Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003543

Physical Location & Seq

Genomic Coordinates Reverse (-)

14034097 .. 14034683

Gene Structure 587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00092500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGCCTACCGACTCCATATCCGACGGCGGCGACGCCTGCCGCGGCTCGTCTCTGTCACGGTCCCCGGCCGTGTGCCCCGTCAATTGCTTCCGGCCCGACCCGGTCTGCGGCGTCGACGGCGTCACGTACTGGTGCGGGTGCCCGGATGCGCAGTGCGCCGGGGTCAAGGTCGCCAAGTTAGGGTTCTGCGAGGTGGGGAGTGCCGGCTCTGCCCCTCAGGCCTTGCTCTTGGTTCACATTGTCTGGCTCATCGTCCTCGGCTTTTCGGTCTTCAGCTCTAGCAGAGTTCTTGGCTACATTGCGGGTTTCGGATTTTCGGCAGCTGCCACTGGGGAATTTCGTCGAACATTTGATGTGCATTGCTTGACAGGGAGGGATATTGGTTGTGGGTTATTGGGAAGAACCCATGAGAAGTTAAAATTGTTTGGTGTCATGGTACATTTAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

149

Amino Acids

15.6

Weight (kDa)

6.86

Isoelectric Point (pI)

39.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61980 AT4G01575
fragaria_vesca	FvH4_6g41470 FvH4_7g33250
malus_domestica	MD01G1231000.v1.1 MD07G1302300.v1.1 MD09G1119600.v1.1 MD17G1110400.v1.1
prunus_persica	Prupe.2G321500_v2.0.a1 Prupe.3G204600_v2.0.a1
pyrus_communis	pycom01g23900 pycom09g04440 pycom17g10270
rosa_chinensis	RchiOBHm_Chr1g0383241 RchiOBHm_Chr2g0157141
rosa_laevigata	RLG00000020964 RLG00000026120
rosa_multiflora	Rmu_co8303603.1_g000001 Rmu_sc0006282.1_g000025 Rmu_sc0007173.1_g000025
rosa_roxburghii	Rroxscaffold_2G00092500 Rroxscaffold_4G00277480
rosa_rugosa	Rorug01G0439700 Rorug02G0457700
rosa_samantha	Rh1AG465400 Rh1BG422800 Rh1CG436000 Rh1DG455500 Rh2AG523400 Rh2BG537800 Rh2CG508100 Rh2DG546500
rosa_wichuraiana	Rw1G040700 Rw2G031080 Rw2G043280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	150
AccB1I	GGYRCC	1 cut(s)	138
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	1 cut(s)	42
AciI	CCGC	6 cut(s)	27, 40, 42, 108, 135, 302
AcoI	YGGCCR	1 cut(s)	66
AcsI	RAATTY	1 cut(s)	335
AcuI	CTGAAG	1 cut(s)	256
AcyI	GRCGYC	3 cut(s)	33, 111, 120
AfaI	GTAC	2 cut(s)	128, 438
AfiI	CCNNNNNNNGG	2 cut(s)	107, 180
AjuI	GAANNNNNNNTTGG	2 cut(s)	167, 199
AluBI	AGCT	2 cut(s)	276, 323
AluI	AGCT	2 cut(s)	276, 323
Alw26I	GTCTC	1 cut(s)	54
AoxI	GGCC	3 cut(s)	66, 92, 219
ApeKI	GCWGC	2 cut(s)	320, 323
ApoI	RAATTY	1 cut(s)	335
AspLEI	GCGC	2 cut(s)	151, 158
AspS9I	GGNCC	2 cut(s)	60, 93
AsuC2I	CCSGG	4 cut(s)	65, 101, 143, 160
AvaII	GGWCC	1 cut(s)	60
AxyI	CCTNAGG	1 cut(s)	216
