Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003543

Physical Location & Seq

Genomic Coordinates Forward (+)

70555702 .. 70556394

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020964

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGATCTCAATTTCATCAAATCCCAAGCCCCTCTAGTCCTTTTCACCGTCTTCATCATCCTCTGCTCCTTCCCCACCGTCCGATCCGACCCCATCATCAAAATGCCTACCGACTCCATATCCGACGGCGGCGACGCCTGCCGCGGCTCGTCTCTGTCACGGTCTCCGGCCGTGTGCCCCGTCAATTGCTTCCGGCCCGACCCGGTCTGCGGCGTCGACGGCGTCACGTACTGGTGCGGGTGCCCGGATGCGCAGTGCGCCGGGGTCAAGGTCGCCAAGTTAGGGTTTTGCGAGGTGGGGAGTGCCGGTTCTGCCCCTCAGGCCTTGCTTTTGGTTCACATTGTCTGGCTCATCGTCCTCGGCTTTTCGCTCTCTAGCAGAGTTCTTGACTACATTGCGGATTTCGGATTTTCGGCAGCTGCCACTGGGGAATTACGTCGAACACTTGATGTGCATTGCTTGACAGGGAGGGATATTGGTTGTGGGTTATTGGGAAGAACCCATGAGAAGTTAAAATTATTTGGTGTCATGATACATGTAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

182

Amino Acids

19.28

Weight (kDa)

6.4

Isoelectric Point (pI)

