Rmu_sc0001272.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001272.1
OG0010914
Physical Location & Seq
Forward (+)
17319 .. 18522
1204 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001272.1_g000004.1.cds

Sequence Viewer

Length: 1041 bp
atgcaggaaggtgagtacgacgattatacggacgaagggtatgatcaggatcagcctcatcagcacttgtctaggttgtccatgtgtaccagcaattccatctatggtgatgaccagatgaatgatgatggtggcaatgtcaattccatctactaccaaggccagcaagagaatggtatgagcttgtacatgtcactcttgtctatagacagctttgatggggatggagatgttgatgaagaagaggaatcatccaacaagaagcggctcagttctcagctggtactcgcagctgggatgtcaacggatgacgattccgacacggaaccggcctgtttctcccttccggcgacaccccctaggctgaggagggatctgcctggtgctcgtggtgcagggagcattcttattaacaaggtgcatccctattctagggtggacaaagagtatgcgagcgaaaatgaagctcagaaggtcttgagtgatgactgcaggaggagcaggaggaggagtaggaggagaatgatgaggaacagatcatcatggctatcaccatcaccattccaccacggagctaagacgacaccggacagtgatgatgatggagaagatgaggacaaggaggaggaggaggaggaggaggaggaagagagcacgtatatgaatgtctgtggtgatcattgccacagcttcagcggagagagcgagggtacggggatggtggtgatagcaaggcccaaaggagggaacaggtccctctgcatggacatggaggaagtcaaggcttgcaaagacctcggcttcgagttggagcacgaccgcatactgcagcagcagcaggagatgatcccttctcggctttctctatccgccaccaccctcgacactaactacaccaccagcagcggtggcaattcccctattgccaactggcccatttccagtcccggggaccatccgcaggaggtcaaggctcgcctcaaggcctgggcgcaggcagtggctctggcatctgcaccacccacaaggcactcgagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

346

Amino Acids

38.51

Weight (kDa)

4.58

Isoelectric Point (pI)

