Rh3BG304600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0010914
Physical Location & Seq
Reverse (-)
30764381 .. 30766745
2365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG304600.1

Sequence Viewer

Length: 1077 bp
ATGGCGTCAGATGAGAGTATGACCCTCAGGTCTTGTATCTCTATGCAGGAAGGTGAGTACGACGATTATACCGACGAAGGGTATGATCAGGATCAGCCTCATCAGCACTTGTCTAGGTTGTCCATGTGTACCAGCAATTCCGTCTATAGTGATGACCAGATGAATGATGATGGTGGCAATGGCAATTCCATCTACTACCAGGGCCAGCAAGAGAATGGTATGAGCATGTACATGTCACTCTTGTCCATAGACAGCTTTGATGGGGATGGGGATGTTGATGAAGAAGAGGAATCATCCAACAAGAAGCGGCTCAGTTCTCATCTGGTACTCGCAGCTGGGATGTCAACGGATGACGATTCCGACACGGAACCGGCCTGTTACTCCCTTCCGGCGACACCCCCTAGGCCGAGGAGGGATCTGCCTGGTGCTGGTGGTGCAGGGAGGATTCTTATTAACGAGGCGCATCCCAATTCTATGGTGGACAAAGAGTACGCTAGCGAAAATGAAGCTCAGAAGGCCTTGAGTGATGACTGCAGGAGGAGCAGGAGGAGGAGTAGGAGGAGAATGATGAGGAACAGATCATCATGGCTATCACCATCACCATTCCACCACGGAGCTAAGACGACACCGGACGATGATGATGATGATGATGAAGAAGATGAGGACAAGGAGGAGGAGAGTATGAATATGAATGTGTGTGGTGATCATTGTCACAGCTTCAGCGGAGAGAGCGAGGGTACGGGGATGGTGGTGATAGCAAGGCCCAAAGGAGGGAACAGGTCCCTCTGCATGGACATGGAGGAAGTCAAGGCCTGCAAAGACCTTGGCTTCGAGTTGGAGCACGACCGCATGCTGCAGCAGCAGCAGGAGATGATCCCTTCTCGGCTTTCTCTATCCGCCACCACCCTCGACACTAACTACACCACCAGCAGCGGTGGCAATTCCCCTATTGCCAACTGGCCCATTTCCAGTCCCGGGGACCATCCGCAGGAGGTCAAGGCTCGCCTCAAGGTCTGGGCGCAGGCAGTGGCTCTGGCATCTGCATCACCCACAACTCCCACAAGGCACTCGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

358

Amino Acids

39.61

Weight (kDa)

4.56

Isoelectric Point (pI)

