 cut(s)	158, 194, 236, 253
BsaAI	YACGTR	1 cut(s)	219
BsaHI	GRCGYC	3 cut(s)	126, 204, 213
BsaJI	CCNNGG	4 cut(s)	133, 156, 252, 349
BsaXI	ACNNNNNCTCC	2 cut(s)	283, 313
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 273
Bse118I	RCCGGY	1 cut(s)	296
Bse1I	ACTGG	1 cut(s)	227
Bse21I	CCTNAGG	1 cut(s)	309
BseDI	CCNNGG	4 cut(s)	133, 156, 252, 349
BseGI	GGATG	2 cut(s)	57, 244
BseLI	CCNNNNNNNGG	2 cut(s)	200, 273
BseMII	CTCAG	1 cut(s)	323
BseNI	ACTGG	1 cut(s)	227
BseSI	GKGCMC	2 cut(s)	170, 236
BseX3I	CGGCCG	1 cut(s)	159
Bsh1236I	CGCG	1 cut(s)	135
Bsh1285I	CGRYCG	1 cut(s)	162
BshFI	GGCC	4 cut(s)	161, 187, 314, 372
BshNI	GGYRCC	1 cut(s)	231
BsiEI	CGRYCG	1 cut(s)	162
BsiSI	CCGG	6 cut(s)	158, 184, 194, 236, 252, 297
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	2 cut(s)	200, 273
BsmAI	GTCTC	1 cut(s)	147
BsmBI	CGTCTC	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	139
BsnI	GGCC	4 cut(s)	161, 187, 314, 372
Bsp1286I	GDGCHC	2 cut(s)	170, 236
Bsp143I	GATC	2 cut(s)	4, 83
BspACI	CCGC	4 cut(s)	133, 135, 201, 228
BspANI	GGCC	4 cut(s)	161, 187, 314, 372
BspCNI	CTCAG	1 cut(s)	322
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	2 cut(s)	155, 233
BspPI	GGATC	2 cut(s)	12, 78
BspT107I	GGYRCC	1 cut(s)	231
BsrFI	RCCGGY	1 cut(s)	296
BsrI	ACTGG	1 cut(s)	227
BssAI	RCCGGY	1 cut(s)	296
BssECI	CCNNGG	4 cut(s)	133, 156, 252, 349
BssMI	GATC	2 cut(s)	4, 83
BssNI	GRCGYC	3 cut(s)	126, 204, 213
Bst4CI	ACNGT	3 cut(s)	49, 79, 153
BstACI	GRCGYC	3 cut(s)	126, 204, 213
BstBAI	YACGTR	1 cut(s)	219
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	1 cut(s)	309
BstDSI	CCRYGG	1 cut(s)	133
BstF5I	GGATG	2 cut(s)	57, 244
BstFNI	CGCG	1 cut(s)	135
BstHHI	GCGC	2 cut(s)	244, 251
BstKTI	GATC	2 cut(s)	7, 86
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	2 cut(s)	4, 83
BstMCI	CGRYCG	1 cut(s)	162
BstMWI	GCNNNNNNNGC	4 cut(s)	210, 248, 302, 311
BstSCI	CCNGG	4 cut(s)	156, 192, 234, 251
BstSLI	GKGCMC	2 cut(s)	170, 236
BstUI	CGCG	1 cut(s)	135
BstV2I	GAAGAC	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BstZI	CGGCCG	1 cut(s)	159
Bsu36I	CCTNAGG	1 cut(s)	309
BsuRI	GGCC	4 cut(s)	161, 187, 314, 372
BtgI	CCRYGG	1 cut(s)	133
BtsCI	GGATG	2 cut(s)	57, 244
BtsI	GCAGTG	1 cut(s)	251
BtsIMutI	CAGTG	1 cut(s)	251
Cac8I	GCNNGC	1 cut(s)	130
CfoI	GCGC	2 cut(s)	244, 251
Cfr10I	RCCGGY	1 cut(s)	296
Cfr13I	GGNCC	2 cut(s)	153, 186
Cfr42I	CCGCGG	1 cut(s)	136
CseI	GACGC	3 cut(s)	134, 193, 202
Csp6I	GTAC	1 cut(s)	220
CviJI	RGCY	8 cut(s)	29, 138, 161, 187, 314, 340, 354, 372
CviKI_1	RGCY	8 cut(s)	29, 138, 161, 187, 314, 340, 354, 372
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	2 cut(s)	6, 85
DpnII	GATC	2 cut(s)	4, 83
EaeI	YGGCCR	1 cut(s)	159
EagI	CGGCCG	1 cut(s)	159
EclXI	CGGCCG	1 cut(s)	159
Eco147I	AGGCCT	1 cut(s)	314
Eco47I	GGWCC	1 cut(s)	153
Eco52I	CGGCCG	1 cut(s)	159
Eco81I	CCTNAGG	1 cut(s)	309
Esp3I	CGTCTC	1 cut(s)	147
FaiI	YATR	1 cut(s)	119
FaqI	GGGAC	1 cut(s)	139
FauI	CCCGC	1 cut(s)	221
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	3 cut(s)	133, 136, 202
FokI	GGATG	2 cut(s)	44, 251
Fsp4HI	GCNGC	3 cut(s)	133, 136, 202
FspBI	CTAG	1 cut(s)	35
FspI	TGCGCA	1 cut(s)	243
GlaI	GCGC	2 cut(s)	243, 250
GluI	GCNGC	3 cut(s)	133, 136, 202