40.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61980 AT4G01575
fragaria_vesca	FvH4_6g41470 FvH4_7g33250
malus_domestica	MD01G1231000.v1.1 MD07G1302300.v1.1 MD09G1119600.v1.1 MD17G1110400.v1.1
prunus_persica	Prupe.2G321500_v2.0.a1 Prupe.3G204600_v2.0.a1
pyrus_communis	pycom01g23900 pycom09g04440 pycom17g10270
rosa_chinensis	RchiOBHm_Chr1g0383241 RchiOBHm_Chr2g0157141
rosa_laevigata	RLG00000020964 RLG00000026120
rosa_multiflora	Rmu_co8303603.1_g000001 Rmu_sc0006282.1_g000025 Rmu_sc0007173.1_g000025
rosa_roxburghii	Rroxscaffold_2G00092500 Rroxscaffold_4G00277480
rosa_rugosa	Rorug01G0439700 Rorug02G0457700
rosa_samantha	Rh1AG465400 Rh1BG422800 Rh1CG436000 Rh1DG455500 Rh2AG523400 Rh2BG537800 Rh2CG508100 Rh2DG546500
rosa_wichuraiana	Rw1G040700 Rw2G031080 Rw2G043280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	252
AccB1I	GGYRCC	1 cut(s)	240
AccI	GTMKAC	1 cut(s)	216
AccII	CGCG	1 cut(s)	144
AciI	CCGC	6 cut(s)	129, 142, 144, 210, 237, 398
AclWI	GGATC	2 cut(s)	12, 78
AcoI	YGGCCR	1 cut(s)	168
AcyI	GRCGYC	3 cut(s)	135, 213, 222
AfaI	GTAC	1 cut(s)	230
AfiI	CCNNNNNNNGG	2 cut(s)	209, 282
AflIII	ACRYGT	1 cut(s)	535
AloI	GAACNNNNNNTCC	2 cut(s)	292, 324
AluBI	AGCT	1 cut(s)	419
AluI	AGCT	1 cut(s)	419
Alw26I	GTCTC	2 cut(s)	156, 168
AlwI	GGATC	2 cut(s)	12, 78
AoxI	GGCC	3 cut(s)	168, 194, 321
ApeKI	GCWGC	2 cut(s)	416, 419
AspLEI	GCGC	2 cut(s)	253, 260
AspS9I	GGNCC	1 cut(s)	195
AsuC2I	CCSGG	3 cut(s)	203, 245, 262
AsuHPI	GGTGA	1 cut(s)	37
AxyI	CCTNAGG	1 cut(s)	318
BaeGI	GKGCMC	2 cut(s)	179, 245
BanI	GGYRCC	1 cut(s)	240
BbsI	GAAGAC	1 cut(s)	43
BbvI	GCAGC	2 cut(s)	406, 428
BccI	CCATC	1 cut(s)	101
BceAI	ACGGC	3 cut(s)	142, 155, 235
BcnI	CCSGG	3 cut(s)	203, 245, 262
BcoDI	GTCTC	2 cut(s)	156, 168
BfaI	CTAG	2 cut(s)	35, 375
BglI	GCCNNNNNGGC	1 cut(s)	320
BisI	GCNGC	6 cut(s)	130, 142, 145, 211, 417, 420
BlsI	GCNGC	6 cut(s)	131, 143, 146, 212, 418, 421
Bme1390I	CCNGG	3 cut(s)	203, 245, 262
BmgT120I	GGNCC	1 cut(s)	195
BmiI	GGNNCC	1 cut(s)	242
BmrFI	CCNGG	3 cut(s)	203, 245, 262
BmrI	ACTGGG	1 cut(s)	435
BmsI	GCATC	1 cut(s)	238
BmuI	ACTGGG	1 cut(s)	435
BpiI	GAAGAC	1 cut(s)	43
BpuMI	CCSGG	3 cut(s)	203, 245, 262
BsaAI	YACGTR	1 cut(s)	228
BsaHI	GRCGYC	3 cut(s)	135, 213, 222
BsaI	GGTCTC	1 cut(s)	168
BsaJI	CCNNGG	3 cut(s)	142, 261, 358
BsaXI	ACNNNNNCTCC	2 cut(s)	292, 322
Bsc4I	CCNNNNNNNGG	2 cut(s)	209, 282
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	2 cut(s)	236, 430
Bse21I	CCTNAGG	1 cut(s)	318
Bse3DI	GCAATG	2 cut(s)	393, 454
BseDI	CCNNGG	3 cut(s)	142, 261, 358
BseGI	GGATG	2 cut(s)	57, 253
BseLI	CCNNNNNNNGG	2 cut(s)	209, 282
BseMI	GCAATG	2 cut(s)	393, 454
BseMII	CTCAG	1 cut(s)	332
BseNI	ACTGG	2 cut(s)	236, 430
BseSI	GKGCMC	2 cut(s)	179, 245
BseX3I	CGGCCG	1 cut(s)	168
BseXI	GCAGC	2 cut(s)	406, 428
Bsh1236I	CGCG	1 cut(s)	144
Bsh1285I	CGRYCG	1 cut(s)	171
BshFI	GGCC	3 cut(s)	170, 196, 323
BshNI	GGYRCC	1 cut(s)	240
BsiEI	CGRYCG	1 cut(s)	171
BsiSI	CCGG	6 cut(s)	167, 193, 203, 245, 261, 306
BslI	CCNNNNNNNGG	2 cut(s)	209, 282
BsmAI	GTCTC	2 cut(s)	156, 168
BsmBI	CGTCTC	1 cut(s)	156
BsnI	GGCC	3 cut(s)	170, 196, 323
Bso31I	GGTCTC	1 cut(s)	168
Bsp1286I	GDGCHC	2 cut(s)	179, 245
Bsp143I	GATC	2 cut(s)	4, 83
