Rh3DG299500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0010914
Physical Location & Seq
Reverse (-)
31449560 .. 31451932
2373 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG299500.1

Sequence Viewer

Length: 1077 bp
ATGGCGTCAGATGAGAGTATGACCCTCAGGTCTTGTATCTCTATGCAGGAAGGTGAGTACGACGATTATACGGACGAAGGGTATGATCAGGATCAGCCTCATCAGCACTTGTCTAGGTTGTCCATGTGTACCAGCAATTCCATCTATGGTGATGACCAGATGAATGATGATGGTGGCAATGTCAATTCCATCTACTACCAAGGCCAGCAAGAGAATGGTATGAGCTTGTACATGTCACTCTTGTCTATAGACAGCTTTGATGGGGATGGAGATGTTGATGAAGAAGAGGAATCATCCAACAAGAAGCGGCTCAGTTCTCAGCTGGTACTCGCAGCTGGGATGTCAACGGATGACGATTCCGACACGGAACCGGCCTGTTTCTCCCTTCCGGCGACACCCCCTAGGCTGAGGAGGGATCTGCCTGGTGCTCGTGGTGCAGGGAGCATTCTTATTAACAAGGTGCATCCCTATTCTAGGGTGGACAAAGAGTATGCGAGCGAAAATGAAGCTCAGAAGGCCTTGAGTGATGACTGCAGGAGGAGCAGGAGGAGGAGTAGGAGGAGAATGATGAGGAACAGATCATCATGGCTATCACCATCACCATTCCACCACGGAGCTAAGACGACACCGGACAGTGATGATGATGGAGAAGATGAGGACAAGGAGGAGGAGGAGGAGGAGGAAGAGAGCACGTATATGAATGTGTGTGGTGATCATTGCCACAGCTTCAGCGGAGAGAGCGAGGGTACGGGGATGGTGGTGATAGCAAGGCCCAAAGGAGGGAACAGGTCCCTCTGCATGGACATGGAGGAAGTCAAGGCTTGCAAAGACCTCGGCTTCGAGTTGGAGCACGACCGCATACTGCAGCAGCAGCAGGAGATGATCCCTTCTCGGCTTTCTCTATCCTCCACCACCCTCGACACTAACTACACCACCAGCAGCGGTGGCACTTCCCCTATTGCCAACTGGCCCATTTCCAGTCCCGGGGACCATCCGCAGGAGGTCAAGGCTCGCCTCAAGGCCTGGGCGCAGGCAGTGGCTCTGGCATCTGCACCACCCACAAGGCACTCGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

358

Amino Acids

39.74

Weight (kDa)

4.61

Isoelectric Point (pI)

