Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003543

Physical Location & Seq

Genomic Coordinates Reverse (-)

874001 .. 874411

Gene Structure 411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00277480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGAGCTCCACTTCCTTAAGTCCCCAATCTCTCTCATTATACCTATACTCTTCACCGCCTTCATCCTCGGTTGCTTCCCCACCGTCCGATCCGAGCAGGAAGATAGTTTCATCAAATTGCCCTCGGAGTCTCAACCAGCTGATGTATGTCCCGTCCAGACTACGTCACCCGTTCACGCCCTCACATGTCCGGTCAATTGCTTTCGACCGGACCCAGTATGCGGCGTGAACGGTGTAACATACTGGTGTGGATGCCAGGAGGCACAATGTGCCGGGGTTAAAGTGGCCAAGTTGGGATTTTGCGAGGTGGGAAATGGGGGTGCGGCTCCTCTATCTGCACAGGCCTTGCTTTTGGTTCACATTGTGTGGCTTATCGTTCTCGGATTCTCGGTTTTGTTTGGACTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

14.55

Weight (kDa)

5.43

Isoelectric Point (pI)

45.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61980 AT4G01575
fragaria_vesca	FvH4_6g41470 FvH4_7g33250
malus_domestica	MD01G1231000.v1.1 MD07G1302300.v1.1 MD09G1119600.v1.1 MD17G1110400.v1.1
prunus_persica	Prupe.2G321500_v2.0.a1 Prupe.3G204600_v2.0.a1
pyrus_communis	pycom01g23900 pycom09g04440 pycom17g10270
rosa_chinensis	RchiOBHm_Chr1g0383241 RchiOBHm_Chr2g0157141
rosa_laevigata	RLG00000020964 RLG00000026120
rosa_multiflora	Rmu_co8303603.1_g000001 Rmu_sc0006282.1_g000025 Rmu_sc0007173.1_g000025
rosa_roxburghii	Rroxscaffold_2G00092500 Rroxscaffold_4G00277480
rosa_rugosa	Rorug01G0439700 Rorug02G0457700
rosa_samantha	Rh1AG465400 Rh1BG422800 Rh1CG436000 Rh1DG455500 Rh2AG523400 Rh2BG537800 Rh2CG508100 Rh2DG546500
rosa_wichuraiana	Rw1G040700 Rw2G031080 Rw2G043280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	57, 222, 323
AclWI	GGATC	1 cut(s)	84
AcoI	YGGCCR	1 cut(s)	285
AdeI	CACNNNGTG	2 cut(s)	269, 364
AfiI	CCNNNNNNNGG	1 cut(s)	221
AflII	CTTAAG	1 cut(s)	17
AflIII	ACRYGT	1 cut(s)	185
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	2 cut(s)	7, 140
AluI	AGCT	2 cut(s)	7, 140
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	1 cut(s)	135
AlwI	GGATC	1 cut(s)	84
AoxI	GGCC	2 cut(s)	285, 342
AspS9I	GGNCC	1 cut(s)	211
AsuC2I	CCSGG	1 cut(s)	274
AsuHPI	GGTGA	2 cut(s)	46, 159
AvaII	GGWCC	1 cut(s)	211
BalI	TGGCCA	1 cut(s)	287
BanII	GRGCYC	1 cut(s)	9
Bbv12I	GWGCWC	1 cut(s)	9
BciT130I	CCWGG	1 cut(s)	257
BcnI	CCSGG	1 cut(s)	274
BcoDI	GTCTC	1 cut(s)	135
BfrI	CTTAAG	1 cut(s)	17
BisI	GCNGC	2 cut(s)	223, 324
BlsI	GCNGC	2 cut(s)	224, 325
Bme1390I	CCNGG	2 cut(s)	257, 274
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	2 cut(s)	213, 327
BmrFI	CCNGG	2 cut(s)	257, 274
BmrI	ACTGGG	1 cut(s)	209
BmsI	GCATC	1 cut(s)	242
BmuI	ACTGGG	1 cut(s)	209
BpuMI	CCSGG	1 cut(s)	274
BsaJI	CCNNGG	3 cut(s)	67, 123, 273
