Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003543

Physical Location & Seq

Genomic Coordinates Forward (+)

21051165 .. 21051590

Gene Structure 426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g23900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGATGCCCATTTCGCGAAATCGGTACCAGTCCCCCTCATCCTCCTAAGCCTCTTCCCAATCTTTGTCTTCTGTTCCTTTTCCACAGTTCAATCCGACCACGAATCATCAACGATCATTAATCTCCGATTGCCCTCAGATGCCACGTCTGCGGATCGATGCAGCGCACTACTGGAGTCACCCTTGTCCCGCCCCATGTGTCCGGTAAACTGCTTTAGACCTGACCCGGTGTGTGGGGTGGACGGGGTGACCTACTGGTGTGGGTGCCAAGAGGCACAGTGTGCCGGTGTCAAAGTGGCAAAATTAGGGTTTTGTGAAGTTGGCAGTGGGGGTTCTGCAGGCCCTCTCTCCGCTCAGGCGCTGCTTTTGGTTCACATTGTTTGGCTGATCGTCCTCGGCTTCTCGGTTCTTTTCGGGCTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

14.97

Weight (kDa)

5.41

Isoelectric Point (pI)

35.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61980 AT4G01575
fragaria_vesca	FvH4_6g41470 FvH4_7g33250
malus_domestica	MD01G1231000.v1.1 MD07G1302300.v1.1 MD09G1119600.v1.1 MD17G1110400.v1.1
prunus_persica	Prupe.2G321500_v2.0.a1 Prupe.3G204600_v2.0.a1
pyrus_communis	pycom01g23900 pycom09g04440 pycom17g10270
rosa_chinensis	RchiOBHm_Chr1g0383241 RchiOBHm_Chr2g0157141
rosa_laevigata	RLG00000020964 RLG00000026120
rosa_multiflora	Rmu_co8303603.1_g000001 Rmu_sc0006282.1_g000025 Rmu_sc0007173.1_g000025
rosa_roxburghii	Rroxscaffold_2G00092500 Rroxscaffold_4G00277480
rosa_rugosa	Rorug01G0439700 Rorug02G0457700
rosa_samantha	Rh1AG465400 Rh1BG422800 Rh1CG436000 Rh1DG455500 Rh2AG523400 Rh2BG537800 Rh2CG508100 Rh2DG546500
rosa_wichuraiana	Rw1G040700 Rw2G031080 Rw2G043280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	25
AccB1I	GGYRCC	2 cut(s)	25, 264
AccBSI	CCGCTC	1 cut(s)	353
AccII	CGCG	1 cut(s)	17
AciI	CCGC	3 cut(s)	152, 190, 351
AclWI	GGATC	1 cut(s)	162
AdeI	CACNNNGTG	1 cut(s)	281
AfaI	GTAC	1 cut(s)	27
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgsI	TTSAA	1 cut(s)	92
AjiI	CACGTC	1 cut(s)	147
AlwI	GGATC	1 cut(s)	162
AlwNI	CAGNNNCTG	1 cut(s)	361
AoxI	GGCC	1 cut(s)	340
ApeKI	GCWGC	2 cut(s)	162, 361
AseI	ATTAAT	1 cut(s)	120
Asp718I	GGTACC	1 cut(s)	25
AspLEI	GCGC	2 cut(s)	167, 361
AspS9I	GGNCC	1 cut(s)	341
AsuC2I	CCSGG	1 cut(s)	227
AsuHPI	GGTGA	2 cut(s)	171, 259
BanI	GGYRCC	2 cut(s)	25, 264
BbsI	GAAGAC	1 cut(s)	61
BbvI	GCAGC	2 cut(s)	174, 348
BcnI	CCSGG	1 cut(s)	227
BfmI	CTRYAG	1 cut(s)	336
BfoI	RGCGCY	1 cut(s)	362
BisI	GCNGC	2 cut(s)	163, 362
BlsI	GCNGC	2 cut(s)	164, 363
Bme1390I	CCNGG	1 cut(s)	227
BmgBI	CACGTC	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	341
BmiI	GGNNCC	2 cut(s)	27, 266
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	2 cut(s)	130, 149
BpiI	GAAGAC	1 cut(s)	61
BpmI	CTGGAG	1 cut(s)	194
Bpu10I	CCTNAGC	2 cut(s)	47, 354
BpuMI	CCSGG	1 cut(s)	227
Bsa29I	ATCGAT	1 cut(s)	157