HaeIII	GGCC	4 cut(s)	161, 187, 314, 372
HapII	CCGG	6 cut(s)	158, 184, 194, 236, 252, 297
HgaI	GACGC	3 cut(s)	134, 193, 202
HhaI	GCGC	2 cut(s)	244, 251
Hin1I	GRCGYC	3 cut(s)	126, 204, 213
Hin6I	GCGC	2 cut(s)	242, 249
HinP1I	GCGC	2 cut(s)	242, 249
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	1 cut(s)	113
HpaII	CCGG	6 cut(s)	158, 184, 194, 236, 252, 297
HphI	GGTGA	2 cut(s)	7, 37
Hpy166II	GTNNAC	2 cut(s)	208, 328
Hpy188I	TCNGA	4 cut(s)	83, 88, 124, 380
Hpy8I	GTNNAC	2 cut(s)	208, 328
Hpy99I	CGWCG	3 cut(s)	128, 209, 212
HpyAV	CCTTC	1 cut(s)	79
HpyCH4III	ACNGT	3 cut(s)	49, 79, 153
HpyCH4IV	ACGT	1 cut(s)	218
HpyF10VI	GCNNNNNNNGC	4 cut(s)	210, 248, 302, 311
HpyF3I	CTNAG	1 cut(s)	309
HpySE526I	ACGT	1 cut(s)	218
Hsp92I	GRCGYC	3 cut(s)	126, 204, 213
HspAI	GCGC	2 cut(s)	242, 249
KspI	CCGCGG	1 cut(s)	136
Kzo9I	GATC	2 cut(s)	4, 83
LmnI	GCTCC	1 cut(s)	71
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	1 cut(s)	218
MaeIII	GTNAC	2 cut(s)	147, 214
MalI	GATC	2 cut(s)	6, 85
MboI	GATC	2 cut(s)	4, 83
MboII	GAAGA	1 cut(s)	43
MfeI	CAATTG	1 cut(s)	175
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	2 cut(s)	170, 236
MluCI	AATT	2 cut(s)	10, 175
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	2 cut(s)	111, 147
MnlI	CCTC	5 cut(s)	42, 71, 277, 318, 359
MslI	CAYNNNNRTG	1 cut(s)	101
MspA1I	CMGCKG	1 cut(s)	135
MspI	CCGG	6 cut(s)	158, 184, 194, 236, 252, 297
MspR9I	CCNGG	4 cut(s)	158, 194, 236, 253
MunI	CAATTG	1 cut(s)	175
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	4 cut(s)	210, 248, 302, 311
NciI	CCSGG	4 cut(s)	158, 194, 236, 253
NdeII	GATC	2 cut(s)	4, 83
NlaIV	GGNNCC	2 cut(s)	155, 233
NmeAIII	GCCGAG	1 cut(s)	330
NmuCI	GTSAC	2 cut(s)	147, 214
NsbI	TGCGCA	1 cut(s)	243
PceI	AGGCCT	1 cut(s)	314
PflFI	GACNNNGTC	2 cut(s)	194, 212
PkrI	GCNGC	3 cut(s)	134, 137, 203
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
Ppu21I	YACGTR	1 cut(s)	219
PspN4I	GGNNCC	2 cut(s)	155, 233
PspPI	GGNCC	2 cut(s)	153, 186
PsuI	RGATCY	1 cut(s)	4
PsyI	GACNNNGTC	2 cut(s)	194, 212
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	101
SacII	CCGCGG	1 cut(s)	136
SalI	GTCGAC	1 cut(s)	206
SatI	GCNGC	3 cut(s)	133, 136, 202
Sau3AI	GATC	2 cut(s)	4, 83
Sau96I	GGNCC	2 cut(s)	153, 186
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	4 cut(s)	158, 194, 236, 253
SduI	GDGCHC	2 cut(s)	170, 236
SetI	ASST	3 cut(s)	221, 264, 288
SfaNI	GCATC	1 cut(s)	229
Sfr303I	CCGCGG	1 cut(s)	136
SgrBI	CCGCGG	1 cut(s)	136
SgrDI	CGTCGACG	1 cut(s)	206
SinI	GGWCC	1 cut(s)	153
SmiMI	CAYNNNNRTG	1 cut(s)	101
Sse9I	AATT	2 cut(s)	10, 175
SseBI	AGGCCT	1 cut(s)	314
SsiI	CCGC	4 cut(s)	133, 135, 201, 228
SspMI	CTAG	1 cut(s)	35
StuI	AGGCCT	1 cut(s)	314
StyD4I	CCNGG	4 cut(s)	156, 192, 234, 251
TaaI	ACNGT	3 cut(s)	49, 79, 153
TaiI	ACGT	1 cut(s)	221
TaqI	TCGA	1 cut(s)	207
TaqII	GACCGA	1 cut(s)	349
TasI	AATT	2 cut(s)	10, 175
TauI	GCSGC	3 cut(s)	135, 138, 204
TscAI	CASTG	1 cut(s)	251
TseFI	GTSAC	2 cut(s)	147, 214
Tsp45I	GTSAC	2 cut(s)	147, 214
TspDTI	ATGAA	1 cut(s)	43
TspRI	CASTG	1 cut(s)	251
Tth111I	GACNNNGTC	2 cut(s)	194, 212
VpaK11BI	GGWCC	1 cut(s)	153
XmiI	GTMKAC	1 cut(s)	207
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.