AT3G62070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010914
Physical Location & Seq
Reverse (-)
22983517 .. 22984566
1050 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G62070.1

Sequence Viewer

Length: 687 bp
ATGGCGTTCGAAGAGAGCTTAGTAATGGTTTCTTCTTTGTCGAGATTGTCTATATGTACGAGCTCTGCTTACGACGAAGCAGCCACGAAGAATCAACCAGATTCGTGTGTTTCCACATCTCTGGAGAATTTCGACGGAGCAGAGGCGGATGGGGAAGTTTCCGATGATGGAGAAGGAAAAGAGAACGTTCGAGAGTCAGATTCCGACAAAGAGACACGTGGGTTTTACTCTCTTCCGGTGACTCCATCTCGCCGGAGAAGAAAACTTACAGTTTCCGGCGAGTTAGATGCGAATGAGAGTAACAAAAATGGCAGTAAGTGTAGTTTACGGAGGCAAAGGAGGGAAAAGAAGAAAAAGGGAGTTAACGGAGAGTGTGACGTCGGTGGAAGAGAAGGCTTAACGGTGTTGACGAGAGCAAGAGGTGGAGATAGGTCGTTGAGGATGGGGTTACAAGAAGTGAAAGCTTGTAGAGATCTCGGGTTCGAATTAGAGGTTCCGGTTCCGGGTCGGATATCTGTGTCAACAACCGGGTCGAATTTCGATACTCAGACTAGTAGCGGCGGCGACTCACCCATCGCCACCTGGCGTATCTCCAGTCCTGGTGATGATCCAAAGGAGGTCAAGGCGAGGTTGAAAGTGTGGGCACAAGCGGTAGCTTTAGCTTCTGCGACACGTCAAGCTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

24.57

Weight (kDa)

6.46

Isoelectric Point (pI)

