Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003543

Physical Location & Seq

Genomic Coordinates Forward (+)

29883923 .. 29885685

Gene Structure 1763 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G321500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGAGCCCCAGTTCGCAAAATCACCAATCCCTCTCATCCTCCTAATCCTCTTCCCCATCTTCATCCTCTGTTCCTTCCCCACCGTACGATCCGAGCATGAATCTACCATCATCCGACTGCCCTCGGATTCCCAATCAGCCGATCGATGTGGCTCGACTCCGTCGTCTCCCTTGTCTTCGTCGTCGTCACCCTGGTCCCGCCCCATGTGCCCCGTCAATTGCTTTCGACCCGACCCGGTTTGCGGCGTGGACGGTGTGACCTACTGGTGTGGGTGCCAGGAGGCTCAATGTGCTGGGGTGAAAGTGGCCAAGCTAGGGTTTTGTGAGGTGGGTAATGGGGGTTCTGCCCCTCTCTCCGCTCAAGCCCTGCTTTTGGTTCACATTGTGTGGCTGATCGTCCTCGGCTTCTCGGTTTTGTTCGGACTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

15.3

Weight (kDa)

6.03

Isoelectric Point (pI)

54.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61980 AT4G01575
fragaria_vesca	FvH4_6g41470 FvH4_7g33250
malus_domestica	MD01G1231000.v1.1 MD07G1302300.v1.1 MD09G1119600.v1.1 MD17G1110400.v1.1
prunus_persica	Prupe.2G321500_v2.0.a1 Prupe.3G204600_v2.0.a1
pyrus_communis	pycom01g23900 pycom09g04440 pycom17g10270
rosa_chinensis	RchiOBHm_Chr1g0383241 RchiOBHm_Chr2g0157141
rosa_laevigata	RLG00000020964 RLG00000026120
rosa_multiflora	Rmu_co8303603.1_g000001 Rmu_sc0006282.1_g000025 Rmu_sc0007173.1_g000025
rosa_roxburghii	Rroxscaffold_2G00092500 Rroxscaffold_4G00277480
rosa_rugosa	Rorug01G0439700 Rorug02G0457700
rosa_samantha	Rh1AG465400 Rh1BG422800 Rh1CG436000 Rh1DG455500 Rh2AG523400 Rh2BG537800 Rh2CG508100 Rh2DG546500
rosa_wichuraiana	Rw1G040700 Rw2G031080 Rw2G043280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	163
AccB1I	GGYRCC	1 cut(s)	273
AccBSI	CCGCTC	1 cut(s)	359
AciI	CCGC	3 cut(s)	199, 243, 357
AclWI	GGATC	1 cut(s)	84
AcoI	YGGCCR	1 cut(s)	306
AdeI	CACNNNGTG	1 cut(s)	385
AfaI	GTAC	1 cut(s)	87
AfiI	CCNNNNNNNGG	3 cut(s)	242, 315, 373
AjnI	CCWGG	2 cut(s)	191, 276
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	1 cut(s)	313
AluI	AGCT	1 cut(s)	313
Alw26I	GTCTC	1 cut(s)	171
AlwI	GGATC	1 cut(s)	84
AoxI	GGCC	1 cut(s)	306
AspS9I	GGNCC	1 cut(s)	195
AsuC2I	CCSGG	1 cut(s)	236
AsuHPI	GGTGA	3 cut(s)	15, 180, 310
AvaII	GGWCC	1 cut(s)	195
BaeGI	GKGCMC	1 cut(s)	212
BalI	TGGCCA	1 cut(s)	308
BanI	GGYRCC	1 cut(s)	273
BanII	GRGCYC	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	168
BccI	CCATC	2 cut(s)	65, 116
BciT130I	CCWGG	2 cut(s)	193, 278
BcnI	CCSGG	1 cut(s)	236
BcoDI	GTCTC	1 cut(s)	171
BfaI	CTAG	1 cut(s)	314
BisI	GCNGC	1 cut(s)	244
BlsI	GCNGC	1 cut(s)	245
Bme1390I	CCNGG	3 cut(s)	193, 236, 278
Bme18I	GGWCC	1 cut(s)	195
BmgT120I	GGNCC	1 cut(s)	195
BmiI	GGNNCC	3 cut(s)	6, 197, 275
BmrFI	CCNGG	3 cut(s)	193, 236, 278
BmrI	ACTGGG	1 cut(s)	4
BmuI	ACTGGG	1 cut(s)	4
BpiI	GAAGAC	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	345