71.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010914)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46940 AT3G62070 AT4G01670
fragaria_vesca FvH4_1g26130
malus_domestica MD00G1137300.v1.1
prunus_persica Prupe.3G001400_v2.0.a1
pyrus_communis pycom03g07920
rosa_chinensis RchiOBHm_Chr3g0485631
rosa_laevigata RLG00000023140
rosa_multiflora Rmu_sc0001272.1_g000004 Rmu_sc0004711.1_g000006 Rmu_sc0036906.1_g000001
rosa_roxburghii Rroxscaffold_6G00396570 Rroxscaffold_6G00396880
rosa_rugosa Rorug03G0220300
rosa_samantha Rh3AG269000 Rh3BG304600 Rh3CG303200 Rh3DG299500
rosa_wichuraiana Rw3G023990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 28
AciI CCGC 6 cut(s) 307, 723, 847, 897, 933, 986
AclWI GGATC 3 cut(s) 99, 423, 868
AcuI CTGAAG 1 cut(s) 703
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 6 cut(s) 59, 130, 230, 327, 491, 739
AfiI CCNNNNNNNGG 7 cut(s) 78, 428, 770, 771, 790, 975, 988
AflIII ACRYGT 1 cut(s) 231
AjnI CCWGG 2 cut(s) 198, 421
AluBI AGCT 6 cut(s) 255, 335, 509, 617, 717, 1074
AluI AGCT 6 cut(s) 255, 335, 509, 617, 717, 1074
Alw21I GWGCWC 1 cut(s) 843
AlwI GGATC 3 cut(s) 99, 423, 868
Ama87I CYCGRG 2 cut(s) 974, 1069
AoxI GGCC 7 cut(s) 202, 372, 404, 516, 761, 810, 959
ApeKI GCWGC 6 cut(s) 332, 853, 856, 859, 862, 930
ArsI GACNNNNNNTTYG 2 cut(s) 812, 844
AspA2I CCTAGG 1 cut(s) 401
AspLEI GCGC 2 cut(s) 463, 1021
AspS9I GGNCC 5 cut(s) 202, 762, 780, 960, 979
AsuC2I CCSGG 2 cut(s) 975, 976
AsuHPI GGTGA 6 cut(s) 65, 585, 591, 713, 763, 1038
AsuNHI GCTAGC 1 cut(s) 494
AvaI CYCGRG 2 cut(s) 974, 1069
AvaII GGWCC 2 cut(s) 780, 979
AvrII CCTAGG 1 cut(s) 401
AxyI CCTNAGG 1 cut(s) 26
Bbv12I GWGCWC 1 cut(s) 843
BbvI GCAGC 6 cut(s) 344, 840, 868, 871, 874, 942
BccI CCATC 7 cut(s) 164, 197, 254, 260, 604, 739, 990
BciT130I CCWGG 2 cut(s) 200, 423
BclI TGATCA 2 cut(s) 85, 703
BcnI CCSGG 2 cut(s) 975, 976
BfaI CTAG 3 cut(s) 114, 402, 495
BfmI CTRYAG 3 cut(s) 145, 532, 854
BisI GCNGC 7 cut(s) 308, 333, 854, 857, 860, 863, 931
BlnI CCTAGG 1 cut(s) 401
BlsI GCNGC 7 cut(s) 309, 334, 855, 858, 861, 864, 932
Bme1390I CCNGG 4 cut(s) 200, 423, 975, 976
Bme18I GGWCC 2 cut(s) 780, 979
BmeT110I CYCGRG 2 cut(s) 974, 1069
BmgT120I GGNCC 5 cut(s) 202, 762, 780, 960, 979
BmiI GGNNCC 3 cut(s) 369, 782, 980
BmrFI CCNGG 4 cut(s) 200, 423, 975, 976
BmsI GCATC 3 cut(s) 472, 1046, 1052
BmtI GCTAGC 1 cut(s) 498
BpuEI CTTGAG 2 cut(s) 541, 992
BpuMI CCSGG 2 cut(s) 975, 976
BsaBI GATNNNNATC 1 cut(s) 90
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 7 cut(s) 199, 401, 407, 610, 823, 974, 975
BsaWI WCCGGW 1 cut(s) 628
BsaXI ACNNNNNCTCC 2 cut(s) 538, 568
Bsc4I CCNNNNNNNGG 7 cut(s) 78, 428, 770, 771, 790, 975, 988
Bse118I RCCGGY 1 cut(s) 370
Bse1I ACTGG 2 cut(s) 962, 969
Bse21I CCTNAGG 1 cut(s) 26
Bse3DI GCAATG 1 cut(s) 184
Bse8I GATNNNNATC 1 cut(s) 90