53.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010914)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46940 AT3G62070 AT4G01670
fragaria_vesca FvH4_1g26130
malus_domestica MD00G1137300.v1.1
prunus_persica Prupe.3G001400_v2.0.a1
pyrus_communis pycom03g07920
rosa_chinensis RchiOBHm_Chr3g0485631
rosa_laevigata RLG00000023140
rosa_multiflora Rmu_sc0001272.1_g000004 Rmu_sc0004711.1_g000006 Rmu_sc0036906.1_g000001
rosa_roxburghii Rroxscaffold_6G00396570 Rroxscaffold_6G00396880
rosa_rugosa Rorug03G0220300
rosa_samantha Rh3AG269000 Rh3BG304600 Rh3CG303200 Rh3DG299500
rosa_wichuraiana Rw3G023990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 381
AciI CCGC 4 cut(s) 146, 558, 561, 650
AclI AACGTT 1 cut(s) 186
AclWI GGATC 1 cut(s) 602
AcsI RAATTY 2 cut(s) 127, 535
AcvI CACGTG 1 cut(s) 218
AcyI GRCGYC 1 cut(s) 378
AfaI GTAC 1 cut(s) 58
AfiI CCNNNNNNNGG 1 cut(s) 503
AflIII ACRYGT 2 cut(s) 215, 671
AgsI TTSAA 1 cut(s) 634
AhlI ACTAGT 1 cut(s) 551
AjiI CACGTC 1 cut(s) 674
AjnI CCWGG 2 cut(s) 581, 598
AluBI AGCT 6 cut(s) 18, 63, 464, 656, 662, 680
AluI AGCT 6 cut(s) 18, 63, 464, 656, 662, 680
Alw21I GWGCWC 1 cut(s) 65
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 1 cut(s) 602
Ama87I CYCGRG 1 cut(s) 476
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 2 cut(s) 127, 535
AsuC2I CCSGG 2 cut(s) 504, 529
AsuHPI GGTGA 3 cut(s) 250, 561, 614
AsuII TTCGAA 2 cut(s) 9, 483
AvaI CYCGRG 1 cut(s) 476
BaeGI GKGCMC 1 cut(s) 646
BanII GRGCYC 1 cut(s) 65
BarI GAAGNNNNNNTAC 2 cut(s) 250, 282
BbrPI CACGTG 1 cut(s) 218
Bbv12I GWGCWC 1 cut(s) 65
BbvI GCAGC 1 cut(s) 92
BccI CCATC 5 cut(s) 143, 161, 253, 436, 581
BcgI CGANNNNNNTGC 2 cut(s) 269, 303
BciT130I CCWGG 2 cut(s) 583, 600
BcnI CCSGG 2 cut(s) 504, 529
BcoDI GTCTC 1 cut(s) 206
BcuI ACTAGT 1 cut(s) 551
BfaI CTAG 1 cut(s) 552
BglII AGATCT 1 cut(s) 472
BisI GCNGC 3 cut(s) 81, 559, 562
BlsI GCNGC 3 cut(s) 82, 560, 563
Bme1390I CCNGG 4 cut(s) 504, 529, 583, 600
BmeT110I CYCGRG 1 cut(s) 476
BmgBI CACGTC 1 cut(s) 674
BmiI GGNNCC 2 cut(s) 495, 501
BmrFI CCNGG 4 cut(s) 504, 529, 583, 600
BmsI GCATC 1 cut(s) 277
BpmI CTGGAG 2 cut(s) 143, 577
Bpu14I TTCGAA 2 cut(s) 9, 483
BpuMI CCSGG 2 cut(s) 504, 529
BsaAI YACGTR 1 cut(s) 218
BsaHI GRCGYC 1 cut(s) 378
BsaWI WCCGGW 2 cut(s) 235, 496
Bsc4I CCNNNNNNNGG 1 cut(s) 503
Bse1I ACTGG 1 cut(s) 594
BseBI CCWGG 2 cut(s) 583, 600
BseGI GGATG 2 cut(s) 154, 447
BseLI CCNNNNNNNGG 1 cut(s) 503
BseMII CTCAG 1 cut(s) 560
BseNI ACTGG 1 cut(s) 594
BseSI GKGCMC 1 cut(s) 646
BseXI GCAGC 1 cut(s) 92
BsiHKAI GWGCWC 1 cut(s) 65