78.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010914)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46940 AT3G62070 AT4G01670
fragaria_vesca FvH4_1g26130
malus_domestica MD00G1137300.v1.1
prunus_persica Prupe.3G001400_v2.0.a1
pyrus_communis pycom03g07920
rosa_chinensis RchiOBHm_Chr3g0485631
rosa_laevigata RLG00000023140
rosa_multiflora Rmu_sc0001272.1_g000004 Rmu_sc0004711.1_g000006 Rmu_sc0036906.1_g000001
rosa_roxburghii Rroxscaffold_6G00396570 Rroxscaffold_6G00396880
rosa_rugosa Rorug03G0220300
rosa_samantha Rh3AG269000 Rh3BG304600 Rh3CG303200 Rh3DG299500
rosa_wichuraiana Rw3G023990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 265, 696, 820, 870, 906, 959
AclWI GGATC 3 cut(s) 57, 381, 841
AcuI CTGAAG 1 cut(s) 676
AfaI GTAC 5 cut(s) 17, 88, 188, 285, 712
AfiI CCNNNNNNNGG 6 cut(s) 432, 743, 744, 763, 948, 961
AflIII ACRYGT 1 cut(s) 189
AjnI CCWGG 2 cut(s) 379, 986
AluBI AGCT 7 cut(s) 183, 213, 280, 293, 467, 575, 690
AluI AGCT 7 cut(s) 183, 213, 280, 293, 467, 575, 690
Alw21I GWGCWC 3 cut(s) 388, 656, 816
AlwI GGATC 3 cut(s) 57, 381, 841
Ama87I CYCGRG 2 cut(s) 947, 1033
AoxI GGCC 5 cut(s) 160, 330, 734, 932, 984
ApeKI GCWGC 5 cut(s) 290, 829, 832, 835, 903
ArsI GACNNNNNNTTYG 2 cut(s) 785, 817
AspA2I CCTAGG 1 cut(s) 359
AspLEI GCGC 1 cut(s) 994
AspS9I GGNCC 4 cut(s) 735, 753, 933, 952
AsuC2I CCSGG 2 cut(s) 948, 949
AsuHPI GGTGA 6 cut(s) 23, 119, 543, 549, 686, 736
AvaI CYCGRG 2 cut(s) 947, 1033
AvaII GGWCC 2 cut(s) 753, 952
AvrII CCTAGG 1 cut(s) 359
BauI CACGAG 1 cut(s) 387
Bbv12I GWGCWC 3 cut(s) 388, 656, 816
BbvCI CCTCAGC 1 cut(s) 365
BbvI GCAGC 5 cut(s) 302, 841, 844, 847, 915
BccI CCATC 9 cut(s) 107, 122, 155, 212, 218, 562, 596, 712, 963
BcgI CGANNNNNNTGC 2 cut(s) 778, 812
BciT130I CCWGG 2 cut(s) 381, 988
BclI TGATCA 2 cut(s) 43, 676
BcnI CCSGG 2 cut(s) 948, 949
BfaI CTAG 3 cut(s) 72, 360, 432
BfmI CTRYAG 3 cut(s) 204, 490, 827
BisI GCNGC 6 cut(s) 266, 291, 830, 833, 836, 904
BlnI CCTAGG 1 cut(s) 359
BlsI GCNGC 6 cut(s) 267, 292, 831, 834, 837, 905
Bme1390I CCNGG 4 cut(s) 381, 948, 949, 988
Bme18I GGWCC 2 cut(s) 753, 952
BmeT110I CYCGRG 2 cut(s) 947, 1033
BmgT120I GGNCC 4 cut(s) 735, 753, 933, 952
BmiI GGNNCC 3 cut(s) 327, 755, 953
BmrFI CCNGG 4 cut(s) 381, 948, 949, 988
BmsI GCATC 2 cut(s) 430, 1019
Bpu10I CCTNAGC 1 cut(s) 365
BpuEI CTTGAG 2 cut(s) 499, 965
BpuMI CCSGG 2 cut(s) 948, 949
BsaAI YACGTR 1 cut(s) 657
BsaBI GATNNNNATC 1 cut(s) 48
BsaJI CCNNGG 7 cut(s) 157, 359, 568, 796, 947, 948, 987
BsaWI WCCGGW 1 cut(s) 586
BsaXI ACNNNNNCTCC 2 cut(s) 496, 526
Bsc4I CCNNNNNNNGG 6 cut(s) 432, 743, 744, 763, 948, 961
Bse118I RCCGGY 1 cut(s) 328
Bse1I ACTGG 2 cut(s) 935, 942
Bse3DI GCAATG 2 cut(s) 142, 679
