Prupe.3G001400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0010914
Physical Location & Seq
Reverse (-)
117648 .. 121074
3427 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G001400.1

Sequence Viewer

Length: 1020 bp
ATGGCGTCAGATGAAAGTATGACCATCCGCTCCTGCATCTCCATGCAGGAAGACGAGTATGACGATTATACGACGGATGATGGATATGATCACCATCCCCATCTCCACAACTTGTCCAGGCTTTCTATGTGTACTAGTAGGAGTTCCACCTATGGTGCTCCTGATCAGGATGAAATTGATGATGATGTTGATGGTAACTACTTCTACCAAGGCCTACATCAAGATCAAGATCATGATGCCCAAGAACAGAGTGGTATGAGTATGTACATGTCACTCTTGTCCATGGAAAGCTTTGACGGGGATGTAGACGAGGAGGAAACATTGTCATCCAATGATAAACGAACCAAACAAGTACTACTGGAAGCTGGGCTGTCCTCCGACTCTGACAAGGAACCCGGCTGCTGTTACTCGCTTCCAGCGACACCCCCAAGACCAAGGACTCAGGCTAGTGCTCCAGCGGGAATGTTCAATTATAAGCATGACAATCCCATGTTGGTCAAAGAGTATGCCAGCGAGAACGAAGCTCAAACGCTGATGAGCGTCGATTCCAAGAAGAGGAGCAGGAGAAGTAGGAGGAGAATCTCATCAGACAACAAGGAGAACATGAATATGATGATGACGAGGATGGGTAGTAATCAGCTTGACCATTGTCATAGCTTTAGTGGGGAGAGTGAGGGTGGCTCTGGTACAGGGGTGGTGGTGATAACAAGGCCCAAAGGAGGGAGGAGGTCCCTGTGCATGGACTTGGAGGAAGTCAAGGCTTGCAGAGATCTTGGATTTGAGTTGGAACACCAGCACATGCTGCAGGAGATGCCCTCTCGTCTTTCTCTCTCCACCCCAACCCCAACTCTCACTCTCGATACCAACACTACCTGCAGTAGCGGTGGCAATTCCCCCATCGCTAACTGGCGCATCTCAAGCCCTGGTGACGACCCACGGGATGTCAAGGCTCGCCTCAAGGTCTGGGCGCAGGCAGTGGCACTGGCATCCACATCAAGACAAGGCAGCGGAGCCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

340

Amino Acids

37.6

Weight (kDa)

4.87

Isoelectric Point (pI)