BsiHKCI CYCGRG 1 cut(s) 476
BsiSI CCGG 6 cut(s) 236, 253, 276, 497, 503, 528
BslI CCNNNNNNNGG 1 cut(s) 503
BsmAI GTCTC 1 cut(s) 206
BsoBI CYCGRG 1 cut(s) 476
Bsp119I TTCGAA 2 cut(s) 9, 483
Bsp1286I GDGCHC 2 cut(s) 65, 646
Bsp143I GATC 2 cut(s) 472, 607
BspACI CCGC 4 cut(s) 146, 558, 561, 650
BspCNI CTCAG 1 cut(s) 559
BspLI GGNNCC 2 cut(s) 495, 501
BspPI GGATC 1 cut(s) 602
BspT104I TTCGAA 2 cut(s) 9, 483
BsrI ACTGG 1 cut(s) 594
BssMI GATC 2 cut(s) 472, 607
BssNI GRCGYC 1 cut(s) 378
Bst2UI CCWGG 2 cut(s) 583, 600
Bst4CI ACNGT 2 cut(s) 271, 403
Bst6I CTCTTC 3 cut(s) 6, 237, 382
BstACI GRCGYC 1 cut(s) 378
BstBAI YACGTR 1 cut(s) 218
BstBI TTCGAA 2 cut(s) 9, 483
BstDEI CTNAG 3 cut(s) 19, 546, 684
BstF5I GGATG 2 cut(s) 154, 447
BstKTI GATC 2 cut(s) 475, 610
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 2 cut(s) 472, 607
BstNI CCWGG 2 cut(s) 583, 600
BstSCI CCNGG 4 cut(s) 502, 527, 581, 598
BstSLI GKGCMC 1 cut(s) 646
BstV1I GCAGC 1 cut(s) 92
BstX2I RGATCY 1 cut(s) 472
BstXI CCANNNNNNTGG 1 cut(s) 121
BstYI RGATCY 1 cut(s) 472
BtgZI GCGATG 1 cut(s) 559
BtrI CACGTC 1 cut(s) 674
BtsCI GGATG 2 cut(s) 154, 447
Csp6I GTAC 1 cut(s) 57
CviJI RGCY 8 cut(s) 18, 63, 83, 396, 464, 656, 662, 680
CviKI_1 RGCY 8 cut(s) 18, 63, 83, 396, 464, 656, 662, 680
CviQI GTAC 1 cut(s) 57
DdeI CTNAG 3 cut(s) 19, 546, 684
DpnI GATC 2 cut(s) 474, 609
DpnII GATC 2 cut(s) 472, 607
Eam1104I CTCTTC 3 cut(s) 6, 237, 382
EarI CTCTTC 3 cut(s) 6, 237, 382
EciI GGCGGA 1 cut(s) 161
Ecl136II GAGCTC 1 cut(s) 63
Eco24I GRGCYC 1 cut(s) 65
Eco32I GATATC 1 cut(s) 513
Eco53kI GAGCTC 1 cut(s) 63
Eco72I CACGTG 1 cut(s) 218
Eco88I CYCGRG 1 cut(s) 476
EcoICRI GAGCTC 1 cut(s) 63
EcoRII CCWGG 2 cut(s) 581, 598
EcoRV GATATC 1 cut(s) 513
EcoT38I GRGCYC 1 cut(s) 65
FaiI YATR 2 cut(s) 53, 55
Fnu4HI GCNGC 3 cut(s) 81, 559, 562
FokI GGATG 2 cut(s) 161, 454
FriOI GRGCYC 1 cut(s) 65
Fsp4HI GCNGC 3 cut(s) 81, 559, 562
FspBI CTAG 1 cut(s) 552
GluI GCNGC 3 cut(s) 81, 559, 562
GsuI CTGGAG 2 cut(s) 143, 577
HapII CCGG 6 cut(s) 236, 253, 276, 497, 503, 528
Hin1I GRCGYC 1 cut(s) 378
HincII GTYRAC 3 cut(s) 364, 408, 522
HindII GTYRAC 3 cut(s) 364, 408, 522
HindIII AAGCTT 2 cut(s) 462, 678
HinfI GANTC 6 cut(s) 91, 101, 194, 200, 241, 566
HpaI GTTAAC 1 cut(s) 364
HpaII CCGG 6 cut(s) 236, 253, 276, 497, 503, 528
HphI GGTGA 3 cut(s) 250, 561, 614
Hpy166II GTNNAC 4 cut(s) 326, 364, 408, 522
Hpy188I TCNGA 5 cut(s) 163, 199, 205, 510, 549
Hpy188III TCNNGA 3 cut(s) 42, 122, 191
Hpy8I GTNNAC 4 cut(s) 326, 364, 408, 522
Hpy99I CGWCG 3 cut(s) 77, 137, 383
