Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003543

Physical Location & Seq

Genomic Coordinates Forward (+)

23690142 .. 23691175

Gene Structure 1034 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g33250.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGAGCACACCCACTTCCTTAAATCCCCAATCTCTCTCATTTTACCGATACTCTTCACCGCCTTCATCCTCGGTTGCTTCCCCACCGTCCGATCCGAGCAGGAACCTAGTTTCATCAAGCTCCCTTCAGAGTCTCAACCAGCTGATGTATGTCCTGTTGTGGTTAAGTCACCCGTTCACGCCCTGTCGTGTCCGGTCAATTGCTTTCGACCGGACCCGGTTTGCGGCGTGAACGGTGTGACGTATTGGTGTGGCTGCCAGGAAGCCCAATGTGCCGGGGTTAAAGTGGCCAAGTTGGGTTTTTGTGAGGTTGGAAATGGGGGTGCAGCCCCTCTCTCAGCGCAGGCCTTGCTTTTGGTTCACATTGTGTGGCTCATCGTCCTCGGGTTTTCGGTTTTGTTCGGACTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

14.64

Weight (kDa)

6.38

Isoelectric Point (pI)

48.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61980 AT4G01575
fragaria_vesca	FvH4_6g41470 FvH4_7g33250
malus_domestica	MD01G1231000.v1.1 MD07G1302300.v1.1 MD09G1119600.v1.1 MD17G1110400.v1.1
prunus_persica	Prupe.2G321500_v2.0.a1 Prupe.3G204600_v2.0.a1
pyrus_communis	pycom01g23900 pycom09g04440 pycom17g10270
rosa_chinensis	RchiOBHm_Chr1g0383241 RchiOBHm_Chr2g0157141
rosa_laevigata	RLG00000020964 RLG00000026120
rosa_multiflora	Rmu_co8303603.1_g000001 Rmu_sc0006282.1_g000025 Rmu_sc0007173.1_g000025
rosa_roxburghii	Rroxscaffold_2G00092500 Rroxscaffold_4G00277480
rosa_rugosa	Rorug01G0439700 Rorug02G0457700
rosa_samantha	Rh1AG465400 Rh1BG422800 Rh1CG436000 Rh1DG455500 Rh2AG523400 Rh2BG537800 Rh2CG508100 Rh2DG546500
rosa_wichuraiana	Rw1G040700 Rw2G031080 Rw2G043280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	60, 225
AclWI	GGATC	1 cut(s)	87
AcoI	YGGCCR	1 cut(s)	288
AcuI	CTGAAG	1 cut(s)	111
AdeI	CACNNNGTG	1 cut(s)	367
AfiI	CCNNNNNNNGG	1 cut(s)	224
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	2 cut(s)	121, 143
AluI	AGCT	2 cut(s)	121, 143
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	1 cut(s)	138
AlwI	GGATC	1 cut(s)	87
Ama87I	CYCGRG	1 cut(s)	383
AoxI	GGCC	2 cut(s)	288, 345
ApeKI	GCWGC	2 cut(s)	255, 326
AspLEI	GCGC	1 cut(s)	343
AspS9I	GGNCC	1 cut(s)	214
AsuC2I	CCSGG	2 cut(s)	218, 277
AsuHPI	GGTGA	2 cut(s)	49, 162
AvaI	CYCGRG	1 cut(s)	383
AvaII	GGWCC	1 cut(s)	214
BalI	TGGCCA	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	2 cut(s)	242, 338
BciT130I	CCWGG	1 cut(s)	260
BcnI	CCSGG	2 cut(s)	218, 277
BcoDI	GTCTC	1 cut(s)	138
BfaI	CTAG	1 cut(s)	108
BisI	GCNGC	3 cut(s)	226, 256, 327
BlsI	GCNGC	3 cut(s)	227, 257, 328