64.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010914)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46940 AT3G62070 AT4G01670
fragaria_vesca FvH4_1g26130
malus_domestica MD00G1137300.v1.1
prunus_persica Prupe.3G001400_v2.0.a1
pyrus_communis pycom03g07920
rosa_chinensis RchiOBHm_Chr3g0485631
rosa_laevigata RLG00000023140
rosa_multiflora Rmu_sc0001272.1_g000004 Rmu_sc0004711.1_g000006 Rmu_sc0036906.1_g000001
rosa_roxburghii Rroxscaffold_6G00396570 Rroxscaffold_6G00396880
rosa_rugosa Rorug03G0220300
rosa_samantha Rh3AG269000 Rh3BG304600 Rh3CG303200 Rh3DG299500
rosa_wichuraiana Rw3G023990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 474
Acc36I ACCTGC 1 cut(s) 881
AccBSI CCGCTC 1 cut(s) 30
AccI GTMKAC 1 cut(s) 306
AciI CCGC 4 cut(s) 28, 458, 882, 1008
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 4 cut(s) 133, 266, 354, 688
AfiI CCNNNNNNNGG 4 cut(s) 555, 719, 720, 739
AflIII ACRYGT 1 cut(s) 267
AgsI TTSAA 1 cut(s) 469
AhlI ACTAGT 1 cut(s) 134
AjnI CCWGG 2 cut(s) 116, 922
AluBI AGCT 5 cut(s) 291, 365, 524, 640, 657
AluI AGCT 5 cut(s) 291, 365, 524, 640, 657
Alw21I GWGCWC 2 cut(s) 160, 454
AoxI GGCC 2 cut(s) 211, 710
ApeKI GCWGC 3 cut(s) 399, 802, 1005
AspLEI GCGC 2 cut(s) 912, 970
AspS9I GGNCC 2 cut(s) 711, 729
AsuC2I CCSGG 1 cut(s) 396
AsuHPI GGTGA 3 cut(s) 83, 712, 938
AvaII GGWCC 1 cut(s) 729
BaeI ACNNNNGTAYC 2 cut(s) 678, 711
BbsI GAAGAC 1 cut(s) 57
Bbv12I GWGCWC 2 cut(s) 160, 454
BbvI GCAGC 2 cut(s) 386, 789
BccI CCATC 7 cut(s) 32, 74, 102, 108, 185, 619, 905
BciT130I CCWGG 2 cut(s) 118, 924
BclI TGATCA 2 cut(s) 88, 163
BcnI CCSGG 1 cut(s) 396
BcuI ACTAGT 1 cut(s) 134
BfaI CTAG 2 cut(s) 135, 447
BfmI CTRYAG 2 cut(s) 803, 874
BfuAI ACCTGC 1 cut(s) 881
BglII AGATCT 1 cut(s) 769
BisI GCNGC 3 cut(s) 400, 803, 1006
BlsI GCNGC 3 cut(s) 401, 804, 1007
BmcAI AGTACT 1 cut(s) 354
Bme1390I CCNGG 3 cut(s) 118, 396, 924
Bme18I GGWCC 1 cut(s) 729
BmgT120I GGNCC 2 cut(s) 711, 729
BmiI GGNNCC 3 cut(s) 393, 731, 1012
BmrFI CCNGG 3 cut(s) 118, 396, 924
BmsI GCATC 5 cut(s) 45, 226, 801, 921, 995
BoxI GACNNNNGTC 1 cut(s) 648
BpiI GAAGAC 1 cut(s) 57
BplI GAGNNNNNCTC 4 cut(s) 665, 697, 800, 832
BpmI CTGGAG 1 cut(s) 438
BpuEI CTTGAG 2 cut(s) 901, 941
BpuMI CCSGG 1 cut(s) 396
BsaBI GATNNNNATC 2 cut(s) 93, 228
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 5 cut(s) 208, 282, 434, 922, 935
Bsc4I CCNNNNNNNGG 4 cut(s) 555, 719, 720, 739
Bse1I ACTGG 3 cut(s) 363, 911, 987
Bse8I GATNNNNATC 2 cut(s) 93, 228
BseBI CCWGG 2 cut(s) 118, 924
BseDI CCNNGG 5 cut(s) 208, 282, 434, 922, 935
BseGI GGATG 9 cut(s) 24, 82, 94, 175, 307, 326, 630, 946, 986
BseJI GATNNNNATC 2 cut(s) 93, 228
BseLI CCNNNNNNNGG 4 cut(s) 555, 719, 720, 739
BseMII CTCAG 1 cut(s) 455
BseNI ACTGG 3 cut(s) 363, 911, 987
BseRI GAGGAG 4 cut(s) 326, 571, 589, 739
BseXI GCAGC 2 cut(s) 386, 789
BseYI CCCAGC 1 cut(s) 365
BshFI GGCC 2 cut(s) 213, 712
BsiHKAI GWGCWC 2 cut(s) 160, 454
BsiSI CCGG 1 cut(s) 396