BspACI	CCGC	6 cut(s)	129, 142, 144, 210, 237, 398
BspANI	GGCC	3 cut(s)	170, 196, 323
BspCNI	CTCAG	1 cut(s)	331
BspFNI	CGCG	1 cut(s)	144
BspHI	TCATGA	1 cut(s)	528
BspLI	GGNNCC	1 cut(s)	242
BspPI	GGATC	2 cut(s)	12, 78
BspT107I	GGYRCC	1 cut(s)	240
BspTNI	GGTCTC	1 cut(s)	168
BsrDI	GCAATG	2 cut(s)	393, 454
BsrFI	RCCGGY	1 cut(s)	305
BsrI	ACTGG	2 cut(s)	236, 430
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	3 cut(s)	142, 261, 358
BssMI	GATC	2 cut(s)	4, 83
BssNI	GRCGYC	3 cut(s)	135, 213, 222
Bst4CI	ACNGT	3 cut(s)	49, 79, 162
BstACI	GRCGYC	3 cut(s)	135, 213, 222
BstBAI	YACGTR	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	139
BstDEI	CTNAG	1 cut(s)	318
BstDSI	CCRYGG	1 cut(s)	142
BstF5I	GGATG	2 cut(s)	57, 253
BstFNI	CGCG	1 cut(s)	144
BstHHI	GCGC	2 cut(s)	253, 260
BstKTI	GATC	2 cut(s)	7, 86
BstMAI	GTCTC	2 cut(s)	156, 168
BstMBI	GATC	2 cut(s)	4, 83
BstMCI	CGRYCG	1 cut(s)	171
BstMWI	GCNNNNNNNGC	5 cut(s)	138, 219, 257, 311, 320
BstNSI	RCATGY	1 cut(s)	539
BstSCI	CCNGG	3 cut(s)	201, 243, 260
BstSLI	GKGCMC	2 cut(s)	179, 245
BstUI	CGCG	1 cut(s)	144
BstV1I	GCAGC	2 cut(s)	406, 428
BstV2I	GAAGAC	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BstZI	CGGCCG	1 cut(s)	168
Bsu36I	CCTNAGG	1 cut(s)	318
BsuRI	GGCC	3 cut(s)	170, 196, 323
BtgI	CCRYGG	1 cut(s)	142
BtsCI	GGATG	2 cut(s)	57, 253
BtsI	GCAGTG	1 cut(s)	260
BtsIMutI	CAGTG	2 cut(s)	260, 423
Cac8I	GCNNGC	1 cut(s)	139
CciI	TCATGA	1 cut(s)	528
CfoI	GCGC	2 cut(s)	253, 260
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	1 cut(s)	195
Cfr42I	CCGCGG	1 cut(s)	145
CseI	GACGC	3 cut(s)	143, 202, 211
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	3 cut(s)	503, 529, 536
CviJI	RGCY	8 cut(s)	29, 147, 170, 196, 323, 349, 363, 419
CviKI_1	RGCY	8 cut(s)	29, 147, 170, 196, 323, 349, 363, 419
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	1 cut(s)	318
DpnI	GATC	2 cut(s)	6, 85
DpnII	GATC	2 cut(s)	4, 83
EaeI	YGGCCR	1 cut(s)	168
EagI	CGGCCG	1 cut(s)	168
EclXI	CGGCCG	1 cut(s)	168
Eco147I	AGGCCT	1 cut(s)	323
Eco31I	GGTCTC	1 cut(s)	168
Eco52I	CGGCCG	1 cut(s)	168
Eco81I	CCTNAGG	1 cut(s)	318
Esp3I	CGTCTC	1 cut(s)	156
FaeI	CATG	3 cut(s)	506, 532, 539
FaiI	YATR	4 cut(s)	119, 504, 530, 537
FatI	CATG	3 cut(s)	502, 528, 535
FauI	CCCGC	1 cut(s)	230
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	6 cut(s)	130, 142, 145, 211, 417, 420
FokI	GGATG	2 cut(s)	44, 260
Fsp4HI	GCNGC	6 cut(s)	130, 142, 145, 211, 417, 420
FspBI	CTAG	2 cut(s)	35, 375
FspI	TGCGCA	1 cut(s)	252
GlaI	GCGC	2 cut(s)	252, 259
GluI	GCNGC	6 cut(s)	130, 142, 145, 211, 417, 420
HaeIII	GGCC	3 cut(s)	170, 196, 323
HapII	CCGG	6 cut(s)	167, 193, 203, 245, 261, 306
HgaI	GACGC	3 cut(s)	143, 202, 211
HhaI	GCGC	2 cut(s)	253, 260
Hin1I	GRCGYC	3 cut(s)	135, 213, 222
Hin1II	CATG	3 cut(s)	506, 532, 539
Hin6I	GCGC	2 cut(s)	251, 258
HinP1I	GCGC	2 cut(s)	251, 258
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	1 cut(s)	113
HpaII	CCGG	6 cut(s)	167, 193, 203, 245, 261, 306
HphI	GGTGA	1 cut(s)	37
Hpy166II	GTNNAC	2 cut(s)	217, 337
Hpy188I	TCNGA	4 cut(s)	83, 88, 124, 407
Hpy188III	TCNNGA	2 cut(s)	386, 529
Hpy8I	GTNNAC	2 cut(s)	217, 337
Hpy99I	CGWCG	5 cut(s)	128, 137, 218, 221, 441