BseBI CCWGG 2 cut(s) 200, 423
BseDI CCNNGG 7 cut(s) 199, 401, 407, 610, 823, 974, 975
BseGI GGATG 8 cut(s) 271, 277, 293, 345, 355, 463, 750, 982
BseJI GATNNNNATC 1 cut(s) 90
BseLI CCNNNNNNNGG 7 cut(s) 78, 428, 770, 771, 790, 975, 988
BseMI GCAATG 1 cut(s) 184
BseMII CTCAG 3 cut(s) 40, 325, 524
BseNI ACTGG 2 cut(s) 962, 969
BseRI GAGGAG 7 cut(s) 424, 553, 562, 565, 574, 686, 689
BseXI GCAGC 6 cut(s) 344, 840, 868, 871, 874, 942
BseYI CCCAGC 1 cut(s) 335
BsgI GTGCAG 1 cut(s) 456
Bsh1285I CGRYCG 1 cut(s) 847
BshFI GGCC 7 cut(s) 204, 374, 406, 518, 763, 812, 961
BsiEI CGRYCG 1 cut(s) 847
BsiHKAI GWGCWC 1 cut(s) 843
BsiHKCI CYCGRG 2 cut(s) 974, 1069
BsiSI CCGG 4 cut(s) 371, 389, 629, 975
BslFI GGGAC 3 cut(s) 766, 957, 992
BslI CCNNNNNNNGG 7 cut(s) 78, 428, 770, 771, 790, 975, 988
BsmFI GGGAC 3 cut(s) 766, 957, 992
BsnI GGCC 7 cut(s) 204, 374, 406, 518, 763, 812, 961
BsoBI CYCGRG 2 cut(s) 974, 1069
Bsp1286I GDGCHC 1 cut(s) 843
Bsp1407I TGTACA 1 cut(s) 228
Bsp143I GATC 6 cut(s) 85, 91, 415, 578, 703, 873
BspACI CCGC 6 cut(s) 307, 723, 847, 897, 933, 986
BspANI GGCC 7 cut(s) 204, 374, 406, 518, 763, 812, 961
BspCNI CTCAG 3 cut(s) 39, 324, 523
BspLI GGNNCC 3 cut(s) 369, 782, 980
BspMAI CTGCAG 2 cut(s) 536, 858
BspOI GCTAGC 1 cut(s) 498
BspPI GGATC 3 cut(s) 99, 423, 868
BsrDI GCAATG 1 cut(s) 184
BsrFI RCCGGY 1 cut(s) 370
BsrGI TGTACA 1 cut(s) 228
BsrI ACTGG 2 cut(s) 962, 969
BssAI RCCGGY 1 cut(s) 370
BssECI CCNNGG 7 cut(s) 199, 401, 407, 610, 823, 974, 975
BssMI GATC 6 cut(s) 85, 91, 415, 578, 703, 873
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 401, 823
Bst2UI CCWGG 2 cut(s) 200, 423
Bst6I CTCTTC 1 cut(s) 279
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 228
BstC8I GCNNGC 6 cut(s) 206, 496, 814, 851, 1003, 1023
BstDEI CTNAG 4 cut(s) 26, 311, 510, 618
BstDSI CCRYGG 1 cut(s) 610
BstF5I GGATG 8 cut(s) 271, 277, 293, 345, 355, 463, 750, 982
BstHHI GCGC 2 cut(s) 463, 1021
BstKTI GATC 6 cut(s) 88, 94, 418, 581, 706, 876
BstMBI GATC 6 cut(s) 85, 91, 415, 578, 703, 873
BstMCI CGRYCG 1 cut(s) 847
BstMWI GCNNNNNNNGC 8 cut(s) 103, 434, 515, 540, 729, 859, 862, 936
BstNI CCWGG 2 cut(s) 200, 423
BstNSI RCATGY 3 cut(s) 229, 235, 853
BstSCI CCNGG 4 cut(s) 198, 421, 973, 974
BstSFI CTRYAG 3 cut(s) 145, 532, 854
BstV1I GCAGC 6 cut(s) 344, 840, 868, 871, 874, 942
BstX2I RGATCY 1 cut(s) 415
BstXI CCANNNNNNTGG 1 cut(s) 475
BstYI RGATCY 1 cut(s) 415
Bsu36I CCTNAGG 1 cut(s) 26
BsuRI GGCC 7 cut(s) 204, 374, 406, 518, 763, 812, 961
BtgI CCRYGG 1 cut(s) 610
BtsCI GGATG 8 cut(s) 271, 277, 293, 345, 355, 463, 750, 982
BtsI GCAGTG 1 cut(s) 1032
BtsIMutI CAGTG 1 cut(s) 1032
Cac8I GCNNGC 6 cut(s) 206, 496, 814, 851, 1003, 1023
CfoI GCGC 2 cut(s) 463, 1021
Cfr10I RCCGGY 1 cut(s) 370
Cfr13I GGNCC 5 cut(s) 202, 762, 780, 960, 979
Cfr9I CCCGGG 1 cut(s) 974