BaeGI	GKGCMC	2 cut(s)	77, 143
BanI	GGYRCC	1 cut(s)	138
BbsI	GAAGAC	1 cut(s)	262
BbvI	GCAGC	2 cut(s)	310, 332
BceAI	ACGGC	3 cut(s)	40, 53, 133
BcnI	CCSGG	4 cut(s)	65, 101, 143, 160
BcoDI	GTCTC	1 cut(s)	54
BfaI	CTAG	1 cut(s)	279
BglI	GCCNNNNNGGC	1 cut(s)	218
BisI	GCNGC	6 cut(s)	28, 40, 43, 109, 321, 324
BlsI	GCNGC	6 cut(s)	29, 41, 44, 110, 322, 325
Bme1390I	CCNGG	4 cut(s)	65, 101, 143, 160
Bme18I	GGWCC	1 cut(s)	60
BmgT120I	GGNCC	2 cut(s)	60, 93
BmiI	GGNNCC	2 cut(s)	62, 140
BmrFI	CCNGG	4 cut(s)	65, 101, 143, 160
BmrI	ACTGGG	1 cut(s)	339
BmsI	GCATC	1 cut(s)	136
BmuI	ACTGGG	1 cut(s)	339
BpiI	GAAGAC	1 cut(s)	262
BpuMI	CCSGG	4 cut(s)	65, 101, 143, 160
BsaAI	YACGTR	1 cut(s)	126
BsaHI	GRCGYC	3 cut(s)	33, 111, 120
BsaJI	CCNNGG	4 cut(s)	40, 63, 159, 256
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 180
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	2 cut(s)	134, 334
Bse21I	CCTNAGG	1 cut(s)	216
Bse3DI	GCAATG	2 cut(s)	297, 358
BseDI	CCNNGG	4 cut(s)	40, 63, 159, 256
BseGI	GGATG	1 cut(s)	151
BseLI	CCNNNNNNNGG	2 cut(s)	107, 180
BseMI	GCAATG	2 cut(s)	297, 358
BseMII	CTCAG	1 cut(s)	230
BseNI	ACTGG	2 cut(s)	134, 334
BseSI	GKGCMC	2 cut(s)	77, 143
BseX3I	CGGCCG	1 cut(s)	66
BseXI	GCAGC	2 cut(s)	310, 332
Bsh1236I	CGCG	1 cut(s)	42
Bsh1285I	CGRYCG	1 cut(s)	69
BshFI	GGCC	3 cut(s)	68, 94, 221
BshNI	GGYRCC	1 cut(s)	138
BsiEI	CGRYCG	1 cut(s)	69
BsiSI	CCGG	6 cut(s)	65, 91, 101, 143, 159, 204
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	2 cut(s)	107, 180
BsmAI	GTCTC	1 cut(s)	54
BsmBI	CGTCTC	1 cut(s)	54
BsmFI	GGGAC	1 cut(s)	46
BsnI	GGCC	3 cut(s)	68, 94, 221
Bsp1286I	GDGCHC	2 cut(s)	77, 143
BspACI	CCGC	6 cut(s)	27, 40, 42, 108, 135, 302
BspANI	GGCC	3 cut(s)	68, 94, 221
BspCNI	CTCAG	1 cut(s)	229
BspFNI	CGCG	1 cut(s)	42
BspLI	GGNNCC	2 cut(s)	62, 140
BspT107I	GGYRCC	1 cut(s)	138
BsrDI	GCAATG	2 cut(s)	297, 358
BsrFI	RCCGGY	1 cut(s)	203
BsrI	ACTGG	2 cut(s)	134, 334
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	4 cut(s)	40, 63, 159, 256
BssNI	GRCGYC	3 cut(s)	33, 111, 120
Bst4CI	ACNGT	1 cut(s)	60
BstACI	GRCGYC	3 cut(s)	33, 111, 120
BstBAI	YACGTR	1 cut(s)	126
BstC8I	GCNNGC	2 cut(s)	37, 205
BstDEI	CTNAG	1 cut(s)	216
BstDSI	CCRYGG	1 cut(s)	40
BstF5I	GGATG	1 cut(s)	151
BstFNI	CGCG	1 cut(s)	42
BstHHI	GCGC	2 cut(s)	151, 158
BstMAI	GTCTC	1 cut(s)	54