HpyAV	CCTTC	1 cut(s)	79
HpyCH4III	ACNGT	3 cut(s)	49, 79, 162
HpyCH4IV	ACGT	2 cut(s)	227, 436
HpyCH4V	TGCA	1 cut(s)	454
HpyF10VI	GCNNNNNNNGC	5 cut(s)	138, 219, 257, 311, 320
HpyF3I	CTNAG	1 cut(s)	318
HpySE526I	ACGT	2 cut(s)	227, 436
Hsp92I	GRCGYC	3 cut(s)	135, 213, 222
Hsp92II	CATG	3 cut(s)	506, 532, 539
HspAI	GCGC	2 cut(s)	251, 258
KspI	CCGCGG	1 cut(s)	145
Kzo9I	GATC	2 cut(s)	4, 83
LmnI	GCTCC	1 cut(s)	71
Lsp1109I	GCAGC	2 cut(s)	406, 428
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	2 cut(s)	35, 375
MaeII	ACGT	2 cut(s)	227, 436
MaeIII	GTNAC	2 cut(s)	156, 223
MalI	GATC	2 cut(s)	6, 85
MboI	GATC	2 cut(s)	4, 83
MboII	GAAGA	2 cut(s)	43, 507
MfeI	CAATTG	1 cut(s)	184
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	2 cut(s)	179, 245
MluCI	AATT	4 cut(s)	10, 184, 431, 515
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	2 cut(s)	111, 147
MnlI	CCTC	6 cut(s)	42, 71, 286, 327, 368, 462
MseI	TTAA	1 cut(s)	512
MslI	CAYNNNNRTG	1 cut(s)	101
MspA1I	CMGCKG	2 cut(s)	144, 419
MspI	CCGG	6 cut(s)	167, 193, 203, 245, 261, 306
MspR9I	CCNGG	3 cut(s)	203, 245, 262
MunI	CAATTG	1 cut(s)	184
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	5 cut(s)	138, 219, 257, 311, 320
NciI	CCSGG	3 cut(s)	203, 245, 262
NdeII	GATC	2 cut(s)	4, 83
NlaIII	CATG	3 cut(s)	506, 532, 539
NlaIV	GGNNCC	1 cut(s)	242
NmeAIII	GCCGAG	1 cut(s)	339
NmuCI	GTSAC	2 cut(s)	156, 223
NsbI	TGCGCA	1 cut(s)	252
NspI	RCATGY	1 cut(s)	539
PagI	TCATGA	1 cut(s)	528
PceI	AGGCCT	1 cut(s)	323
PciI	ACATGT	1 cut(s)	535
PflFI	GACNNNGTC	2 cut(s)	203, 221
PkrI	GCNGC	6 cut(s)	131, 143, 146, 212, 418, 421
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
Ppu21I	YACGTR	1 cut(s)	228
PscI	ACATGT	1 cut(s)	535
PspN4I	GGNNCC	1 cut(s)	242
PspPI	GGNCC	1 cut(s)	195
PsuI	RGATCY	1 cut(s)	4
PsyI	GACNNNGTC	2 cut(s)	203, 221
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
RseI	CAYNNNNRTG	1 cut(s)	101
SacII	CCGCGG	1 cut(s)	145
SalI	GTCGAC	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	512
SatI	GCNGC	6 cut(s)	130, 142, 145, 211, 417, 420
Sau3AI	GATC	2 cut(s)	4, 83
Sau96I	GGNCC	1 cut(s)	195
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	3 cut(s)	203, 245, 262
SduI	GDGCHC	2 cut(s)	179, 245
SetI	ASST	5 cut(s)	230, 273, 297, 421, 439
SfaNI	GCATC	1 cut(s)	238
Sfr303I	CCGCGG	1 cut(s)	145
SgrBI	CCGCGG	1 cut(s)	145
SgrDI	CGTCGACG	1 cut(s)	215
SmiMI	CAYNNNNRTG	1 cut(s)	101
Sse9I	AATT	4 cut(s)	10, 184, 431, 515
SseBI	AGGCCT	1 cut(s)	323
SsiI	CCGC	6 cut(s)	129, 142, 144, 210, 237, 398
SspMI	CTAG	2 cut(s)	35, 375
StuI	AGGCCT	1 cut(s)	323
StyD4I	CCNGG	3 cut(s)	201, 243, 260
TaaI	ACNGT	3 cut(s)	49, 79, 162
TaiI	ACGT	2 cut(s)	230, 439
TaqI	TCGA	2 cut(s)	216, 439
TasI	AATT	4 cut(s)	10, 184, 431, 515
TauI	GCSGC	4 cut(s)	132, 144, 147, 213
Tru1I	TTAA	1 cut(s)	512
Tru9I	TTAA	1 cut(s)	512
TscAI	CASTG	2 cut(s)	260, 430
TseFI	GTSAC	2 cut(s)	156, 223
TseI	GCWGC	2 cut(s)	416, 419
Tsp45I	GTSAC	2 cut(s)	156, 223
TspDTI	ATGAA	2 cut(s)	4, 43
TspRI	CASTG	2 cut(s)	260, 430
Tth111I	GACNNNGTC	2 cut(s)	203, 221
XceI	RCATGY	1 cut(s)	539
XmiI	GTMKAC	1 cut(s)	216
XspI	CTAG	2 cut(s)	35, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.