Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003543

Physical Location & Seq

Genomic Coordinates Forward (+)

32589984 .. 32591663

Gene Structure 1680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g41470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGATTGGATTCACTTCAACCATGGATCTCAAATCCCCCAAATCCCATCTACTCCTCTTCACCGTCTTCATCATCACCATCCTCTGCTCCTTCTCCGCCGTCCGATCTGACCCCATCATCAAATTGCCCTCCGACTCCGACTCCGACTCCGGCGCCTGCGGCGGCTCCTCTCTGTCTCGCTCCCCGGTCGTCTGCCCCGTCAATTGCTTCCGCCCCGACCCGGTCTGCGGCGTCGACGGCGTCACCTACTGGTGCGGCTGCCCCGACGCCCAGTGCGCCGGCGTCAAGGTCGCCAAGCTAGGGTTTTGCGAGGTCGGGAATGGCGGTTCTGCCCCTCAGGCCCTGCTCTTGGTTCACATTGTCTGGCTCATCGTCCTCGGCATTTCGGTCCTTTTCGGACTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

14.11

Weight (kDa)

6.0

Isoelectric Point (pI)

42.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61980 AT4G01575
fragaria_vesca	FvH4_6g41470 FvH4_7g33250
malus_domestica	MD01G1231000.v1.1 MD07G1302300.v1.1 MD09G1119600.v1.1 MD17G1110400.v1.1
prunus_persica	Prupe.2G321500_v2.0.a1 Prupe.3G204600_v2.0.a1
pyrus_communis	pycom01g23900 pycom09g04440 pycom17g10270
rosa_chinensis	RchiOBHm_Chr1g0383241 RchiOBHm_Chr2g0157141
rosa_laevigata	RLG00000020964 RLG00000026120
rosa_multiflora	Rmu_co8303603.1_g000001 Rmu_sc0006282.1_g000025 Rmu_sc0007173.1_g000025
rosa_roxburghii	Rroxscaffold_2G00092500 Rroxscaffold_4G00277480
rosa_rugosa	Rorug01G0439700 Rorug02G0457700
rosa_samantha	Rh1AG465400 Rh1BG422800 Rh1CG436000 Rh1DG455500 Rh2AG523400 Rh2BG537800 Rh2CG508100 Rh2DG546500
rosa_wichuraiana	Rw1G040700 Rw2G031080 Rw2G043280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	152
AccI	GTMKAC	1 cut(s)	234
AciI	CCGC	7 cut(s)	96, 159, 162, 211, 228, 255, 324
AclWI	GGATC	1 cut(s)	33
AcyI	GRCGYC	5 cut(s)	153, 231, 240, 267, 282
AfiI	CCNNNNNNNGG	4 cut(s)	220, 227, 300, 349
AgsI	TTSAA	1 cut(s)	18
AloI	GAACNNNNNNTCC	2 cut(s)	310, 342
AluBI	AGCT	1 cut(s)	298
AluI	AGCT	1 cut(s)	298
Alw26I	GTCTC	1 cut(s)	180
AlwI	GGATC	1 cut(s)	33
AlwNI	CAGNNNCTG	1 cut(s)	343
AoxI	GGCC	1 cut(s)	339
ApeKI	GCWGC	1 cut(s)	258
AspLEI	GCGC	2 cut(s)	155, 278
AspS9I	GGNCC	2 cut(s)	340, 388
AsuC2I	CCSGG	2 cut(s)	185, 221
AsuHPI	GGTGA	3 cut(s)	52, 67, 235
AvaII	GGWCC	1 cut(s)	388
AxyI	CCTNAGG	1 cut(s)	336
BanI	GGYRCC	1 cut(s)	152
BbsI	GAAGAC	1 cut(s)	58
BbvI	GCAGC	1 cut(s)	245