Bme1390I	CCNGG	3 cut(s)	218, 260, 277
Bme18I	GGWCC	1 cut(s)	214
BmeT110I	CYCGRG	1 cut(s)	383
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	2 cut(s)	105, 216
BmrFI	CCNGG	3 cut(s)	218, 260, 277
BpuMI	CCSGG	2 cut(s)	218, 277
BsaJI	CCNNGG	3 cut(s)	70, 276, 382
BsaWI	WCCGGW	2 cut(s)	193, 211
Bsc4I	CCNNNNNNNGG	1 cut(s)	224
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	3 cut(s)	70, 276, 382
BseGI	GGATG	1 cut(s)	66
BseLI	CCNNNNNNNGG	1 cut(s)	224
BseMII	CTCAG	1 cut(s)	351
BseXI	GCAGC	2 cut(s)	242, 338
BsgI	GTGCAG	1 cut(s)	345
Bsh1285I	CGRYCG	1 cut(s)	212
BshFI	GGCC	2 cut(s)	290, 347
BsiEI	CGRYCG	1 cut(s)	212
BsiHKAI	GWGCWC	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	383
BsiSI	CCGG	4 cut(s)	194, 212, 218, 276
BslI	CCNNNNNNNGG	1 cut(s)	224
BsmAI	GTCTC	1 cut(s)	138
BsnI	GGCC	2 cut(s)	290, 347
BsoBI	CYCGRG	1 cut(s)	383
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	1 cut(s)	92
BspACI	CCGC	2 cut(s)	60, 225
BspANI	GGCC	2 cut(s)	290, 347
BspCNI	CTCAG	1 cut(s)	350
BspLI	GGNNCC	2 cut(s)	105, 216
BspPI	GGATC	1 cut(s)	87
BssECI	CCNNGG	3 cut(s)	70, 276, 382
BssMI	GATC	1 cut(s)	92
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	2 cut(s)	88, 236
Bst6I	CTCTTC	1 cut(s)	59
BstAPI	GCANNNNNTGC	1 cut(s)	349
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	1 cut(s)	337
BstF5I	GGATG	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	343
BstKTI	GATC	1 cut(s)	95
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	1 cut(s)	92
BstMCI	CGRYCG	1 cut(s)	212
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 349
BstNI	CCWGG	1 cut(s)	260
BstSCI	CCNGG	3 cut(s)	216, 258, 275
BstV1I	GCAGC	2 cut(s)	242, 338
BsuRI	GGCC	2 cut(s)	290, 347
BtsCI	GGATG	1 cut(s)	66
Cac8I	GCNNGC	1 cut(s)	345
CfoI	GCGC	1 cut(s)	343
Cfr13I	GGNCC	1 cut(s)	214
CviJI	RGCY	8 cut(s)	121, 143, 255, 266, 290, 329, 347, 373
CviKI_1	RGCY	8 cut(s)	121, 143, 255, 266, 290, 329, 347, 373
DdeI	CTNAG	1 cut(s)	337
DpnI	GATC	1 cut(s)	94
DpnII	GATC	1 cut(s)	92
DraIII	CACNNNGTG	1 cut(s)	367
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
Eco147I	AGGCCT	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	111
Eco88I	CYCGRG	1 cut(s)	383
EcoRII	CCWGG	1 cut(s)	258
FaiI	YATR	1 cut(s)	151
Fnu4HI	GCNGC	3 cut(s)	226, 256, 327
FokI	GGATG	1 cut(s)	53
Fsp4HI	GCNGC	3 cut(s)	226, 256, 327
FspBI	CTAG	1 cut(s)	108
GlaI	GCGC	1 cut(s)	342
GluI	GCNGC	3 cut(s)	226, 256, 327
HaeIII	GGCC	2 cut(s)	290, 347
HapII	CCGG	4 cut(s)	194, 212, 218, 276
HhaI	GCGC	1 cut(s)	343