79.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010914)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46940 AT3G62070 AT4G01670
fragaria_vesca FvH4_1g26130
malus_domestica MD00G1137300.v1.1
prunus_persica Prupe.3G001400_v2.0.a1
pyrus_communis pycom03g07920
rosa_chinensis RchiOBHm_Chr3g0485631
rosa_laevigata RLG00000023140
rosa_multiflora Rmu_sc0001272.1_g000004 Rmu_sc0004711.1_g000006 Rmu_sc0036906.1_g000001
rosa_roxburghii Rroxscaffold_6G00396570 Rroxscaffold_6G00396880
rosa_rugosa Rorug03G0220300
rosa_samantha Rh3AG269000 Rh3BG304600 Rh3CG303200 Rh3DG299500
rosa_wichuraiana Rw3G023990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 28
AciI CCGC 5 cut(s) 307, 732, 856, 942, 995
AclWI GGATC 3 cut(s) 99, 423, 877
AcuI CTGAAG 1 cut(s) 712
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 5 cut(s) 59, 130, 230, 327, 748
AfiI CCNNNNNNNGG 6 cut(s) 474, 779, 780, 799, 984, 997
AflIII ACRYGT 1 cut(s) 231
AjnI CCWGG 2 cut(s) 421, 1022
AluBI AGCT 8 cut(s) 225, 255, 322, 335, 509, 617, 726, 1074
AluI AGCT 8 cut(s) 225, 255, 322, 335, 509, 617, 726, 1074
Alw21I GWGCWC 3 cut(s) 430, 692, 852
AlwI GGATC 3 cut(s) 99, 423, 877
Ama87I CYCGRG 2 cut(s) 983, 1069
AoxI GGCC 6 cut(s) 202, 372, 516, 770, 968, 1020
ApeKI GCWGC 5 cut(s) 332, 865, 868, 871, 939
ArsI GACNNNNNNTTYG 2 cut(s) 821, 853
AspA2I CCTAGG 1 cut(s) 401
AspLEI GCGC 1 cut(s) 1030
AspS9I GGNCC 4 cut(s) 771, 789, 969, 988
AsuC2I CCSGG 2 cut(s) 984, 985
AsuHPI GGTGA 6 cut(s) 65, 161, 585, 591, 722, 772
AvaI CYCGRG 2 cut(s) 983, 1069
AvaII GGWCC 2 cut(s) 789, 988
AvrII CCTAGG 1 cut(s) 401
AxyI CCTNAGG 1 cut(s) 26
BauI CACGAG 1 cut(s) 429
Bbv12I GWGCWC 3 cut(s) 430, 692, 852
BbvCI CCTCAGC 1 cut(s) 407
BbvI GCAGC 5 cut(s) 344, 877, 880, 883, 951
BccI CCATC 9 cut(s) 149, 164, 197, 254, 260, 604, 638, 748, 999
BcgI CGANNNNNNTGC 2 cut(s) 814, 848
BciT130I CCWGG 2 cut(s) 423, 1024
BclI TGATCA 2 cut(s) 85, 712
BcnI CCSGG 2 cut(s) 984, 985
BfaI CTAG 3 cut(s) 114, 402, 474
BfmI CTRYAG 3 cut(s) 246, 532, 863
BisI GCNGC 6 cut(s) 308, 333, 866, 869, 872, 940
BlnI CCTAGG 1 cut(s) 401
BlsI GCNGC 6 cut(s) 309, 334, 867, 870, 873, 941
Bme1390I CCNGG 4 cut(s) 423, 984, 985, 1024
Bme18I GGWCC 2 cut(s) 789, 988
BmeT110I CYCGRG 2 cut(s) 983, 1069
BmgT120I GGNCC 4 cut(s) 771, 789, 969, 988
BmiI GGNNCC 3 cut(s) 369, 791, 989
BmrFI CCNGG 4 cut(s) 423, 984, 985, 1024
BmsI GCATC 2 cut(s) 472, 1055
Bpu10I CCTNAGC 1 cut(s) 407
BpuEI CTTGAG 2 cut(s) 541, 1001
BpuMI CCSGG 2 cut(s) 984, 985
BsaAI YACGTR 1 cut(s) 693
BsaBI GATNNNNATC 1 cut(s) 90
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 7 cut(s) 199, 401, 610, 832, 983, 984, 1023
BsaWI WCCGGW 1 cut(s) 628
BsaXI ACNNNNNCTCC 2 cut(s) 538, 568
Bsc4I CCNNNNNNNGG 6 cut(s) 474, 779, 780, 799, 984, 997
Bse118I RCCGGY 1 cut(s) 370
Bse1I ACTGG 2 cut(s) 971, 978
Bse21I CCTNAGG 1 cut(s) 26