BslFI GGGAC 1 cut(s) 715
BslI CCNNNNNNNGG 4 cut(s) 555, 719, 720, 739
BsmFI GGGAC 1 cut(s) 715
BsnI GGCC 2 cut(s) 213, 712
Bsp1286I GDGCHC 2 cut(s) 160, 454
Bsp1407I TGTACA 1 cut(s) 264
Bsp143I GATC 5 cut(s) 88, 163, 223, 229, 769
Bsp19I CCATGG 1 cut(s) 282
BspACI CCGC 4 cut(s) 28, 458, 882, 1008
BspANI GGCC 2 cut(s) 213, 712
BspCNI CTCAG 1 cut(s) 454
BspHI TCATGA 1 cut(s) 232
BspLI GGNNCC 3 cut(s) 393, 731, 1012
BspMAI CTGCAG 2 cut(s) 807, 878
BspMI ACCTGC 1 cut(s) 881
BsrBI CCGCTC 1 cut(s) 30
BsrGI TGTACA 1 cut(s) 264
BsrI ACTGG 3 cut(s) 363, 911, 987
BssECI CCNNGG 5 cut(s) 208, 282, 434, 922, 935
BssMI GATC 5 cut(s) 88, 163, 223, 229, 769
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 3 cut(s) 208, 282, 434
Bst2UI CCWGG 2 cut(s) 118, 924
Bst6I CTCTTC 1 cut(s) 548
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 2 cut(s) 802, 811
BstAUI TGTACA 1 cut(s) 264
BstC8I GCNNGC 4 cut(s) 511, 763, 952, 972
BstDEI CTNAG 1 cut(s) 441
BstDSI CCRYGG 2 cut(s) 282, 935
BstF5I GGATG 9 cut(s) 24, 82, 94, 175, 307, 326, 630, 946, 986
BstHHI GCGC 2 cut(s) 912, 970
BstKTI GATC 5 cut(s) 91, 166, 226, 232, 772
BstMBI GATC 5 cut(s) 88, 163, 223, 229, 769
BstMWI GCNNNNNNNGC 3 cut(s) 802, 811, 918
BstNI CCWGG 2 cut(s) 118, 924
BstNSI RCATGY 2 cut(s) 271, 802
BstPAI GACNNNNGTC 1 cut(s) 648
BstSCI CCNGG 3 cut(s) 116, 394, 922
BstSFI CTRYAG 2 cut(s) 803, 874
BstV1I GCAGC 2 cut(s) 386, 789
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 769
BstYI RGATCY 1 cut(s) 769
BsuRI GGCC 2 cut(s) 213, 712
BtgI CCRYGG 2 cut(s) 282, 935
BtgZI GCGATG 1 cut(s) 883
BtsCI GGATG 9 cut(s) 24, 82, 94, 175, 307, 326, 630, 946, 986
BtsI GCAGTG 1 cut(s) 981
BtsIMutI CAGTG 2 cut(s) 980, 981
BveI ACCTGC 1 cut(s) 881
Cac8I GCNNGC 4 cut(s) 511, 763, 952, 972
CciI TCATGA 1 cut(s) 232
CfoI GCGC 2 cut(s) 912, 970
Cfr13I GGNCC 2 cut(s) 711, 729
CseI GACGC 1 cut(s) 529
Csp6I GTAC 4 cut(s) 132, 265, 353, 687
CviAII CATG 9 cut(s) 43, 233, 268, 283, 479, 490, 604, 739, 799
CviQI GTAC 4 cut(s) 132, 265, 353, 687
DdeI CTNAG 1 cut(s) 441
DpnI GATC 5 cut(s) 90, 165, 225, 231, 771
DpnII GATC 5 cut(s) 88, 163, 223, 229, 769
Eam1104I CTCTTC 1 cut(s) 548
EarI CTCTTC 1 cut(s) 548
Eco130I CCWWGG 3 cut(s) 208, 282, 434
Eco147I AGGCCT 1 cut(s) 213
Eco47I GGWCC 1 cut(s) 729
EcoO109I RGGNCCY 1 cut(s) 729
EcoRII CCWGG 2 cut(s) 116, 922
EcoT14I CCWWGG 3 cut(s) 208, 282, 434
ErhI CCWWGG 3 cut(s) 208, 282, 434
FaeI CATG 9 cut(s) 46, 236, 271, 286, 482, 493, 607, 742, 802
FaqI GGGAC 1 cut(s) 715
FatI CATG 9 cut(s) 42, 232, 267, 282, 478, 489, 603, 738, 798
FauI CCCGC 1 cut(s) 451
FbaI TGATCA 2 cut(s) 88, 163
FblI GTMKAC 1 cut(s) 306
Fnu4HI GCNGC 3 cut(s) 400, 803, 1006
FokI GGATG 9 cut(s) 11, 81, 89, 182, 313, 314, 637, 953, 973
Fsp4HI GCNGC 3 cut(s) 400, 803, 1006
FspBI CTAG 2 cut(s) 135, 447
GlaI GCGC 2 cut(s) 911, 969
GluI GCNGC 3 cut(s) 400, 803, 1006
GsaI CCCAGC 1 cut(s) 369
GsuI CTGGAG 1 cut(s) 438
HaeIII GGCC 2 cut(s) 213, 712
