Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003543

Physical Location & Seq

Genomic Coordinates Reverse (-)

9503239 .. 9503655

Gene Structure 417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1110400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGATACCCAATTCCCCAAATCCCTAATTTCAATTTCTTCCCTTGTTCTTTTCGCCTTCTTCATCGTCCTCTGCTCCTTCCCAGCCGTCCGATCAGAACCAGAGTCCGTATCCGAACCCACCCTCATCAGATTGCCCTCTGATTCCGAGCCCGCTGACGCCTGCGGCCGGTCGACCCGGTCAGCCTCCTTGTGCCCGGTCAATTGCTTCCGCCCTGACCCGGTCTGCGGCGTCGATGGCGTGACCTACTGGTGTGGGTGCCAAGATGCCCAATGCGCTGGGGTCAAGGTGGCGAAAATTGGGTTTTGTGAGGTGGGTAGCGGCGGCTCCGCCCCCCACTCTGCTCAAGCTTTGCTTTTGGTTCATATTGTTTGGCTCATCGTCCTCGGCTTCTCCGTCTTGTTCGGCCTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

14.62

Weight (kDa)

5.16

Isoelectric Point (pI)

47.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61980 AT4G01575
fragaria_vesca	FvH4_6g41470 FvH4_7g33250
malus_domestica	MD01G1231000.v1.1 MD07G1302300.v1.1 MD09G1119600.v1.1 MD17G1110400.v1.1
prunus_persica	Prupe.2G321500_v2.0.a1 Prupe.3G204600_v2.0.a1
pyrus_communis	pycom01g23900 pycom09g04440 pycom17g10270
rosa_chinensis	RchiOBHm_Chr1g0383241 RchiOBHm_Chr2g0157141
rosa_laevigata	RLG00000020964 RLG00000026120
rosa_multiflora	Rmu_co8303603.1_g000001 Rmu_sc0006282.1_g000025 Rmu_sc0007173.1_g000025
rosa_roxburghii	Rroxscaffold_2G00092500 Rroxscaffold_4G00277480
rosa_rugosa	Rorug01G0439700 Rorug02G0457700
rosa_samantha	Rh1AG465400 Rh1BG422800 Rh1CG436000 Rh1DG455500 Rh2AG523400 Rh2BG537800 Rh2CG508100 Rh2DG546500
rosa_wichuraiana	Rw1G040700 Rw2G031080 Rw2G043280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	258
AccI	GTMKAC	1 cut(s)	173
AciI	CCGC	7 cut(s)	153, 165, 211, 228, 321, 324, 330
AcoI	YGGCCR	1 cut(s)	166
AcyI	GRCGYC	2 cut(s)	159, 231
AfiI	CCNNNNNNNGG	3 cut(s)	168, 220, 227
AgsI	TTSAA	1 cut(s)	33
AluBI	AGCT	1 cut(s)	350
AluI	AGCT	1 cut(s)	350
AoxI	GGCC	2 cut(s)	166, 406
AspLEI	GCGC	1 cut(s)	278
AsuC2I	CCSGG	3 cut(s)	178, 197, 221
BaeGI	GKGCMC	1 cut(s)	197
BanI	GGYRCC	1 cut(s)	258
BanII	GRGCYC	1 cut(s)	153
BccI	CCATC	1 cut(s)	230
BceAI	ACGGC	1 cut(s)	71
BciVI	GTATCC	1 cut(s)	121
BcnI	CCSGG	3 cut(s)	178, 197, 221
BfuI	GTATCC	1 cut(s)	121
BisI	GCNGC	4 cut(s)	166, 229, 322, 325
BlsI	GCNGC	4 cut(s)	167, 230, 323, 326
Bme1390I	CCNGG	3 cut(s)	178, 197, 221
BmiI	GGNNCC	2 cut(s)	260, 328