BstMCI	CGRYCG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	5 cut(s)	36, 117, 155, 209, 218
BstSCI	CCNGG	4 cut(s)	63, 99, 141, 158
BstSLI	GKGCMC	2 cut(s)	77, 143
BstUI	CGCG	1 cut(s)	42
BstV1I	GCAGC	2 cut(s)	310, 332
BstV2I	GAAGAC	1 cut(s)	262
BstZI	CGGCCG	1 cut(s)	66
Bsu36I	CCTNAGG	1 cut(s)	216
BsuRI	GGCC	3 cut(s)	68, 94, 221
BtgI	CCRYGG	1 cut(s)	40
BtsCI	GGATG	1 cut(s)	151
BtsI	GCAGTG	1 cut(s)	158
BtsIMutI	CAGTG	2 cut(s)	158, 327
Cac8I	GCNNGC	2 cut(s)	37, 205
CfoI	GCGC	2 cut(s)	151, 158
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	2 cut(s)	60, 93
Cfr42I	CCGCGG	1 cut(s)	43
CseI	GACGC	3 cut(s)	41, 100, 109
Csp6I	GTAC	2 cut(s)	127, 437
CviAII	CATG	2 cut(s)	407, 433
CviQI	GTAC	2 cut(s)	127, 437
DdeI	CTNAG	1 cut(s)	216
EaeI	YGGCCR	1 cut(s)	66
EagI	CGGCCG	1 cut(s)	66
EclXI	CGGCCG	1 cut(s)	66
Eco147I	AGGCCT	1 cut(s)	221
Eco47I	GGWCC	1 cut(s)	60
Eco52I	CGGCCG	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	256
Eco81I	CCTNAGG	1 cut(s)	216
Esp3I	CGTCTC	1 cut(s)	54
FaeI	CATG	2 cut(s)	410, 436
FaiI	YATR	3 cut(s)	17, 408, 434
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	2 cut(s)	406, 432
FauI	CCCGC	2 cut(s)	128, 295
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	6 cut(s)	28, 40, 43, 109, 321, 324
FokI	GGATG	1 cut(s)	158
Fsp4HI	GCNGC	6 cut(s)	28, 40, 43, 109, 321, 324
FspBI	CTAG	1 cut(s)	279
FspI	TGCGCA	1 cut(s)	150
GlaI	GCGC	2 cut(s)	150, 157
GluI	GCNGC	6 cut(s)	28, 40, 43, 109, 321, 324
HaeIII	GGCC	3 cut(s)	68, 94, 221
HapII	CCGG	6 cut(s)	65, 91, 101, 143, 159, 204
HgaI	GACGC	3 cut(s)	41, 100, 109
HhaI	GCGC	2 cut(s)	151, 158
Hin1I	GRCGYC	3 cut(s)	33, 111, 120
Hin1II	CATG	2 cut(s)	410, 436
Hin6I	GCGC	2 cut(s)	149, 156
HinP1I	GCGC	2 cut(s)	149, 156
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	1 cut(s)	11
HpaII	CCGG	6 cut(s)	65, 91, 101, 143, 159, 204
Hpy166II	GTNNAC	2 cut(s)	115, 235
Hpy188I	TCNGA	2 cut(s)	22, 311
Hpy8I	GTNNAC	2 cut(s)	115, 235
Hpy99I	CGWCG	5 cut(s)	26, 35, 116, 119, 345
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4IV	ACGT	1 cut(s)	125
HpyCH4V	TGCA	1 cut(s)	358
HpyF10VI	GCNNNNNNNGC	5 cut(s)	36, 117, 155, 209, 218
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	1 cut(s)	125
Hsp92I	GRCGYC	3 cut(s)	33, 111, 120
Hsp92II	CATG	2 cut(s)	410, 436
HspAI	GCGC	2 cut(s)	149, 156
KroI	GCCGGC	1 cut(s)	203
KroNI	GCCGGC	1 cut(s)	205
KspI	CCGCGG	1 cut(s)	43