Bse3DI GCAATG 2 cut(s) 184, 715
Bse8I GATNNNNATC 1 cut(s) 90
BseBI CCWGG 2 cut(s) 423, 1024
BseDI CCNNGG 7 cut(s) 199, 401, 610, 832, 983, 984, 1023
BseGI GGATG 7 cut(s) 271, 293, 345, 355, 463, 759, 991
BseJI GATNNNNATC 1 cut(s) 90
BseLI CCNNNNNNNGG 6 cut(s) 474, 779, 780, 799, 984, 997
BseMI GCAATG 2 cut(s) 184, 715
BseMII CTCAG 5 cut(s) 40, 325, 332, 398, 524
BseNI ACTGG 2 cut(s) 971, 978
BseXI GCAGC 5 cut(s) 344, 877, 880, 883, 951
BseYI CCCAGC 1 cut(s) 335
BsgI GTGCAG 2 cut(s) 456, 1035
Bsh1285I CGRYCG 1 cut(s) 856
BshFI GGCC 6 cut(s) 204, 374, 518, 772, 970, 1022
BsiEI CGRYCG 1 cut(s) 856
BsiHKAI GWGCWC 3 cut(s) 430, 692, 852
BsiHKCI CYCGRG 2 cut(s) 983, 1069
BsiSI CCGG 4 cut(s) 371, 389, 629, 984
BslFI GGGAC 3 cut(s) 775, 966, 1001
BslI CCNNNNNNNGG 6 cut(s) 474, 779, 780, 799, 984, 997
BsmFI GGGAC 3 cut(s) 775, 966, 1001
BsmI GAATGC 1 cut(s) 444
BsnI GGCC 6 cut(s) 204, 374, 518, 772, 970, 1022
BsoBI CYCGRG 2 cut(s) 983, 1069
Bsp1286I GDGCHC 3 cut(s) 430, 692, 852
Bsp1407I TGTACA 1 cut(s) 228
Bsp143I GATC 6 cut(s) 85, 91, 415, 578, 712, 882
BspACI CCGC 5 cut(s) 307, 732, 856, 942, 995
BspANI GGCC 6 cut(s) 204, 374, 518, 772, 970, 1022
BspCNI CTCAG 5 cut(s) 39, 324, 331, 399, 523
BspLI GGNNCC 3 cut(s) 369, 791, 989
BspMAI CTGCAG 2 cut(s) 536, 867
BspPI GGATC 3 cut(s) 99, 423, 877
BsrDI GCAATG 2 cut(s) 184, 715
BsrFI RCCGGY 1 cut(s) 370
BsrGI TGTACA 1 cut(s) 228
BsrI ACTGG 2 cut(s) 971, 978
BssAI RCCGGY 1 cut(s) 370
BssECI CCNNGG 7 cut(s) 199, 401, 610, 832, 983, 984, 1023
BssMI GATC 6 cut(s) 85, 91, 415, 578, 712, 882
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 429
BssT1I CCWWGG 2 cut(s) 199, 401
Bst2BI CACGAG 1 cut(s) 429
Bst2UI CCWGG 2 cut(s) 423, 1024
Bst4CI ACNGT 1 cut(s) 635
Bst6I CTCTTC 2 cut(s) 279, 678
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 228
BstBAI YACGTR 1 cut(s) 693
BstC8I GCNNGC 5 cut(s) 206, 496, 823, 1012, 1032
BstDEI CTNAG 6 cut(s) 26, 311, 318, 407, 510, 618
BstDSI CCRYGG 1 cut(s) 610
BstENI CCTNNNNNAGG 1 cut(s) 472
BstF5I GGATG 7 cut(s) 271, 293, 345, 355, 463, 759, 991
BstHHI GCGC 1 cut(s) 1030
BstKTI GATC 6 cut(s) 88, 94, 418, 581, 715, 885
BstMBI GATC 6 cut(s) 85, 91, 415, 578, 712, 882
BstMCI CGRYCG 1 cut(s) 856
BstMWI GCNNNNNNNGC 7 cut(s) 103, 434, 515, 540, 738, 871, 945
BstNI CCWGG 2 cut(s) 423, 1024
BstNSI RCATGY 1 cut(s) 235
BstSCI CCNGG 4 cut(s) 421, 982, 983, 1022
BstSFI CTRYAG 3 cut(s) 246, 532, 863
BstV1I GCAGC 5 cut(s) 344, 877, 880, 883, 951
BstX2I RGATCY 1 cut(s) 415
BstYI RGATCY 1 cut(s) 415
Bsu36I CCTNAGG 1 cut(s) 26
BsuRI GGCC 6 cut(s) 204, 374, 518, 772, 970, 1022
BtgI CCRYGG 1 cut(s) 610
BtsCI GGATG 7 cut(s) 271, 293, 345, 355, 463, 759, 991
BtsI GCAGTG 1 cut(s) 1041
BtsIMutI CAGTG 2 cut(s) 640, 1041
Cac8I GCNNGC 5 cut(s) 206, 496, 823, 1012, 1032
CfoI GCGC 1 cut(s) 1030