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HinfI	GANTC	1 cut(s)	131
HpaII	CCGG	4 cut(s)	194, 212, 218, 276
HphI	GGTGA	2 cut(s)	49, 162
Hpy166II	GTNNAC	3 cut(s)	178, 232, 361
Hpy188I	TCNGA	4 cut(s)	92, 97, 130, 404
Hpy8I	GTNNAC	3 cut(s)	178, 232, 361
HpyAV	CCTTC	2 cut(s)	73, 135
HpyCH4III	ACNGT	2 cut(s)	88, 236
HpyCH4IV	ACGT	1 cut(s)	242
HpyCH4V	TGCA	1 cut(s)	326
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 349
HpyF3I	CTNAG	1 cut(s)	337
HpySE526I	ACGT	1 cut(s)	242
HspAI	GCGC	1 cut(s)	341
Kzo9I	GATC	1 cut(s)	92
LmnI	GCTCC	2 cut(s)	4, 126
Lsp1109I	GCAGC	2 cut(s)	242, 338
MaeI	CTAG	1 cut(s)	108
MaeII	ACGT	1 cut(s)	242
MaeIII	GTNAC	2 cut(s)	168, 238
MalI	GATC	1 cut(s)	94
MboI	GATC	1 cut(s)	92
MboII	GAAGA	1 cut(s)	46
MfeI	CAATTG	1 cut(s)	199
MhlI	GDGCHC	1 cut(s)	9
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	1 cut(s)	199
MluNI	TGGCCA	1 cut(s)	290
MlyI	GAGTC	1 cut(s)	140
MmeI	TCCRAC	1 cut(s)	292
MnlI	CCTC	4 cut(s)	80, 301, 342, 392
Mox20I	TGGCCA	1 cut(s)	290
MscI	TGGCCA	1 cut(s)	290
MseI	TTAA	4 cut(s)	21, 165, 282, 412
Msp20I	TGGCCA	1 cut(s)	290
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	4 cut(s)	194, 212, 218, 276
MspR9I	CCNGG	3 cut(s)	218, 260, 277
MunI	CAATTG	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	260
MwoI	GCNNNNNNNGC	2 cut(s)	272, 349
NciI	CCSGG	2 cut(s)	218, 277
NdeII	GATC	1 cut(s)	92
NlaIV	GGNNCC	2 cut(s)	105, 216
NmuCI	GTSAC	2 cut(s)	168, 238
PceI	AGGCCT	1 cut(s)	347
PkrI	GCNGC	3 cut(s)	227, 257, 328
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	2 cut(s)	105, 216
PspPI	GGNCC	1 cut(s)	214
PvuII	CAGCTG	1 cut(s)	143
SaqAI	TTAA	4 cut(s)	21, 165, 282, 412
SatI	GCNGC	3 cut(s)	226, 256, 327
Sau3AI	GATC	1 cut(s)	92
Sau96I	GGNCC	1 cut(s)	214
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	3 cut(s)	218, 260, 277
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	5 cut(s)	109, 123, 145, 245, 312
SinI	GGWCC	1 cut(s)	214
Sse9I	AATT	1 cut(s)	199
SseBI	AGGCCT	1 cut(s)	347
SsiI	CCGC	2 cut(s)	60, 225
SspMI	CTAG	1 cut(s)	108
StuI	AGGCCT	1 cut(s)	347
StyD4I	CCNGG	3 cut(s)	216, 258, 275
TaaI	ACNGT	2 cut(s)	88, 236
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	1 cut(s)	208
TasI	AATT	1 cut(s)	199
TauI	GCSGC	1 cut(s)	228
Tru1I	TTAA	4 cut(s)	21, 165, 282, 412
Tru9I	TTAA	4 cut(s)	21, 165, 282, 412
TseFI	GTSAC	2 cut(s)	168, 238
TseI	GCWGC	2 cut(s)	255, 326
Tsp45I	GTSAC	2 cut(s)	168, 238
TspDTI	ATGAA	2 cut(s)	55, 103
VpaK11BI	GGWCC	1 cut(s)	214
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.