BccI	CCATC	3 cut(s)	54, 86, 122
BceAI	ACGGC	2 cut(s)	83, 253
BcnI	CCSGG	2 cut(s)	185, 221
BcoDI	GTCTC	1 cut(s)	180
BfaI	CTAG	1 cut(s)	299
BfoI	RGCGCY	1 cut(s)	156
BglI	GCCNNNNNGGC	1 cut(s)	338
BisI	GCNGC	5 cut(s)	160, 163, 229, 256, 259
BlsI	GCNGC	5 cut(s)	161, 164, 230, 257, 260
Bme1390I	CCNGG	2 cut(s)	185, 221
Bme18I	GGWCC	1 cut(s)	388
BmgT120I	GGNCC	2 cut(s)	340, 388
BmiI	GGNNCC	2 cut(s)	154, 166
BmrFI	CCNGG	2 cut(s)	185, 221
BmrI	ACTGGG	1 cut(s)	265
BmuI	ACTGGG	1 cut(s)	265
BpiI	GAAGAC	1 cut(s)	58
BpuMI	CCSGG	2 cut(s)	185, 221
BsaHI	GRCGYC	5 cut(s)	153, 231, 240, 267, 282
BsaJI	CCNNGG	3 cut(s)	21, 183, 376
BsaXI	ACNNNNNCTCC	4 cut(s)	125, 131, 155, 161
Bsc4I	CCNNNNNNNGG	4 cut(s)	220, 227, 300, 349
Bse118I	RCCGGY	1 cut(s)	278
Bse1I	ACTGG	2 cut(s)	254, 271
Bse21I	CCTNAGG	1 cut(s)	336
BseDI	CCNNGG	3 cut(s)	21, 183, 376
BseGI	GGATG	1 cut(s)	78
BseLI	CCNNNNNNNGG	4 cut(s)	220, 227, 300, 349
BseMII	CTCAG	1 cut(s)	350
BseNI	ACTGG	2 cut(s)	254, 271
BseRI	GAGGAG	2 cut(s)	44, 157
BseXI	GCAGC	1 cut(s)	245
Bsh1285I	CGRYCG	1 cut(s)	189
BshFI	GGCC	1 cut(s)	341
BshNI	GGYRCC	1 cut(s)	152
BsiEI	CGRYCG	1 cut(s)	189
BsiSI	CCGG	4 cut(s)	150, 185, 221, 279
BslI	CCNNNNNNNGG	4 cut(s)	220, 227, 300, 349
BsmAI	GTCTC	1 cut(s)	180
BsnI	GGCC	1 cut(s)	341
Bsp143I	GATC	2 cut(s)	25, 104
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	7 cut(s)	96, 159, 162, 211, 228, 255, 324
BspANI	GGCC	1 cut(s)	341
BspCNI	CTCAG	1 cut(s)	349
BspLI	GGNNCC	2 cut(s)	154, 166
BspPI	GGATC	1 cut(s)	33
BspT107I	GGYRCC	1 cut(s)	152
BsrFI	RCCGGY	1 cut(s)	278
BsrI	ACTGG	2 cut(s)	254, 271
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	3 cut(s)	21, 183, 376
BssMI	GATC	2 cut(s)	25, 104
BssNI	GRCGYC	5 cut(s)	153, 231, 240, 267, 282
BssT1I	CCWWGG	1 cut(s)	21
Bst4CI	ACNGT	1 cut(s)	64
Bst6I	CTCTTC	1 cut(s)	62
BstACI	GRCGYC	5 cut(s)	153, 231, 240, 267, 282
BstC8I	GCNNGC	2 cut(s)	157, 280
BstDEI	CTNAG	1 cut(s)	336
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	1 cut(s)	78
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	2 cut(s)	155, 278
BstKTI	GATC	2 cut(s)	28, 107
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	2 cut(s)	25, 104
BstMCI	CGRYCG	1 cut(s)	189
BstMWI	GCNNNNNNNGC	4 cut(s)	159, 237, 275, 338
BstSCI	CCNGG	2 cut(s)	183, 219
BstV1I	GCAGC	1 cut(s)	245
BstV2I	GAAGAC	1 cut(s)	58