BsaWI	WCCGGW	2 cut(s)	190, 208
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse1I	ACTGG	2 cut(s)	215, 248
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	3 cut(s)	67, 123, 273
BseGI	GGATG	2 cut(s)	63, 257
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseNI	ACTGG	2 cut(s)	215, 248
BseRI	GAGGAG	1 cut(s)	318
BsgI	GTGCAG	1 cut(s)	321
Bsh1285I	CGRYCG	1 cut(s)	209
BshFI	GGCC	2 cut(s)	287, 344
BsiEI	CGRYCG	1 cut(s)	209
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	3 cut(s)	191, 209, 273
BslFI	GGGAC	2 cut(s)	7, 135
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmAI	GTCTC	1 cut(s)	135
BsmFI	GGGAC	2 cut(s)	7, 135
BsnI	GGCC	2 cut(s)	287, 344
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	1 cut(s)	89
BspACI	CCGC	3 cut(s)	57, 222, 323
BspANI	GGCC	2 cut(s)	287, 344
BspLI	GGNNCC	2 cut(s)	213, 327
BspPI	GGATC	1 cut(s)	84
BspTI	CTTAAG	1 cut(s)	17
BsrI	ACTGG	2 cut(s)	215, 248
BssECI	CCNNGG	3 cut(s)	67, 123, 273
BssMI	GATC	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	2 cut(s)	85, 233
Bst6I	CTCTTC	1 cut(s)	56
BstAFI	CTTAAG	1 cut(s)	17
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstF5I	GGATG	2 cut(s)	63, 257
BstKTI	GATC	1 cut(s)	92
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	1 cut(s)	89
BstMCI	CGRYCG	1 cut(s)	209
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNI	CCWGG	1 cut(s)	257
BstNSI	RCATGY	1 cut(s)	189
BstSCI	CCNGG	2 cut(s)	255, 272
BsuRI	GGCC	2 cut(s)	287, 344
BtsCI	GGATG	2 cut(s)	63, 257
Cfr13I	GGNCC	1 cut(s)	211
CviAII	CATG	1 cut(s)	186
CviJI	RGCY	6 cut(s)	7, 140, 287, 326, 344, 370
CviKI_1	RGCY	6 cut(s)	7, 140, 287, 326, 344, 370
DpnI	GATC	1 cut(s)	91
DpnII	GATC	1 cut(s)	89
DraIII	CACNNNGTG	2 cut(s)	269, 364
EaeI	YGGCCR	1 cut(s)	285
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Ecl136II	GAGCTC	1 cut(s)	7
Eco147I	AGGCCT	1 cut(s)	344
Eco24I	GRGCYC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	211
Eco53kI	GAGCTC	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	255
EcoT38I	GRGCYC	1 cut(s)	9
FaeI	CATG	1 cut(s)	189
FaiI	YATR	6 cut(s)	41, 47, 148, 187, 220, 241
FaqI	GGGAC	2 cut(s)	7, 135
FatI	CATG	1 cut(s)	185
Fnu4HI	GCNGC	2 cut(s)	223, 324
FokI	GGATG	2 cut(s)	50, 264
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	2 cut(s)	223, 324
GluI	GCNGC	2 cut(s)	223, 324
HaeIII	GGCC	2 cut(s)	287, 344
HapII	CCGG	3 cut(s)	191, 209, 273
Hin1II	CATG	1 cut(s)	189
HinfI	GANTC	2 cut(s)	128, 384
HpaII	CCGG	3 cut(s)	191, 209, 273
HphI	GGTGA	2 cut(s)	46, 159
Hpy166II	GTNNAC	3 cut(s)	175, 229, 358
Hpy188I	TCNGA	4 cut(s)	89, 94, 127, 383
Hpy188III	TCNNGA	1 cut(s)	157
Hpy8I	GTNNAC	3 cut(s)	175, 229, 358