Csp6I GTAC 6 cut(s) 58, 129, 229, 326, 490, 738
CviAII CATG 7 cut(s) 124, 226, 232, 585, 790, 796, 850
CviQI GTAC 6 cut(s) 58, 129, 229, 326, 490, 738
DdeI CTNAG 4 cut(s) 26, 311, 510, 618
DpnI GATC 6 cut(s) 87, 93, 417, 580, 705, 875
DpnII GATC 6 cut(s) 85, 91, 415, 578, 703, 873
DrdI GACNNNNNNGTC 1 cut(s) 28
DseDI GACNNNNNNGTC 1 cut(s) 28
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
EciI GGCGGA 1 cut(s) 886
Eco130I CCWWGG 2 cut(s) 401, 823
Eco147I AGGCCT 2 cut(s) 518, 812
Eco47I GGWCC 2 cut(s) 780, 979
Eco57I CTGAAG 1 cut(s) 703
Eco81I CCTNAGG 1 cut(s) 26
Eco88I CYCGRG 2 cut(s) 974, 1069
EcoO109I RGGNCCY 1 cut(s) 780
EcoRII CCWGG 2 cut(s) 198, 421
EcoT14I CCWWGG 2 cut(s) 401, 823
ErhI CCWWGG 2 cut(s) 401, 823
FaeI CATG 7 cut(s) 127, 229, 235, 588, 793, 799, 853
FaqI GGGAC 3 cut(s) 766, 957, 992
FatI CATG 7 cut(s) 123, 225, 231, 584, 789, 795, 849
FbaI TGATCA 2 cut(s) 85, 703
Fnu4HI GCNGC 7 cut(s) 308, 333, 854, 857, 860, 863, 931
FokI GGATG 8 cut(s) 278, 280, 284, 352, 362, 450, 757, 969
Fsp4HI GCNGC 7 cut(s) 308, 333, 854, 857, 860, 863, 931
FspBI CTAG 3 cut(s) 114, 402, 495
GlaI GCGC 2 cut(s) 462, 1020
GluI GCNGC 7 cut(s) 308, 333, 854, 857, 860, 863, 931
GsaI CCCAGC 1 cut(s) 339
HaeIII GGCC 7 cut(s) 204, 374, 406, 518, 763, 812, 961
HapII CCGG 4 cut(s) 371, 389, 629, 975
HhaI GCGC 2 cut(s) 463, 1021
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 7 cut(s) 127, 229, 235, 588, 793, 799, 853
Hin6I GCGC 2 cut(s) 461, 1019
HinP1I GCGC 2 cut(s) 461, 1019
HincII GTYRAC 1 cut(s) 345
HindII GTYRAC 1 cut(s) 345
HinfI GANTC 3 cut(s) 290, 356, 445
HpaII CCGG 4 cut(s) 371, 389, 629, 975
HphI GGTGA 6 cut(s) 65, 585, 591, 713, 763, 1038
Hpy166II GTNNAC 3 cut(s) 129, 345, 481
Hpy188I TCNGA 3 cut(s) 10, 361, 513
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 3 cut(s) 129, 345, 481
Hpy99I CGWCG 2 cut(s) 65, 77
HpyAV CCTTC 5 cut(s) 44, 71, 395, 508, 888
HpyCH4V TGCA 7 cut(s) 46, 437, 534, 789, 816, 856, 1043
HpyF10VI GCNNNNNNNGC 8 cut(s) 103, 434, 515, 540, 729, 859, 862, 936
HpyF3I CTNAG 4 cut(s) 26, 311, 510, 618
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 7 cut(s) 127, 229, 235, 588, 793, 799, 853
HspAI GCGC 2 cut(s) 461, 1019
Ksp22I TGATCA 2 cut(s) 85, 703
Kzo9I GATC 6 cut(s) 85, 91, 415, 578, 703, 873
LmnI GCTCC 3 cut(s) 540, 614, 838
Lsp1109I GCAGC 6 cut(s) 344, 840, 868, 871, 874, 942
LweI GCATC 3 cut(s) 472, 1046, 1052
MaeI CTAG 3 cut(s) 114, 402, 495
MaeIII GTNAC 3 cut(s) 234, 377, 710
MalI GATC 6 cut(s) 87, 93, 417, 580, 705, 875
MboI GATC 6 cut(s) 85, 91, 415, 578, 703, 873
MboII GAAGA 4 cut(s) 293, 296, 665, 668
MflI RGATCY 1 cut(s) 415
MhlI GDGCHC 1 cut(s) 843
MluCI AATT 4 cut(s) 136, 184, 469, 940
MmeI TCCRAC 3 cut(s) 321, 384, 816
MseI TTAA 1 cut(s) 453
MslI CAYNNNNRTG 2 cut(s) 230, 794
MspA1I CMGCKG 3 cut(s) 335, 723, 933