HpyAV CCTTC 2 cut(s) 167, 386
HpyCH4III ACNGT 2 cut(s) 271, 403
HpyCH4IV ACGT 4 cut(s) 186, 217, 378, 673
HpyF3I CTNAG 3 cut(s) 19, 546, 684
HpySE526I ACGT 4 cut(s) 186, 217, 378, 673
Hsp92I GRCGYC 1 cut(s) 378
KspAI GTTAAC 1 cut(s) 364
Kzo9I GATC 2 cut(s) 472, 607
LmnI GCTCC 1 cut(s) 137
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 1 cut(s) 277
MaeI CTAG 1 cut(s) 552
MaeII ACGT 4 cut(s) 186, 217, 378, 673
MaeIII GTNAC 4 cut(s) 238, 299, 374, 447
MalI GATC 2 cut(s) 474, 609
MboI GATC 2 cut(s) 472, 607
MboII GAAGA 7 cut(s) 23, 24, 100, 224, 270, 361, 399
MflI RGATCY 1 cut(s) 472
MhlI GDGCHC 2 cut(s) 65, 646
MluCI AATT 3 cut(s) 127, 485, 535
MlyI GAGTC 3 cut(s) 203, 235, 560
MmeI TCCRAC 2 cut(s) 228, 488
MnlI CCTC 8 cut(s) 136, 324, 333, 413, 432, 484, 610, 621
MseI TTAA 2 cut(s) 363, 398
MspI CCGG 6 cut(s) 236, 253, 276, 497, 503, 528
MspR9I CCNGG 4 cut(s) 504, 529, 583, 600
MvaI CCWGG 2 cut(s) 583, 600
NciI CCSGG 2 cut(s) 504, 529
NdeII GATC 2 cut(s) 472, 607
NlaIV GGNNCC 2 cut(s) 495, 501
NmuCI GTSAC 2 cut(s) 238, 374
NspV TTCGAA 2 cut(s) 9, 483
PcsI WCGNNNNNNNCGW 1 cut(s) 407
PfeI GAWTC 3 cut(s) 91, 101, 200
PkrI GCNGC 3 cut(s) 82, 560, 563
PleI GAGTC 3 cut(s) 202, 235, 560
PmaCI CACGTG 1 cut(s) 218
PmlI CACGTG 1 cut(s) 218
PpsI GAGTC 3 cut(s) 202, 235, 560
Ppu21I YACGTR 1 cut(s) 218
Psp124BI GAGCTC 1 cut(s) 65
Psp1406I AACGTT 1 cut(s) 186
Psp6I CCWGG 2 cut(s) 581, 598
PspCI CACGTG 1 cut(s) 218
PspGI CCWGG 2 cut(s) 581, 598
PspN4I GGNNCC 2 cut(s) 495, 501
PsuI RGATCY 1 cut(s) 472
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
SacI GAGCTC 1 cut(s) 65
SaqAI TTAA 2 cut(s) 363, 398
SatI GCNGC 3 cut(s) 81, 559, 562
Sau3AI GATC 2 cut(s) 472, 607
SchI GAGTC 3 cut(s) 203, 235, 560
ScrFI CCNGG 4 cut(s) 504, 529, 583, 600
SduI GDGCHC 2 cut(s) 65, 646
SfaNI GCATC 1 cut(s) 277
SfuI TTCGAA 2 cut(s) 9, 483
SpeI ACTAGT 1 cut(s) 551
Sse9I AATT 3 cut(s) 127, 485, 535
SsiI CCGC 4 cut(s) 146, 558, 561, 650
SspMI CTAG 1 cut(s) 552
SstI GAGCTC 1 cut(s) 65
StyD4I CCNGG 4 cut(s) 502, 527, 581, 598
TaaI ACNGT 2 cut(s) 271, 403
TaiI ACGT 4 cut(s) 189, 220, 381, 676
TaqI TCGA 7 cut(s) 9, 41, 132, 190, 483, 533, 540
TasI AATT 3 cut(s) 127, 485, 535
TauI GCSGC 2 cut(s) 561, 564
TfiI GAWTC 3 cut(s) 91, 101, 200
Tru1I TTAA 2 cut(s) 363, 398
Tru9I TTAA 2 cut(s) 363, 398
TseFI GTSAC 2 cut(s) 238, 374
TseI GCWGC 1 cut(s) 80
Tsp45I GTSAC 2 cut(s) 238, 374
TspGWI ACGGA 3 cut(s) 150, 343, 381
XapI RAATTY 2 cut(s) 127, 535
XspI CTAG 1 cut(s) 552
ZraI GACGTC 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.