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
Bsu36I	CCTNAGG	1 cut(s)	336
BsuRI	GGCC	1 cut(s)	341
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	278
Cac8I	GCNNGC	2 cut(s)	157, 280
CaiI	CAGNNNCTG	1 cut(s)	343
CfoI	GCGC	2 cut(s)	155, 278
Cfr10I	RCCGGY	1 cut(s)	278
Cfr13I	GGNCC	2 cut(s)	340, 388
CseI	GACGC	4 cut(s)	220, 229, 271, 275
CviAII	CATG	1 cut(s)	22
CviJI	RGCY	5 cut(s)	165, 258, 298, 341, 367
CviKI_1	RGCY	5 cut(s)	165, 258, 298, 341, 367
DdeI	CTNAG	1 cut(s)	336
DinI	GGCGCC	1 cut(s)	154
DpnI	GATC	2 cut(s)	27, 106
DpnII	GATC	2 cut(s)	25, 104
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
EciI	GGCGGA	2 cut(s)	85, 200
Eco130I	CCWWGG	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	388
Eco81I	CCTNAGG	1 cut(s)	336
EcoO109I	RGGNCCY	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	21
EgeI	GGCGCC	1 cut(s)	154
EheI	GGCGCC	1 cut(s)	154
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	1 cut(s)	25
FaiI	YATR	1 cut(s)	23
FatI	CATG	1 cut(s)	21
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	5 cut(s)	160, 163, 229, 256, 259
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	5 cut(s)	160, 163, 229, 256, 259
FspBI	CTAG	1 cut(s)	299
GlaI	GCGC	2 cut(s)	154, 277
GluI	GCNGC	5 cut(s)	160, 163, 229, 256, 259
HaeII	RGCGCY	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	341
HapII	CCGG	4 cut(s)	150, 185, 221, 279
HgaI	GACGC	4 cut(s)	220, 229, 271, 275
HhaI	GCGC	2 cut(s)	155, 278
Hin1I	GRCGYC	5 cut(s)	153, 231, 240, 267, 282
Hin1II	CATG	1 cut(s)	25
Hin6I	GCGC	2 cut(s)	153, 276
HinP1I	GCGC	2 cut(s)	153, 276
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	4 cut(s)	9, 134, 140, 146
HpaII	CCGG	4 cut(s)	150, 185, 221, 279
HphI	GGTGA	3 cut(s)	52, 67, 235
Hpy166II	GTNNAC	2 cut(s)	235, 355
Hpy188I	TCNGA	7 cut(s)	104, 109, 133, 139, 145, 398, 407
Hpy188III	TCNNGA	1 cut(s)	316
Hpy8I	GTNNAC	2 cut(s)	235, 355
Hpy99I	CGWCG	3 cut(s)	236, 239, 269
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	1 cut(s)	64
HpyF10VI	GCNNNNNNNGC	4 cut(s)	159, 237, 275, 338
HpyF3I	CTNAG	1 cut(s)	336
Hsp92I	GRCGYC	5 cut(s)	153, 231, 240, 267, 282
Hsp92II	CATG	1 cut(s)	25
HspAI	GCGC	2 cut(s)	153, 276
KasI	GGCGCC	1 cut(s)	152
KroI	GCCGGC	1 cut(s)	278
KroNI	GCCGGC	1 cut(s)	280
Kzo9I	GATC	2 cut(s)	25, 104
LmnI	GCTCC	3 cut(s)	92, 170, 185
Lsp1109I	GCAGC	1 cut(s)	245