Bse8I GATNNNNATC 1 cut(s) 48
BseBI CCWGG 2 cut(s) 381, 988
BseDI CCNNGG 7 cut(s) 157, 359, 568, 796, 947, 948, 987
BseGI GGATG 7 cut(s) 229, 251, 303, 313, 421, 723, 955
BseJI GATNNNNATC 1 cut(s) 48
BseLI CCNNNNNNNGG 6 cut(s) 432, 743, 744, 763, 948, 961
BseMI GCAATG 2 cut(s) 142, 679
BseMII CTCAG 4 cut(s) 283, 290, 356, 482
BseNI ACTGG 2 cut(s) 935, 942
BseXI GCAGC 5 cut(s) 302, 841, 844, 847, 915
BseYI CCCAGC 1 cut(s) 293
BsgI GTGCAG 2 cut(s) 414, 999
Bsh1285I CGRYCG 1 cut(s) 820
BshFI GGCC 5 cut(s) 162, 332, 736, 934, 986
BsiEI CGRYCG 1 cut(s) 820
BsiHKAI GWGCWC 3 cut(s) 388, 656, 816
BsiHKCI CYCGRG 2 cut(s) 947, 1033
BsiSI CCGG 4 cut(s) 329, 347, 587, 948
BslFI GGGAC 3 cut(s) 739, 930, 965
BslI CCNNNNNNNGG 6 cut(s) 432, 743, 744, 763, 948, 961
BsmFI GGGAC 3 cut(s) 739, 930, 965
BsmI GAATGC 1 cut(s) 402
BsnI GGCC 5 cut(s) 162, 332, 736, 934, 986
BsoBI CYCGRG 2 cut(s) 947, 1033
Bsp1286I GDGCHC 3 cut(s) 388, 656, 816
Bsp1407I TGTACA 1 cut(s) 186
Bsp143I GATC 6 cut(s) 43, 49, 373, 536, 676, 846
BspACI CCGC 6 cut(s) 265, 696, 820, 870, 906, 959
BspANI GGCC 5 cut(s) 162, 332, 736, 934, 986
BspCNI CTCAG 4 cut(s) 282, 289, 357, 481
BspLI GGNNCC 3 cut(s) 327, 755, 953
BspMAI CTGCAG 2 cut(s) 494, 831
BspPI GGATC 3 cut(s) 57, 381, 841
BsrDI GCAATG 2 cut(s) 142, 679
BsrFI RCCGGY 1 cut(s) 328
BsrGI TGTACA 1 cut(s) 186
BsrI ACTGG 2 cut(s) 935, 942
BssAI RCCGGY 1 cut(s) 328
BssECI CCNNGG 7 cut(s) 157, 359, 568, 796, 947, 948, 987
BssMI GATC 6 cut(s) 43, 49, 373, 536, 676, 846
BssSI CACGAG 1 cut(s) 387
BssT1I CCWWGG 2 cut(s) 157, 359
Bst2BI CACGAG 1 cut(s) 387
Bst2UI CCWGG 2 cut(s) 381, 988
Bst4CI ACNGT 1 cut(s) 593
Bst6I CTCTTC 2 cut(s) 237, 642
BstAUI TGTACA 1 cut(s) 186
BstBAI YACGTR 1 cut(s) 657
BstC8I GCNNGC 5 cut(s) 164, 454, 787, 976, 996
BstDEI CTNAG 5 cut(s) 269, 276, 365, 468, 576
BstDSI CCRYGG 1 cut(s) 568
BstENI CCTNNNNNAGG 1 cut(s) 430
BstF5I GGATG 7 cut(s) 229, 251, 303, 313, 421, 723, 955
BstHHI GCGC 1 cut(s) 994
BstKTI GATC 6 cut(s) 46, 52, 376, 539, 679, 849
BstMBI GATC 6 cut(s) 43, 49, 373, 536, 676, 846
BstMCI CGRYCG 1 cut(s) 820
BstMWI GCNNNNNNNGC 6 cut(s) 61, 392, 498, 702, 835, 909
BstNI CCWGG 2 cut(s) 381, 988
BstNSI RCATGY 1 cut(s) 193
BstSCI CCNGG 4 cut(s) 379, 946, 947, 986
BstSFI CTRYAG 3 cut(s) 204, 490, 827
BstV1I GCAGC 5 cut(s) 302, 841, 844, 847, 915
BstX2I RGATCY 1 cut(s) 373
BstYI RGATCY 1 cut(s) 373
BsuRI GGCC 5 cut(s) 162, 332, 736, 934, 986
BtgI CCRYGG 1 cut(s) 568
BtsCI GGATG 7 cut(s) 229, 251, 303, 313, 421, 723, 955
BtsI GCAGTG 1 cut(s) 1005
BtsIMutI CAGTG 2 cut(s) 598, 1005
Cac8I GCNNGC 5 cut(s) 164, 454, 787, 976, 996
CfoI GCGC 1 cut(s) 994
Cfr10I RCCGGY 1 cut(s) 328
Cfr13I GGNCC 4 cut(s) 735, 753, 933, 952