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	2 cut(s)	85, 233
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	1 cut(s)	338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpySE526I	ACGT	1 cut(s)	164
Hsp92II	CATG	1 cut(s)	189
Kzo9I	GATC	1 cut(s)	89
LmnI	GCTCC	3 cut(s)	4, 12, 331
LweI	GCATC	1 cut(s)	242
MaeII	ACGT	1 cut(s)	164
MaeIII	GTNAC	2 cut(s)	165, 235
MalI	GATC	1 cut(s)	91
MboI	GATC	1 cut(s)	89
MboII	GAAGA	2 cut(s)	43, 113
MfeI	CAATTG	1 cut(s)	196
MhlI	GDGCHC	1 cut(s)	9
MlsI	TGGCCA	1 cut(s)	287
MluCI	AATT	2 cut(s)	116, 196
MluNI	TGGCCA	1 cut(s)	287
MlyI	GAGTC	1 cut(s)	137
MnlI	CCTC	6 cut(s)	77, 133, 191, 253, 298, 339
Mox20I	TGGCCA	1 cut(s)	287
MscI	TGGCCA	1 cut(s)	287
MseI	TTAA	2 cut(s)	18, 279
MslI	CAYNNNNRTG	1 cut(s)	244
Msp20I	TGGCCA	1 cut(s)	287
MspA1I	CMGCKG	1 cut(s)	140
MspCI	CTTAAG	1 cut(s)	17
MspI	CCGG	3 cut(s)	191, 209, 273
MspR9I	CCNGG	2 cut(s)	257, 274
MunI	CAATTG	1 cut(s)	196
MvaI	CCWGG	1 cut(s)	257
MwoI	GCNNNNNNNGC	1 cut(s)	269
NciI	CCSGG	1 cut(s)	274
NdeII	GATC	1 cut(s)	89
NlaIII	CATG	1 cut(s)	189
NlaIV	GGNNCC	2 cut(s)	213, 327
NmuCI	GTSAC	1 cut(s)	165
NspI	RCATGY	1 cut(s)	189
PceI	AGGCCT	1 cut(s)	344
PciI	ACATGT	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	384
PflFI	GACNNNGTC	1 cut(s)	163
PkrI	GCNGC	2 cut(s)	224, 325
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PscI	ACATGT	1 cut(s)	185
Psp124BI	GAGCTC	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	2 cut(s)	213, 327
PspPI	GGNCC	1 cut(s)	211
PsyI	GACNNNGTC	1 cut(s)	163
PvuII	CAGCTG	1 cut(s)	140
RseI	CAYNNNNRTG	1 cut(s)	244
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	2 cut(s)	18, 279
SatI	GCNGC	2 cut(s)	223, 324
Sau3AI	GATC	1 cut(s)	89
Sau96I	GGNCC	1 cut(s)	211
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	2 cut(s)	257, 274
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	5 cut(s)	9, 46, 142, 167, 309
SfaNI	GCATC	1 cut(s)	242
SinI	GGWCC	1 cut(s)	211
SmiMI	CAYNNNNRTG	1 cut(s)	244
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
Sse9I	AATT	2 cut(s)	116, 196
SseBI	AGGCCT	1 cut(s)	344
SsiI	CCGC	3 cut(s)	57, 222, 323
SstI	GAGCTC	1 cut(s)	9
StuI	AGGCCT	1 cut(s)	344
StyD4I	CCNGG	2 cut(s)	255, 272
TaaI	ACNGT	2 cut(s)	85, 233
TaiI	ACGT	1 cut(s)	167
TaqI	TCGA	1 cut(s)	205
TasI	AATT	2 cut(s)	116, 196
TauI	GCSGC	2 cut(s)	225, 326
TfiI	GAWTC	1 cut(s)	384
Tru1I	TTAA	2 cut(s)	18, 279
Tru9I	TTAA	2 cut(s)	18, 279
TseFI	GTSAC	1 cut(s)	165
Tsp45I	GTSAC	1 cut(s)	165
TspDTI	ATGAA	2 cut(s)	52, 100
Tth111I	GACNNNGTC	1 cut(s)	163
Vha464I	CTTAAG	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	211
XceI	RCATGY	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.