MaeI	CTAG	1 cut(s)	299
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	2 cut(s)	27, 106
MboI	GATC	2 cut(s)	25, 104
MboII	GAAGA	2 cut(s)	49, 58
MfeI	CAATTG	1 cut(s)	202
MflI	RGATCY	1 cut(s)	25
MluCI	AATT	2 cut(s)	122, 202
Mly113I	GGCGCC	1 cut(s)	153
MlyI	GAGTC	3 cut(s)	128, 134, 140
MmeI	TCCRAC	3 cut(s)	156, 162, 168
MnlI	CCTC	7 cut(s)	65, 92, 139, 178, 304, 345, 386
MreI	CGCCGGCG	1 cut(s)	278
MroNI	GCCGGC	1 cut(s)	278
MspI	CCGG	4 cut(s)	150, 185, 221, 279
MspR9I	CCNGG	2 cut(s)	185, 221
MunI	CAATTG	1 cut(s)	202
MwoI	GCNNNNNNNGC	4 cut(s)	159, 237, 275, 338
NaeI	GCCGGC	1 cut(s)	280
NarI	GGCGCC	1 cut(s)	153
NciI	CCSGG	2 cut(s)	185, 221
NcoI	CCATGG	1 cut(s)	21
NdeII	GATC	2 cut(s)	25, 104
NgoMIV	GCCGGC	1 cut(s)	278
NlaIII	CATG	1 cut(s)	25
NlaIV	GGNNCC	2 cut(s)	154, 166
NmeAIII	GCCGAG	1 cut(s)	357
NmuCI	GTSAC	1 cut(s)	241
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PdiI	GCCGGC	1 cut(s)	280
PfeI	GAWTC	1 cut(s)	9
PflFI	GACNNNGTC	2 cut(s)	221, 239
PkrI	GCNGC	5 cut(s)	161, 164, 230, 257, 260
PleI	GAGTC	3 cut(s)	128, 134, 140
PluTI	GGCGCC	1 cut(s)	156
PpsI	GAGTC	3 cut(s)	128, 134, 140
PspN4I	GGNNCC	2 cut(s)	154, 166
PspPI	GGNCC	2 cut(s)	340, 388
PstNI	CAGNNNCTG	1 cut(s)	343
PsuI	RGATCY	1 cut(s)	25
PsyI	GACNNNGTC	2 cut(s)	221, 239
SalI	GTCGAC	1 cut(s)	233
SatI	GCNGC	5 cut(s)	160, 163, 229, 256, 259
Sau3AI	GATC	2 cut(s)	25, 104
Sau96I	GGNCC	2 cut(s)	340, 388
SchI	GAGTC	3 cut(s)	128, 134, 140
ScrFI	CCNGG	2 cut(s)	185, 221
SetI	ASST	4 cut(s)	248, 291, 300, 315
SfoI	GGCGCC	1 cut(s)	154
SgrAI	CRCCGGYG	1 cut(s)	278
SgrDI	CGTCGACG	1 cut(s)	233
SinI	GGWCC	1 cut(s)	388
Sse9I	AATT	2 cut(s)	122, 202
SsiI	CCGC	7 cut(s)	96, 159, 162, 211, 228, 255, 324
SspDI	GGCGCC	1 cut(s)	152
SspMI	CTAG	1 cut(s)	299
StyD4I	CCNGG	2 cut(s)	183, 219
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	1 cut(s)	64
TaqI	TCGA	1 cut(s)	234
TaqII	GACCGA	1 cut(s)	376
TasI	AATT	2 cut(s)	122, 202
TauI	GCSGC	4 cut(s)	162, 165, 231, 258
TfiI	GAWTC	1 cut(s)	9
TscAI	CASTG	1 cut(s)	278
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	1 cut(s)	258
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	1 cut(s)	58
TspRI	CASTG	1 cut(s)	278
Tth111I	GACNNNGTC	2 cut(s)	221, 239
VpaK11BI	GGWCC	1 cut(s)	388
XmiI	GTMKAC	1 cut(s)	234
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.