Cfr9I CCCGGG 1 cut(s) 947
Csp6I GTAC 5 cut(s) 16, 87, 187, 284, 711
CviAII CATG 5 cut(s) 82, 190, 543, 763, 769
CviQI GTAC 5 cut(s) 16, 87, 187, 284, 711
DdeI CTNAG 5 cut(s) 269, 276, 365, 468, 576
DpnI GATC 6 cut(s) 45, 51, 375, 538, 678, 848
DpnII GATC 6 cut(s) 43, 49, 373, 536, 676, 846
Eam1104I CTCTTC 2 cut(s) 237, 642
EarI CTCTTC 2 cut(s) 237, 642
EciI GGCGGA 1 cut(s) 859
Eco130I CCWWGG 2 cut(s) 157, 359
Eco147I AGGCCT 1 cut(s) 986
Eco47I GGWCC 2 cut(s) 753, 952
Eco57I CTGAAG 1 cut(s) 676
Eco88I CYCGRG 2 cut(s) 947, 1033
EcoNI CCTNNNNNAGG 1 cut(s) 430
EcoO109I RGGNCCY 1 cut(s) 753
EcoRII CCWGG 2 cut(s) 379, 986
EcoT14I CCWWGG 2 cut(s) 157, 359
ErhI CCWWGG 2 cut(s) 157, 359
FaeI CATG 5 cut(s) 85, 193, 546, 766, 772
FaqI GGGAC 3 cut(s) 739, 930, 965
FatI CATG 5 cut(s) 81, 189, 542, 762, 768
FbaI TGATCA 2 cut(s) 43, 676
Fnu4HI GCNGC 6 cut(s) 266, 291, 830, 833, 836, 904
FokI GGATG 7 cut(s) 236, 238, 310, 320, 408, 730, 942
Fsp4HI GCNGC 6 cut(s) 266, 291, 830, 833, 836, 904
FspBI CTAG 3 cut(s) 72, 360, 432
GlaI GCGC 1 cut(s) 993
GluI GCNGC 6 cut(s) 266, 291, 830, 833, 836, 904
GsaI CCCAGC 1 cut(s) 297
HaeIII GGCC 5 cut(s) 162, 332, 736, 934, 986
HapII CCGG 4 cut(s) 329, 347, 587, 948
HhaI GCGC 1 cut(s) 994
Hin1II CATG 5 cut(s) 85, 193, 546, 766, 772
Hin6I GCGC 1 cut(s) 992
HinP1I GCGC 1 cut(s) 992
HincII GTYRAC 1 cut(s) 303
HindII GTYRAC 1 cut(s) 303
HinfI GANTC 2 cut(s) 248, 314
HpaII CCGG 4 cut(s) 329, 347, 587, 948
HphI GGTGA 6 cut(s) 23, 119, 543, 549, 686, 736
Hpy166II GTNNAC 3 cut(s) 87, 303, 439
Hpy188I TCNGA 2 cut(s) 319, 471
Hpy188III TCNNGA 2 cut(s) 47, 478
Hpy8I GTNNAC 3 cut(s) 87, 303, 439
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 4 cut(s) 29, 353, 466, 861
HpyCH4III ACNGT 1 cut(s) 593
HpyCH4IV ACGT 1 cut(s) 656
HpyCH4V TGCA 8 cut(s) 4, 395, 421, 492, 762, 789, 829, 1016
HpyF10VI GCNNNNNNNGC 6 cut(s) 61, 392, 498, 702, 835, 909
HpyF3I CTNAG 5 cut(s) 269, 276, 365, 468, 576
HpySE526I ACGT 1 cut(s) 656
Hsp92II CATG 5 cut(s) 85, 193, 546, 766, 772
HspAI GCGC 1 cut(s) 992
Ksp22I TGATCA 2 cut(s) 43, 676
Kzo9I GATC 6 cut(s) 43, 49, 373, 536, 676, 846
LmnI GCTCC 4 cut(s) 399, 498, 572, 811
Lsp1109I GCAGC 5 cut(s) 302, 841, 844, 847, 915
LweI GCATC 2 cut(s) 430, 1019
MaeI CTAG 3 cut(s) 72, 360, 432
MaeII ACGT 1 cut(s) 656
MaeIII GTNAC 1 cut(s) 192
MalI GATC 6 cut(s) 45, 51, 375, 538, 678, 848
MboI GATC 6 cut(s) 43, 49, 373, 536, 676, 846
MboII GAAGA 4 cut(s) 251, 254, 620, 659
MflI RGATCY 1 cut(s) 373
MhlI GDGCHC 3 cut(s) 388, 656, 816
MluCI AATT 3 cut(s) 94, 142, 913
MmeI TCCRAC 3 cut(s) 279, 342, 789
MseI TTAA 1 cut(s) 411
MslI CAYNNNNRTG 2 cut(s) 659, 767
MspA1I CMGCKG 4 cut(s) 280, 293, 696, 906