Lsp1109I	GCAGC	2 cut(s)	310, 332
LweI	GCATC	1 cut(s)	136
MaeI	CTAG	1 cut(s)	279
MaeII	ACGT	1 cut(s)	125
MaeIII	GTNAC	2 cut(s)	54, 121
MboII	GAAGA	2 cut(s)	262, 411
MfeI	CAATTG	1 cut(s)	82
MhlI	GDGCHC	2 cut(s)	77, 143
MluCI	AATT	3 cut(s)	82, 335, 419
MlyI	GAGTC	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	4 cut(s)	184, 225, 266, 366
MroNI	GCCGGC	1 cut(s)	203
MseI	TTAA	1 cut(s)	416
MspA1I	CMGCKG	2 cut(s)	42, 323
MspI	CCGG	6 cut(s)	65, 91, 101, 143, 159, 204
MspR9I	CCNGG	4 cut(s)	65, 101, 143, 160
MunI	CAATTG	1 cut(s)	82
MvnI	CGCG	1 cut(s)	42
MwoI	GCNNNNNNNGC	5 cut(s)	36, 117, 155, 209, 218
NaeI	GCCGGC	1 cut(s)	205
NciI	CCSGG	4 cut(s)	65, 101, 143, 160
NgoMIV	GCCGGC	1 cut(s)	203
NlaIII	CATG	2 cut(s)	410, 436
NlaIV	GGNNCC	2 cut(s)	62, 140
NmeAIII	GCCGAG	1 cut(s)	237
NmuCI	GTSAC	2 cut(s)	54, 121
NsbI	TGCGCA	1 cut(s)	150
PceI	AGGCCT	1 cut(s)	221
PdiI	GCCGGC	1 cut(s)	205
PflFI	GACNNNGTC	2 cut(s)	101, 119
PkrI	GCNGC	6 cut(s)	29, 41, 44, 110, 322, 325
PleI	GAGTC	1 cut(s)	5
PpsI	GAGTC	1 cut(s)	5
Ppu21I	YACGTR	1 cut(s)	126
PspN4I	GGNNCC	2 cut(s)	62, 140
PspPI	GGNCC	2 cut(s)	60, 93
PsyI	GACNNNGTC	2 cut(s)	101, 119
PvuII	CAGCTG	1 cut(s)	323
RsaI	GTAC	2 cut(s)	128, 438
RsaNI	GTAC	2 cut(s)	127, 437
SacII	CCGCGG	1 cut(s)	43
SalI	GTCGAC	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	416
SatI	GCNGC	6 cut(s)	28, 40, 43, 109, 321, 324
Sau96I	GGNCC	2 cut(s)	60, 93
SchI	GAGTC	1 cut(s)	5
ScrFI	CCNGG	4 cut(s)	65, 101, 143, 160
SduI	GDGCHC	2 cut(s)	77, 143
SetI	ASST	5 cut(s)	128, 171, 195, 278, 325
SfaNI	GCATC	1 cut(s)	136
Sfr303I	CCGCGG	1 cut(s)	43
SgrBI	CCGCGG	1 cut(s)	43
SgrDI	CGTCGACG	1 cut(s)	113
SinI	GGWCC	1 cut(s)	60
Sse9I	AATT	3 cut(s)	82, 335, 419
SseBI	AGGCCT	1 cut(s)	221
SsiI	CCGC	6 cut(s)	27, 40, 42, 108, 135, 302
SspMI	CTAG	1 cut(s)	279
StuI	AGGCCT	1 cut(s)	221
StyD4I	CCNGG	4 cut(s)	63, 99, 141, 158
TaaI	ACNGT	1 cut(s)	60
TaiI	ACGT	1 cut(s)	128
TaqI	TCGA	2 cut(s)	114, 343
TaqII	GACCGA	1 cut(s)	256
TasI	AATT	3 cut(s)	82, 335, 419
TauI	GCSGC	4 cut(s)	30, 42, 45, 111
Tru1I	TTAA	1 cut(s)	416
Tru9I	TTAA	1 cut(s)	416
TscAI	CASTG	2 cut(s)	158, 334
TseFI	GTSAC	2 cut(s)	54, 121
TseI	GCWGC	2 cut(s)	320, 323
Tsp45I	GTSAC	2 cut(s)	54, 121
TspRI	CASTG	2 cut(s)	158, 334
Tth111I	GACNNNGTC	2 cut(s)	101, 119
VpaK11BI	GGWCC	1 cut(s)	60
XapI	RAATTY	1 cut(s)	335
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.