BsaJI	CCNNGG	1 cut(s)	394
BsaWI	WCCGGW	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse118I	RCCGGY	1 cut(s)	284
Bse1I	ACTGG	3 cut(s)	29, 177, 260
BseCI	ATCGAT	1 cut(s)	157
BseDI	CCNNGG	1 cut(s)	394
BseGI	GGATG	2 cut(s)	10, 39
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMII	CTCAG	2 cut(s)	150, 368
BseNI	ACTGG	3 cut(s)	29, 177, 260
BseXI	GCAGC	2 cut(s)	174, 348
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	1 cut(s)	342
BshNI	GGYRCC	2 cut(s)	25, 264
BshVI	ATCGAT	1 cut(s)	157
BsiSI	CCGG	3 cut(s)	203, 227, 285
BslFI	GGGAC	2 cut(s)	17, 172
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmFI	GGGAC	2 cut(s)	17, 172
BsnI	GGCC	1 cut(s)	342
Bsp143I	GATC	3 cut(s)	114, 154, 387
Bsp68I	TCGCGA	1 cut(s)	17
BspACI	CCGC	3 cut(s)	152, 190, 351
BspANI	GGCC	1 cut(s)	342
BspCNI	CTCAG	2 cut(s)	149, 367
BspDI	ATCGAT	1 cut(s)	157
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	2 cut(s)	27, 266
BspMAI	CTGCAG	1 cut(s)	340
BspPI	GGATC	1 cut(s)	162
BspT107I	GGYRCC	2 cut(s)	25, 264
BsrBI	CCGCTC	1 cut(s)	353
BsrFI	RCCGGY	1 cut(s)	284
BsrI	ACTGG	3 cut(s)	29, 177, 260
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	1 cut(s)	394
BssMI	GATC	3 cut(s)	114, 154, 387
Bst4CI	ACNGT	2 cut(s)	88, 279
Bst6I	CTCTTC	1 cut(s)	59
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstC8I	GCNNGC	1 cut(s)	340
BstDEI	CTNAG	3 cut(s)	47, 136, 354
BstEII	GGTNACC	1 cut(s)	247
BstF5I	GGATG	2 cut(s)	10, 39
BstFNI	CGCG	1 cut(s)	17
BstH2I	RGCGCY	1 cut(s)	362
BstHHI	GCGC	2 cut(s)	167, 361
BstKTI	GATC	3 cut(s)	117, 157, 390
BstMBI	GATC	3 cut(s)	114, 154, 387
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 149, 281
BstPI	GGTNACC	1 cut(s)	247
BstSCI	CCNGG	1 cut(s)	225
BstSFI	CTRYAG	1 cut(s)	336
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	2 cut(s)	174, 348
BstV2I	GAAGAC	1 cut(s)	61
Bsu15I	ATCGAT	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	342
BsuTUI	ATCGAT	1 cut(s)	157
BtrI	CACGTC	1 cut(s)	147
BtsCI	GGATG	2 cut(s)	10, 39
BtsI	GCAGTG	1 cut(s)	331
BtsIMutI	CAGTG	2 cut(s)	284, 331
BtuMI	TCGCGA	1 cut(s)	17
Cac8I	GCNNGC	1 cut(s)	340
CaiI	CAGNNNCTG	1 cut(s)	361
CfoI	GCGC	2 cut(s)	167, 361
Cfr10I	RCCGGY	1 cut(s)	284
Cfr13I	GGNCC	1 cut(s)	341
ClaI	ATCGAT	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	26
CviAII	CATG	1 cut(s)	196
CviJI	RGCY	5 cut(s)	51, 342, 385, 399, 418
CviKI_1	RGCY	5 cut(s)	51, 342, 385, 399, 418
CviQI	GTAC	1 cut(s)	26
DdeI	CTNAG	3 cut(s)	47, 136, 354
DpnI	GATC	3 cut(s)	116, 156, 389
DpnII	GATC	3 cut(s)	114, 154, 387
DraIII	CACNNNGTG	1 cut(s)	281
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
Eco91I	GGTNACC	1 cut(s)	247
EcoO109I	RGGNCCY	1 cut(s)	341
EcoO65I	GGTNACC	1 cut(s)	247
FaeI	CATG	1 cut(s)	199
FaiI	YATR	1 cut(s)	197
FaqI	GGGAC	2 cut(s)	17, 172
FatI	CATG	1 cut(s)	195