BmrFI	CCNGG	3 cut(s)	178, 197, 221
BmsI	GCATC	1 cut(s)	256
BpuEI	CTTGAG	1 cut(s)	330
BpuMI	CCSGG	3 cut(s)	178, 197, 221
BsaHI	GRCGYC	2 cut(s)	159, 231
BsaJI	CCNNGG	1 cut(s)	385
Bsc4I	CCNNNNNNNGG	3 cut(s)	168, 220, 227
Bse118I	RCCGGY	1 cut(s)	168
Bse1I	ACTGG	1 cut(s)	254
BseDI	CCNNGG	1 cut(s)	385
BseLI	CCNNNNNNNGG	3 cut(s)	168, 220, 227
BseNI	ACTGG	1 cut(s)	254
BseSI	GKGCMC	1 cut(s)	197
BseX3I	CGGCCG	1 cut(s)	166
BseYI	CCCAGC	2 cut(s)	82, 278
Bsh1285I	CGRYCG	2 cut(s)	169, 173
BshFI	GGCC	2 cut(s)	168, 408
BshNI	GGYRCC	1 cut(s)	258
BsiEI	CGRYCG	2 cut(s)	169, 173
BsiSI	CCGG	4 cut(s)	169, 178, 197, 221
BslI	CCNNNNNNNGG	3 cut(s)	168, 220, 227
BsnI	GGCC	2 cut(s)	168, 408
Bsp1286I	GDGCHC	2 cut(s)	153, 197
Bsp143I	GATC	1 cut(s)	92
BspACI	CCGC	7 cut(s)	153, 165, 211, 228, 321, 324, 330
BspANI	GGCC	2 cut(s)	168, 408
BspLI	GGNNCC	2 cut(s)	260, 328
BspT107I	GGYRCC	1 cut(s)	258
BsrFI	RCCGGY	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	254
BssAI	RCCGGY	1 cut(s)	168
BssECI	CCNNGG	1 cut(s)	385
BssMI	GATC	1 cut(s)	92
BssNI	GRCGYC	2 cut(s)	159, 231
BstACI	GRCGYC	2 cut(s)	159, 231
BstC8I	GCNNGC	2 cut(s)	153, 163
BstHHI	GCGC	1 cut(s)	278
BstKTI	GATC	1 cut(s)	95
BstMBI	GATC	1 cut(s)	92
BstMCI	CGRYCG	2 cut(s)	169, 173
BstMWI	GCNNNNNNNGC	2 cut(s)	237, 275
BstSCI	CCNGG	3 cut(s)	176, 195, 219
BstSLI	GKGCMC	1 cut(s)	197
BstXI	CCANNNNNNTGG	1 cut(s)	278
BstZI	CGGCCG	1 cut(s)	166
BsuI	GTATCC	1 cut(s)	121
BsuRI	GGCC	2 cut(s)	168, 408
Cac8I	GCNNGC	2 cut(s)	153, 163
CfoI	GCGC	1 cut(s)	278
Cfr10I	RCCGGY	1 cut(s)	168
CseI	GACGC	2 cut(s)	167, 220
CviJI	RGCY	9 cut(s)	86, 151, 168, 185, 327, 350, 376, 390, 408
CviKI_1	RGCY	9 cut(s)	86, 151, 168, 185, 327, 350, 376, 390, 408
DpnI	GATC	1 cut(s)	94
DpnII	GATC	1 cut(s)	92
EaeI	YGGCCR	1 cut(s)	166
EagI	CGGCCG	1 cut(s)	166
EciI	GGCGGA	2 cut(s)	200, 319
EclXI	CGGCCG	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	153
Eco52I	CGGCCG	1 cut(s)	166
EcoT38I	GRGCYC	1 cut(s)	153
FaiI	YATR	1 cut(s)	366
FalI	AAGNNNNNCTT	2 cut(s)	339, 371
FauI	CCCGC	1 cut(s)	160
FblI	GTMKAC	1 cut(s)	173
Fnu4HI	GCNGC	4 cut(s)	166, 229, 322, 325
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	4 cut(s)	166, 229, 322, 325
GlaI	GCGC	1 cut(s)	277
GluI	GCNGC	4 cut(s)	166, 229, 322, 325
GsaI	CCCAGC	2 cut(s)	86, 282
HaeIII	GGCC	2 cut(s)	168, 408
HapII	CCGG	4 cut(s)	169, 178, 197, 221