MspI CCGG 4 cut(s) 371, 389, 629, 975
MspR9I CCNGG 4 cut(s) 200, 423, 975, 976
MvaI CCWGG 2 cut(s) 200, 423
MwoI GCNNNNNNNGC 8 cut(s) 103, 434, 515, 540, 729, 859, 862, 936
NciI CCSGG 2 cut(s) 975, 976
NdeII GATC 6 cut(s) 85, 91, 415, 578, 703, 873
NheI GCTAGC 1 cut(s) 494
NlaIII CATG 7 cut(s) 127, 229, 235, 588, 793, 799, 853
NlaIV GGNNCC 3 cut(s) 369, 782, 980
NmeAIII GCCGAG 2 cut(s) 432, 862
NmuCI GTSAC 2 cut(s) 234, 710
NspI RCATGY 3 cut(s) 229, 235, 853
PaeI GCATGC 1 cut(s) 853
PaeR7I CTCGAG 1 cut(s) 1069
PceI AGGCCT 2 cut(s) 518, 812
PciI ACATGT 1 cut(s) 231
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PfeI GAWTC 3 cut(s) 290, 356, 445
PkrI GCNGC 7 cut(s) 309, 334, 855, 858, 861, 864, 932
PpuMI RGGWCCY 1 cut(s) 780
PscI ACATGT 1 cut(s) 231
Psp5II RGGWCCY 1 cut(s) 780
Psp6I CCWGG 2 cut(s) 198, 421
PspFI CCCAGC 1 cut(s) 335
PspGI CCWGG 2 cut(s) 198, 421
PspN4I GGNNCC 3 cut(s) 369, 782, 980
PspPI GGNCC 5 cut(s) 202, 762, 780, 960, 979
PspPPI RGGWCCY 1 cut(s) 780
PspXI VCTCGAGB 1 cut(s) 1069
PstI CTGCAG 2 cut(s) 536, 858
PsuI RGATCY 1 cut(s) 415
PvuII CAGCTG 1 cut(s) 335
RsaI GTAC 6 cut(s) 59, 130, 230, 327, 491, 739
RsaNI GTAC 6 cut(s) 58, 129, 229, 326, 490, 738
RseI CAYNNNNRTG 2 cut(s) 230, 794
SaqAI TTAA 1 cut(s) 453
SatI GCNGC 7 cut(s) 308, 333, 854, 857, 860, 863, 931
Sau3AI GATC 6 cut(s) 85, 91, 415, 578, 703, 873
Sau96I GGNCC 5 cut(s) 202, 762, 780, 960, 979
ScrFI CCNGG 4 cut(s) 200, 423, 975, 976
SduI GDGCHC 1 cut(s) 843
SfaNI GCATC 3 cut(s) 472, 1046, 1052
SfcI CTRYAG 3 cut(s) 145, 532, 854
Sfr274I CTCGAG 1 cut(s) 1069
SinI GGWCC 2 cut(s) 780, 979
SlaI CTCGAG 1 cut(s) 1069
SmaI CCCGGG 1 cut(s) 976
SmiMI CAYNNNNRTG 2 cut(s) 230, 794
SmlI CTYRAG 3 cut(s) 520, 1007, 1069
SmoI CTYRAG 3 cut(s) 520, 1007, 1069
SphI GCATGC 1 cut(s) 853
Sse9I AATT 4 cut(s) 136, 184, 469, 940
SseBI AGGCCT 2 cut(s) 518, 812
SsiI CCGC 6 cut(s) 307, 723, 847, 897, 933, 986
SspMI CTAG 3 cut(s) 114, 402, 495
StuI AGGCCT 2 cut(s) 518, 812
StyD4I CCNGG 4 cut(s) 198, 421, 973, 974
StyI CCWWGG 2 cut(s) 401, 823
TaqI TCGA 3 cut(s) 831, 909, 1070
TasI AATT 4 cut(s) 136, 184, 469, 940
TatI WGTACW 1 cut(s) 228
TauI GCSGC 1 cut(s) 310
TfiI GAWTC 3 cut(s) 290, 356, 445
Tru1I TTAA 1 cut(s) 453
Tru9I TTAA 1 cut(s) 453
TscAI CASTG 1 cut(s) 1032
TseFI GTSAC 2 cut(s) 234, 710
TseI GCWGC 6 cut(s) 332, 853, 856, 859, 862, 930
Tsp45I GTSAC 2 cut(s) 234, 710
TspDTI ATGAA 6 cut(s) 176, 294, 519, 666, 698, 704
TspGWI ACGGA 4 cut(s) 130, 362, 380, 627
TspMI CCCGGG 1 cut(s) 974
TspRI CASTG 1 cut(s) 1032
VpaK11BI GGWCC 2 cut(s) 780, 979
XceI RCATGY 3 cut(s) 229, 235, 853
XcmI CCANNNNNNNNNTGG 2 cut(s) 212, 475
XhoI CTCGAG 1 cut(s) 1069
XmaI CCCGGG 1 cut(s) 974
XmaJI CCTAGG 1 cut(s) 401
XspI CTAG 3 cut(s) 114, 402, 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.