MspI CCGG 4 cut(s) 329, 347, 587, 948
MspR9I CCNGG 4 cut(s) 381, 948, 949, 988
Mva1269I GAATGC 1 cut(s) 402
MvaI CCWGG 2 cut(s) 381, 988
MwoI GCNNNNNNNGC 6 cut(s) 61, 392, 498, 702, 835, 909
NciI CCSGG 2 cut(s) 948, 949
NdeII GATC 6 cut(s) 43, 49, 373, 536, 676, 846
NlaIII CATG 5 cut(s) 85, 193, 546, 766, 772
NlaIV GGNNCC 3 cut(s) 327, 755, 953
NmeAIII GCCGAG 2 cut(s) 777, 835
NmuCI GTSAC 1 cut(s) 192
NspI RCATGY 1 cut(s) 193
PaeR7I CTCGAG 1 cut(s) 1033
PceI AGGCCT 1 cut(s) 986
PciI ACATGT 1 cut(s) 189
PctI GAATGC 1 cut(s) 402
PfeI GAWTC 2 cut(s) 248, 314
PkrI GCNGC 6 cut(s) 267, 292, 831, 834, 837, 905
Ppu21I YACGTR 1 cut(s) 657
PpuMI RGGWCCY 1 cut(s) 753
PscI ACATGT 1 cut(s) 189
Psp5II RGGWCCY 1 cut(s) 753
Psp6I CCWGG 2 cut(s) 379, 986
PspFI CCCAGC 1 cut(s) 293
PspGI CCWGG 2 cut(s) 379, 986
PspN4I GGNNCC 3 cut(s) 327, 755, 953
PspPI GGNCC 4 cut(s) 735, 753, 933, 952
PspPPI RGGWCCY 1 cut(s) 753
PspXI VCTCGAGB 1 cut(s) 1033
PstI CTGCAG 2 cut(s) 494, 831
PsuI RGATCY 1 cut(s) 373
PvuII CAGCTG 2 cut(s) 280, 293
RsaI GTAC 5 cut(s) 17, 88, 188, 285, 712
RsaNI GTAC 5 cut(s) 16, 87, 187, 284, 711
RseI CAYNNNNRTG 2 cut(s) 659, 767
SaqAI TTAA 1 cut(s) 411
SatI GCNGC 6 cut(s) 266, 291, 830, 833, 836, 904
Sau3AI GATC 6 cut(s) 43, 49, 373, 536, 676, 846
Sau96I GGNCC 4 cut(s) 735, 753, 933, 952
ScrFI CCNGG 4 cut(s) 381, 948, 949, 988
SduI GDGCHC 3 cut(s) 388, 656, 816
SfaNI GCATC 2 cut(s) 430, 1019
SfcI CTRYAG 3 cut(s) 204, 490, 827
Sfr274I CTCGAG 1 cut(s) 1033
SinI GGWCC 2 cut(s) 753, 952
SlaI CTCGAG 1 cut(s) 1033
SmaI CCCGGG 1 cut(s) 949
SmiMI CAYNNNNRTG 2 cut(s) 659, 767
SmlI CTYRAG 3 cut(s) 478, 980, 1033
SmoI CTYRAG 3 cut(s) 478, 980, 1033
Sse9I AATT 3 cut(s) 94, 142, 913
SseBI AGGCCT 1 cut(s) 986
SsiI CCGC 6 cut(s) 265, 696, 820, 870, 906, 959
SspMI CTAG 3 cut(s) 72, 360, 432
StuI AGGCCT 1 cut(s) 986
StyD4I CCNGG 4 cut(s) 379, 946, 947, 986
StyI CCWWGG 2 cut(s) 157, 359
TaaI ACNGT 1 cut(s) 593
TaiI ACGT 1 cut(s) 659
TaqI TCGA 3 cut(s) 804, 882, 1034
TasI AATT 3 cut(s) 94, 142, 913
TatI WGTACW 1 cut(s) 186
TauI GCSGC 1 cut(s) 268
TfiI GAWTC 2 cut(s) 248, 314
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TscAI CASTG 2 cut(s) 598, 1005
TseFI GTSAC 1 cut(s) 192
TseI GCWGC 5 cut(s) 290, 829, 832, 835, 903
Tsp45I GTSAC 1 cut(s) 192
TspDTI ATGAA 4 cut(s) 134, 252, 477, 677
TspGWI ACGGA 4 cut(s) 44, 320, 338, 585
TspMI CCCGGG 1 cut(s) 947
TspRI CASTG 2 cut(s) 598, 1005
VpaK11BI GGWCC 2 cut(s) 753, 952
XagI CCTNNNNNAGG 1 cut(s) 430
XceI RCATGY 1 cut(s) 193
XcmI CCANNNNNNNNNTGG 1 cut(s) 170
XhoI CTCGAG 1 cut(s) 1033
XmaI CCCGGG 1 cut(s) 947
XmaJI CCTAGG 1 cut(s) 359
XspI CTAG 3 cut(s) 72, 360, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.