Cfr10I RCCGGY 1 cut(s) 370
Cfr13I GGNCC 4 cut(s) 771, 789, 969, 988
Cfr9I CCCGGG 1 cut(s) 983
Csp6I GTAC 5 cut(s) 58, 129, 229, 326, 747
CviAII CATG 5 cut(s) 124, 232, 585, 799, 805
CviQI GTAC 5 cut(s) 58, 129, 229, 326, 747
DdeI CTNAG 6 cut(s) 26, 311, 318, 407, 510, 618
DpnI GATC 6 cut(s) 87, 93, 417, 580, 714, 884
DpnII GATC 6 cut(s) 85, 91, 415, 578, 712, 882
DrdI GACNNNNNNGTC 1 cut(s) 28
DseDI GACNNNNNNGTC 1 cut(s) 28
Eam1104I CTCTTC 2 cut(s) 279, 678
EarI CTCTTC 2 cut(s) 279, 678
Eco130I CCWWGG 2 cut(s) 199, 401
Eco147I AGGCCT 2 cut(s) 518, 1022
Eco47I GGWCC 2 cut(s) 789, 988
Eco57I CTGAAG 1 cut(s) 712
Eco81I CCTNAGG 1 cut(s) 26
Eco88I CYCGRG 2 cut(s) 983, 1069
EcoNI CCTNNNNNAGG 1 cut(s) 472
EcoO109I RGGNCCY 1 cut(s) 789
EcoRII CCWGG 2 cut(s) 421, 1022
EcoT14I CCWWGG 2 cut(s) 199, 401
ErhI CCWWGG 2 cut(s) 199, 401
FaeI CATG 5 cut(s) 127, 235, 588, 802, 808
FaqI GGGAC 3 cut(s) 775, 966, 1001
FatI CATG 5 cut(s) 123, 231, 584, 798, 804
FbaI TGATCA 2 cut(s) 85, 712
Fnu4HI GCNGC 6 cut(s) 308, 333, 866, 869, 872, 940
FokI GGATG 7 cut(s) 278, 280, 352, 362, 450, 766, 978
Fsp4HI GCNGC 6 cut(s) 308, 333, 866, 869, 872, 940
FspBI CTAG 3 cut(s) 114, 402, 474
GlaI GCGC 1 cut(s) 1029
GluI GCNGC 6 cut(s) 308, 333, 866, 869, 872, 940
GsaI CCCAGC 1 cut(s) 339
HaeIII GGCC 6 cut(s) 204, 374, 518, 772, 970, 1022
HapII CCGG 4 cut(s) 371, 389, 629, 984
HhaI GCGC 1 cut(s) 1030
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 5 cut(s) 127, 235, 588, 802, 808
Hin6I GCGC 1 cut(s) 1028
HinP1I GCGC 1 cut(s) 1028
HincII GTYRAC 1 cut(s) 345
HindII GTYRAC 1 cut(s) 345
HinfI GANTC 2 cut(s) 290, 356
HpaII CCGG 4 cut(s) 371, 389, 629, 984
HphI GGTGA 6 cut(s) 65, 161, 585, 591, 722, 772
Hpy166II GTNNAC 3 cut(s) 129, 345, 481
Hpy188I TCNGA 3 cut(s) 10, 361, 513
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 3 cut(s) 129, 345, 481
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 5 cut(s) 44, 71, 395, 508, 897
HpyCH4III ACNGT 1 cut(s) 635
HpyCH4IV ACGT 1 cut(s) 692
HpyCH4V TGCA 8 cut(s) 46, 437, 463, 534, 798, 825, 865, 1052
HpyF10VI GCNNNNNNNGC 7 cut(s) 103, 434, 515, 540, 738, 871, 945
HpyF3I CTNAG 6 cut(s) 26, 311, 318, 407, 510, 618
HpySE526I ACGT 1 cut(s) 692
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 5 cut(s) 127, 235, 588, 802, 808
HspAI GCGC 1 cut(s) 1028
Ksp22I TGATCA 2 cut(s) 85, 712
Kzo9I GATC 6 cut(s) 85, 91, 415, 578, 712, 882
LmnI GCTCC 4 cut(s) 441, 540, 614, 847
Lsp1109I GCAGC 5 cut(s) 344, 877, 880, 883, 951
LweI GCATC 2 cut(s) 472, 1055
MaeI CTAG 3 cut(s) 114, 402, 474
MaeII ACGT 1 cut(s) 692
MaeIII GTNAC 1 cut(s) 234
MalI GATC 6 cut(s) 87, 93, 417, 580, 714, 884
MboI GATC 6 cut(s) 85, 91, 415, 578, 712, 882
MboII GAAGA 4 cut(s) 293, 296, 662, 695
MflI RGATCY 1 cut(s) 415
MhlI GDGCHC 3 cut(s) 430, 692, 852
MluCI AATT 2 cut(s) 136, 184
MmeI TCCRAC 3 cut(s) 321, 384, 825