FauI	CCCGC	1 cut(s)	197
Fnu4HI	GCNGC	2 cut(s)	163, 362
FokI	GGATG	2 cut(s)	17, 26
Fsp4HI	GCNGC	2 cut(s)	163, 362
GlaI	GCGC	2 cut(s)	166, 360
GluI	GCNGC	2 cut(s)	163, 362
GsuI	CTGGAG	1 cut(s)	194
HaeII	RGCGCY	1 cut(s)	362
HaeIII	GGCC	1 cut(s)	342
HapII	CCGG	3 cut(s)	203, 227, 285
HhaI	GCGC	2 cut(s)	167, 361
Hin1II	CATG	1 cut(s)	199
Hin6I	GCGC	2 cut(s)	165, 359
HinP1I	GCGC	2 cut(s)	165, 359
HinfI	GANTC	2 cut(s)	104, 176
HpaII	CCGG	3 cut(s)	203, 227, 285
HphI	GGTGA	2 cut(s)	171, 259
Hpy166II	GTNNAC	3 cut(s)	208, 241, 373
Hpy188I	TCNGA	4 cut(s)	97, 128, 139, 425
Hpy188III	TCNNGA	1 cut(s)	16
Hpy8I	GTNNAC	3 cut(s)	208, 241, 373
HpyCH4III	ACNGT	2 cut(s)	88, 279
HpyCH4IV	ACGT	1 cut(s)	146
HpyCH4V	TGCA	2 cut(s)	162, 338
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 149, 281
HpyF3I	CTNAG	3 cut(s)	47, 136, 354
HpySE526I	ACGT	1 cut(s)	146
Hsp92II	CATG	1 cut(s)	199
HspAI	GCGC	2 cut(s)	165, 359
KpnI	GGTACC	1 cut(s)	29
Kzo9I	GATC	3 cut(s)	114, 154, 387
LpnPI	CCDG	9 cut(s)	42, 158, 216, 234, 240, 241, 298, 324, 341
Lsp1109I	GCAGC	2 cut(s)	174, 348
LweI	GCATC	2 cut(s)	130, 149
MaeII	ACGT	1 cut(s)	146
MaeIII	GTNAC	2 cut(s)	177, 247
MalI	GATC	3 cut(s)	116, 156, 389
MbiI	CCGCTC	1 cut(s)	353
MboI	GATC	3 cut(s)	114, 154, 387
MboII	GAAGA	2 cut(s)	46, 61
MluCI	AATT	1 cut(s)	302
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	7 cut(s)	47, 53, 62, 145, 265, 354, 404
MseI	TTAA	1 cut(s)	120
MspI	CCGG	3 cut(s)	203, 227, 285
MspR9I	CCNGG	1 cut(s)	227
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	3 cut(s)	14, 149, 281
NciI	CCSGG	1 cut(s)	227
NdeII	GATC	3 cut(s)	114, 154, 387
NlaIII	CATG	1 cut(s)	199
NlaIV	GGNNCC	2 cut(s)	27, 266
NmeAIII	GCCGAG	1 cut(s)	375
NmuCI	GTSAC	2 cut(s)	177, 247
NruI	TCGCGA	1 cut(s)	17
PfeI	GAWTC	1 cut(s)	104
PkrI	GCNGC	2 cut(s)	164, 363
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
PshBI	ATTAAT	1 cut(s)	120
PspEI	GGTNACC	1 cut(s)	247
PspN4I	GGNNCC	2 cut(s)	27, 266
PspPI	GGNCC	1 cut(s)	341
PstI	CTGCAG	1 cut(s)	340
PstNI	CAGNNNCTG	1 cut(s)	361
RruI	TCGCGA	1 cut(s)	17
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	2 cut(s)	163, 362
Sau3AI	GATC	3 cut(s)	114, 154, 387
Sau96I	GGNCC	1 cut(s)	341
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	227
SetI	ASST	3 cut(s)	149, 223, 254
SfaNI	GCATC	2 cut(s)	130, 149
SfcI	CTRYAG	1 cut(s)	336
Sse9I	AATT	1 cut(s)	302
SsiI	CCGC	3 cut(s)	152, 190, 351
StyD4I	CCNGG	1 cut(s)	225
TaaI	ACNGT	2 cut(s)	88, 279
TaiI	ACGT	1 cut(s)	149
TaqI	TCGA	1 cut(s)	157
TasI	AATT	1 cut(s)	302
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TscAI	CASTG	2 cut(s)	284, 331
TseFI	GTSAC	2 cut(s)	177, 247
TseI	GCWGC	2 cut(s)	162, 361
Tsp45I	GTSAC	2 cut(s)	177, 247
TspRI	CASTG	2 cut(s)	284, 331
VspI	ATTAAT	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.