BpuMI	CCSGG	1 cut(s)	236
Bsa29I	ATCGAT	1 cut(s)	145
BsaJI	CCNNGG	3 cut(s)	123, 191, 400
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	3 cut(s)	242, 315, 373
Bse1I	ACTGG	2 cut(s)	10, 269
BseBI	CCWGG	2 cut(s)	193, 278
BseCI	ATCGAT	1 cut(s)	145
BseDI	CCNNGG	3 cut(s)	123, 191, 400
BseGI	GGATG	3 cut(s)	36, 63, 111
BseLI	CCNNNNNNNGG	3 cut(s)	242, 315, 373
BseNI	ACTGG	2 cut(s)	10, 269
BseSI	GKGCMC	1 cut(s)	212
BseYI	CCCAGC	1 cut(s)	293
Bsh1285I	CGRYCG	1 cut(s)	145
BshFI	GGCC	1 cut(s)	308
BshNI	GGYRCC	1 cut(s)	273
BshVI	ATCGAT	1 cut(s)	145
BsiEI	CGRYCG	1 cut(s)	145
BsiSI	CCGG	1 cut(s)	236
BsiWI	CGTACG	1 cut(s)	85
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	3 cut(s)	242, 315, 373
BsmAI	GTCTC	1 cut(s)	171
BsmBI	CGTCTC	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	181
BsnI	GGCC	1 cut(s)	308
Bsp1286I	GDGCHC	2 cut(s)	9, 212
Bsp143I	GATC	3 cut(s)	89, 142, 393
BspACI	CCGC	3 cut(s)	199, 243, 357
BspANI	GGCC	1 cut(s)	308
BspDI	ATCGAT	1 cut(s)	145
BspLI	GGNNCC	3 cut(s)	6, 197, 275
BspPI	GGATC	1 cut(s)	84
BspT107I	GGYRCC	1 cut(s)	273
BsrBI	CCGCTC	1 cut(s)	359
BsrI	ACTGG	2 cut(s)	10, 269
BssECI	CCNNGG	3 cut(s)	123, 191, 400
BssMI	GATC	3 cut(s)	89, 142, 393
Bst2UI	CCWGG	2 cut(s)	193, 278
Bst4CI	ACNGT	2 cut(s)	85, 254
Bst6I	CTCTTC	1 cut(s)	56
BstF5I	GGATG	3 cut(s)	36, 63, 111
BstKTI	GATC	3 cut(s)	92, 145, 396
BstMAI	GTCTC	1 cut(s)	171
BstMBI	GATC	3 cut(s)	89, 142, 393
BstMCI	CGRYCG	1 cut(s)	145
BstMWI	GCNNNNNNNGC	2 cut(s)	207, 290
BstNI	CCWGG	2 cut(s)	193, 278
BstSCI	CCNGG	3 cut(s)	191, 234, 276
BstSLI	GKGCMC	1 cut(s)	212
BstV2I	GAAGAC	1 cut(s)	168
Bsu15I	ATCGAT	1 cut(s)	145
BsuRI	GGCC	1 cut(s)	308
BsuTUI	ATCGAT	1 cut(s)	145
BtsCI	GGATG	3 cut(s)	36, 63, 111
Cfr13I	GGNCC	1 cut(s)	195
ClaI	ATCGAT	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	86
CviAII	CATG	2 cut(s)	98, 205
CviJI	RGCY	9 cut(s)	7, 140, 153, 284, 308, 313, 365, 391, 405
CviKI_1	RGCY	9 cut(s)	7, 140, 153, 284, 308, 313, 365, 391, 405
CviQI	GTAC	1 cut(s)	86
DpnI	GATC	3 cut(s)	91, 144, 395
DpnII	GATC	3 cut(s)	89, 142, 393
DraIII	CACNNNGTG	1 cut(s)	385
DrdI	GACNNNNNNGTC	1 cut(s)	163
DseDI	GACNNNNNNGTC	1 cut(s)	163
EaeI	YGGCCR	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco24I	GRGCYC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	195
EcoRII	CCWGG	2 cut(s)	191, 276
EcoT38I	GRGCYC	1 cut(s)	9
Esp3I	CGTCTC	1 cut(s)	171
FaeI	CATG	2 cut(s)	101, 208
FaiI	YATR	2 cut(s)	99, 206
FalI	AAGNNNNNCTT	2 cut(s)	354, 386
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	2 cut(s)	97, 204
FauI	CCCGC	1 cut(s)	206
Fnu4HI	GCNGC	1 cut(s)	244
FokI	GGATG	3 cut(s)	23, 50, 98
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	1 cut(s)	244
FspBI	CTAG	1 cut(s)	314
GluI	GCNGC	1 cut(s)	244
GsaI	CCCAGC	1 cut(s)	297