MseI TTAA 1 cut(s) 453
MslI CAYNNNNRTG 2 cut(s) 695, 803
MspA1I CMGCKG 4 cut(s) 322, 335, 732, 942
MspI CCGG 4 cut(s) 371, 389, 629, 984
MspR9I CCNGG 4 cut(s) 423, 984, 985, 1024
Mva1269I GAATGC 1 cut(s) 444
MvaI CCWGG 2 cut(s) 423, 1024
MwoI GCNNNNNNNGC 7 cut(s) 103, 434, 515, 540, 738, 871, 945
NciI CCSGG 2 cut(s) 984, 985
NdeII GATC 6 cut(s) 85, 91, 415, 578, 712, 882
NlaIII CATG 5 cut(s) 127, 235, 588, 802, 808
NlaIV GGNNCC 3 cut(s) 369, 791, 989
NmeAIII GCCGAG 2 cut(s) 813, 871
NmuCI GTSAC 1 cut(s) 234
NspI RCATGY 1 cut(s) 235
PaeR7I CTCGAG 1 cut(s) 1069
PceI AGGCCT 2 cut(s) 518, 1022
PciI ACATGT 1 cut(s) 231
PctI GAATGC 1 cut(s) 444
PfeI GAWTC 2 cut(s) 290, 356
PkrI GCNGC 6 cut(s) 309, 334, 867, 870, 873, 941
Ppu21I YACGTR 1 cut(s) 693
PpuMI RGGWCCY 1 cut(s) 789
PscI ACATGT 1 cut(s) 231
Psp5II RGGWCCY 1 cut(s) 789
Psp6I CCWGG 2 cut(s) 421, 1022
PspFI CCCAGC 1 cut(s) 335
PspGI CCWGG 2 cut(s) 421, 1022
PspN4I GGNNCC 3 cut(s) 369, 791, 989
PspPI GGNCC 4 cut(s) 771, 789, 969, 988
PspPPI RGGWCCY 1 cut(s) 789
PspXI VCTCGAGB 1 cut(s) 1069
PstI CTGCAG 2 cut(s) 536, 867
PsuI RGATCY 1 cut(s) 415
PvuII CAGCTG 2 cut(s) 322, 335
RsaI GTAC 5 cut(s) 59, 130, 230, 327, 748
RsaNI GTAC 5 cut(s) 58, 129, 229, 326, 747
RseI CAYNNNNRTG 2 cut(s) 695, 803
SaqAI TTAA 1 cut(s) 453
SatI GCNGC 6 cut(s) 308, 333, 866, 869, 872, 940
Sau3AI GATC 6 cut(s) 85, 91, 415, 578, 712, 882
Sau96I GGNCC 4 cut(s) 771, 789, 969, 988
ScrFI CCNGG 4 cut(s) 423, 984, 985, 1024
SduI GDGCHC 3 cut(s) 430, 692, 852
SfaNI GCATC 2 cut(s) 472, 1055
SfcI CTRYAG 3 cut(s) 246, 532, 863
Sfr274I CTCGAG 1 cut(s) 1069
SinI GGWCC 2 cut(s) 789, 988
SlaI CTCGAG 1 cut(s) 1069
SmaI CCCGGG 1 cut(s) 985
SmiMI CAYNNNNRTG 2 cut(s) 695, 803
SmlI CTYRAG 3 cut(s) 520, 1016, 1069
SmoI CTYRAG 3 cut(s) 520, 1016, 1069
Sse9I AATT 2 cut(s) 136, 184
SseBI AGGCCT 2 cut(s) 518, 1022
SsiI CCGC 5 cut(s) 307, 732, 856, 942, 995
SspMI CTAG 3 cut(s) 114, 402, 474
StuI AGGCCT 2 cut(s) 518, 1022
StyD4I CCNGG 4 cut(s) 421, 982, 983, 1022
StyI CCWWGG 2 cut(s) 199, 401
TaaI ACNGT 1 cut(s) 635
TaiI ACGT 1 cut(s) 695
TaqI TCGA 3 cut(s) 840, 918, 1070
TasI AATT 2 cut(s) 136, 184
TatI WGTACW 1 cut(s) 228
TauI GCSGC 1 cut(s) 310
TfiI GAWTC 2 cut(s) 290, 356
Tru1I TTAA 1 cut(s) 453
Tru9I TTAA 1 cut(s) 453
TscAI CASTG 2 cut(s) 640, 1041
TseFI GTSAC 1 cut(s) 234
TseI GCWGC 5 cut(s) 332, 865, 868, 871, 939
Tsp45I GTSAC 1 cut(s) 234
TspDTI ATGAA 4 cut(s) 176, 294, 519, 713
TspGWI ACGGA 4 cut(s) 86, 362, 380, 627
TspMI CCCGGG 1 cut(s) 983
TspRI CASTG 2 cut(s) 640, 1041
VpaK11BI GGWCC 2 cut(s) 789, 988
XagI CCTNNNNNAGG 1 cut(s) 472
XceI RCATGY 1 cut(s) 235
XcmI CCANNNNNNNNNTGG 1 cut(s) 212
XhoI CTCGAG 1 cut(s) 1069
XmaI CCCGGG 1 cut(s) 983
XmaJI CCTAGG 1 cut(s) 401
XspI CTAG 3 cut(s) 114, 402, 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.