HgaI	GACGC	2 cut(s)	167, 220
HhaI	GCGC	1 cut(s)	278
Hin1I	GRCGYC	2 cut(s)	159, 231
Hin6I	GCGC	1 cut(s)	276
HinP1I	GCGC	1 cut(s)	276
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HindIII	AAGCTT	1 cut(s)	348
HinfI	GANTC	2 cut(s)	104, 143
HpaII	CCGG	4 cut(s)	169, 178, 197, 221
Hpy166II	GTNNAC	1 cut(s)	174
Hpy188I	TCNGA	7 cut(s)	92, 97, 115, 131, 142, 148, 416
Hpy8I	GTNNAC	1 cut(s)	174
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	2 cut(s)	67, 88
HpyF10VI	GCNNNNNNNGC	2 cut(s)	237, 275
Hsp92I	GRCGYC	2 cut(s)	159, 231
HspAI	GCGC	1 cut(s)	276
Kzo9I	GATC	1 cut(s)	92
LmnI	GCTCC	2 cut(s)	80, 332
LweI	GCATC	1 cut(s)	256
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	1 cut(s)	94
MboI	GATC	1 cut(s)	92
MboII	GAAGA	2 cut(s)	30, 52
MfeI	CAATTG	1 cut(s)	202
MhlI	GDGCHC	2 cut(s)	153, 197
MluCI	AATT	5 cut(s)	11, 27, 33, 202, 297
MlyI	GAGTC	1 cut(s)	113
MnlI	CCTC	6 cut(s)	80, 134, 148, 196, 304, 395
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	4 cut(s)	169, 178, 197, 221
MspR9I	CCNGG	3 cut(s)	178, 197, 221
MunI	CAATTG	1 cut(s)	202
MwoI	GCNNNNNNNGC	2 cut(s)	237, 275
NciI	CCSGG	3 cut(s)	178, 197, 221
NdeII	GATC	1 cut(s)	92
NlaIV	GGNNCC	2 cut(s)	260, 328
NmeAIII	GCCGAG	1 cut(s)	366
NmuCI	GTSAC	1 cut(s)	241
PcsI	WCGNNNNNNNCGW	1 cut(s)	393
PfeI	GAWTC	1 cut(s)	143
PflFI	GACNNNGTC	2 cut(s)	178, 221
PkrI	GCNGC	4 cut(s)	167, 230, 323, 326
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PspFI	CCCAGC	2 cut(s)	82, 278
PspN4I	GGNNCC	2 cut(s)	260, 328
PsyI	GACNNNGTC	2 cut(s)	178, 221
SalI	GTCGAC	1 cut(s)	172
SatI	GCNGC	4 cut(s)	166, 229, 322, 325
Sau3AI	GATC	1 cut(s)	92
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	3 cut(s)	178, 197, 221
SduI	GDGCHC	2 cut(s)	153, 197
SetI	ASST	4 cut(s)	248, 291, 315, 352
SfaNI	GCATC	1 cut(s)	256
SmlI	CTYRAG	1 cut(s)	345
SmoI	CTYRAG	1 cut(s)	345
Sse9I	AATT	5 cut(s)	11, 27, 33, 202, 297
SsiI	CCGC	7 cut(s)	153, 165, 211, 228, 321, 324, 330
StyD4I	CCNGG	3 cut(s)	176, 195, 219
TaqI	TCGA	2 cut(s)	173, 234
TasI	AATT	5 cut(s)	11, 27, 33, 202, 297
TauI	GCSGC	4 cut(s)	168, 231, 324, 327
TfiI	GAWTC	1 cut(s)	143
TseFI	GTSAC	1 cut(s)	241
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	2 cut(s)	52, 353
TspGWI	ACGGA	2 cut(s)	97, 385
Tth111I	GACNNNGTC	2 cut(s)	178, 221
XmiI	GTMKAC	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.