HaeIII	GGCC	1 cut(s)	308
HapII	CCGG	1 cut(s)	236
Hin1II	CATG	2 cut(s)	101, 208
HinfI	GANTC	3 cut(s)	101, 128, 157
HpaII	CCGG	1 cut(s)	236
HphI	GGTGA	3 cut(s)	15, 180, 310
Hpy166II	GTNNAC	2 cut(s)	250, 379
Hpy188I	TCNGA	5 cut(s)	94, 116, 127, 422, 431
Hpy8I	GTNNAC	2 cut(s)	250, 379
Hpy99I	CGWCG	3 cut(s)	166, 184, 187
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	2 cut(s)	85, 254
HpyF10VI	GCNNNNNNNGC	2 cut(s)	207, 290
Hsp92II	CATG	2 cut(s)	101, 208
Kzo9I	GATC	3 cut(s)	89, 142, 393
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	9 cut(s)	23, 178, 205, 249, 250, 263, 279, 290, 380
MaeI	CTAG	1 cut(s)	314
MaeIII	GTNAC	2 cut(s)	186, 256
MalI	GATC	3 cut(s)	91, 144, 395
MbiI	CCGCTC	1 cut(s)	359
MboI	GATC	3 cut(s)	89, 142, 393
MboII	GAAGA	3 cut(s)	43, 52, 168
MfeI	CAATTG	1 cut(s)	217
MhlI	GDGCHC	2 cut(s)	9, 212
MlsI	TGGCCA	1 cut(s)	308
MluCI	AATT	1 cut(s)	217
MluNI	TGGCCA	1 cut(s)	308
MlyI	GAGTC	1 cut(s)	151
MmeI	TCCRAC	1 cut(s)	139
MnlI	CCTC	9 cut(s)	42, 50, 59, 77, 133, 274, 319, 360, 410
Mox20I	TGGCCA	1 cut(s)	308
MscI	TGGCCA	1 cut(s)	308
Msp20I	TGGCCA	1 cut(s)	308
MspI	CCGG	1 cut(s)	236
MspR9I	CCNGG	3 cut(s)	193, 236, 278
MunI	CAATTG	1 cut(s)	217
MvaI	CCWGG	2 cut(s)	193, 278
MwoI	GCNNNNNNNGC	2 cut(s)	207, 290
NciI	CCSGG	1 cut(s)	236
NdeII	GATC	3 cut(s)	89, 142, 393
NlaIII	CATG	2 cut(s)	101, 208
NlaIV	GGNNCC	3 cut(s)	6, 197, 275
NmeAIII	GCCGAG	1 cut(s)	381
NmuCI	GTSAC	2 cut(s)	186, 256
PcsI	WCGNNNNNNNCGW	1 cut(s)	161
PfeI	GAWTC	2 cut(s)	101, 128
Pfl23II	CGTACG	1 cut(s)	85
PflFI	GACNNNGTC	1 cut(s)	160
PkrI	GCNGC	1 cut(s)	245
Ple19I	CGATCG	1 cut(s)	145
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
Psp6I	CCWGG	2 cut(s)	191, 276
PspFI	CCCAGC	1 cut(s)	293
PspGI	CCWGG	2 cut(s)	191, 276
PspLI	CGTACG	1 cut(s)	85
PspN4I	GGNNCC	3 cut(s)	6, 197, 275
PspPI	GGNCC	1 cut(s)	195
PsrI	GAACNNNNNNTAC	2 cut(s)	325, 357
PsyI	GACNNNGTC	1 cut(s)	160
PvuI	CGATCG	1 cut(s)	145
RsaI	GTAC	1 cut(s)	87
RsaNI	GTAC	1 cut(s)	86
SatI	GCNGC	1 cut(s)	244
Sau3AI	GATC	3 cut(s)	89, 142, 393
Sau96I	GGNCC	1 cut(s)	195
SchI	GAGTC	1 cut(s)	151
ScrFI	CCNGG	3 cut(s)	193, 236, 278
SduI	GDGCHC	2 cut(s)	9, 212
SetI	ASST	3 cut(s)	263, 315, 330
SinI	GGWCC	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	360
SmoI	CTYRAG	1 cut(s)	360
Sse9I	AATT	1 cut(s)	217
SsiI	CCGC	3 cut(s)	199, 243, 357
SspMI	CTAG	1 cut(s)	314
StyD4I	CCNGG	3 cut(s)	191, 234, 276
TaaI	ACNGT	2 cut(s)	85, 254
TaqI	TCGA	3 cut(s)	145, 155, 226
TasI	AATT	1 cut(s)	217
TauI	GCSGC	1 cut(s)	246
TfiI	GAWTC	2 cut(s)	101, 128
TseFI	GTSAC	2 cut(s)	186, 256
Tsp45I	GTSAC	2 cut(s)	186, 256
TspDTI	ATGAA	2 cut(s)	52, 114
TspGWI	ACGGA	1 cut(s)	150
Tth111I	GACNNNGTC	1 cut(s)	160
VpaK11BI	GGWCC	1 cut(s)	195
XspI	CTAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.