HapII CCGG 1 cut(s) 396
HgaI GACGC 1 cut(s) 529
HhaI GCGC 2 cut(s) 912, 970
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 9 cut(s) 46, 236, 271, 286, 482, 493, 607, 742, 802
Hin6I GCGC 2 cut(s) 910, 968
HinP1I GCGC 2 cut(s) 910, 968
HindIII AAGCTT 1 cut(s) 289
HinfI GANTC 4 cut(s) 380, 439, 545, 579
HpaII CCGG 1 cut(s) 396
HphI GGTGA 3 cut(s) 83, 712, 938
Hpy166II GTNNAC 2 cut(s) 132, 307
Hpy188I TCNGA 4 cut(s) 10, 379, 385, 589
Hpy188III TCNNGA 7 cut(s) 161, 167, 221, 227, 233, 857, 996
Hpy8I GTNNAC 2 cut(s) 132, 307
Hpy99I CGWCG 2 cut(s) 76, 545
HpyCH4V TGCA 6 cut(s) 36, 46, 738, 765, 805, 876
HpyF10VI GCNNNNNNNGC 3 cut(s) 802, 811, 918
HpyF3I CTNAG 1 cut(s) 441
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 9 cut(s) 46, 236, 271, 286, 482, 493, 607, 742, 802
HspAI GCGC 2 cut(s) 910, 968
Ksp22I TGATCA 2 cut(s) 88, 163
Kzo9I GATC 5 cut(s) 88, 163, 223, 229, 769
LmnI GCTCC 5 cut(s) 35, 163, 457, 558, 1010
Lsp1109I GCAGC 2 cut(s) 386, 789
LweI GCATC 5 cut(s) 45, 226, 801, 921, 995
MaeI CTAG 2 cut(s) 135, 447
MaeIII GTNAC 4 cut(s) 194, 270, 404, 926
MalI GATC 5 cut(s) 90, 165, 225, 231, 771
MbiI CCGCTC 1 cut(s) 30
MboI GATC 5 cut(s) 88, 163, 223, 229, 769
MboII GAAGA 2 cut(s) 62, 565
MflI RGATCY 1 cut(s) 769
MhlI GDGCHC 2 cut(s) 160, 454
MluCI AATT 3 cut(s) 174, 469, 889
MlyI GAGTC 2 cut(s) 374, 433
MmeI TCCRAC 2 cut(s) 402, 765
MslI CAYNNNNRTG 2 cut(s) 41, 608
MspA1I CMGCKG 2 cut(s) 458, 1008
MspI CCGG 1 cut(s) 396
MspR9I CCNGG 3 cut(s) 118, 396, 924
MvaI CCWGG 2 cut(s) 118, 924
MwoI GCNNNNNNNGC 3 cut(s) 802, 811, 918
NciI CCSGG 1 cut(s) 396
NcoI CCATGG 1 cut(s) 282
NdeII GATC 5 cut(s) 88, 163, 223, 229, 769
NlaIII CATG 9 cut(s) 46, 236, 271, 286, 482, 493, 607, 742, 802
NlaIV GGNNCC 3 cut(s) 393, 731, 1012
NmuCI GTSAC 2 cut(s) 270, 926
NspI RCATGY 2 cut(s) 271, 802
PagI TCATGA 1 cut(s) 232
PceI AGGCCT 1 cut(s) 213
PciI ACATGT 1 cut(s) 267
PcsI WCGNNNNNNNCGW 2 cut(s) 60, 416
PfeI GAWTC 2 cut(s) 545, 579
PkrI GCNGC 3 cut(s) 401, 804, 1007
PleI GAGTC 2 cut(s) 374, 433
PpsI GAGTC 2 cut(s) 374, 433
PpuMI RGGWCCY 1 cut(s) 729
PscI ACATGT 1 cut(s) 267
PshAI GACNNNNGTC 1 cut(s) 648
PsiI TTATAA 1 cut(s) 474
Psp5II RGGWCCY 1 cut(s) 729
Psp6I CCWGG 2 cut(s) 116, 922
PspFI CCCAGC 1 cut(s) 365
PspGI CCWGG 2 cut(s) 116, 922
PspN4I GGNNCC 3 cut(s) 393, 731, 1012
PspPI GGNCC 2 cut(s) 711, 729
PspPPI RGGWCCY 1 cut(s) 729
PstI CTGCAG 2 cut(s) 807, 878
PsuI RGATCY 1 cut(s) 769
RsaI GTAC 4 cut(s) 133, 266, 354, 688
RsaNI GTAC 4 cut(s) 132, 265, 353, 687
RseI CAYNNNNRTG 2 cut(s) 41, 608
SatI GCNGC 3 cut(s) 400, 803, 1006
Sau3AI GATC 5 cut(s) 88, 163, 223, 229, 769
Sau96I GGNCC 2 cut(s) 711, 729
ScaI AGTACT 1 cut(s) 354
SchI GAGTC 2 cut(s) 374, 433
ScrFI CCNGG 3 cut(s) 118, 396, 924
SduI GDGCHC 2 cut(s) 160, 454
SetI ASST 9 cut(s) 152, 293, 367, 526, 642, 659, 731, 875, 963
SfaNI GCATC 5 cut(s) 45, 226, 801, 921, 995
SfcI CTRYAG 2 cut(s) 803, 874
SinI GGWCC 1 cut(s) 729
SmiMI CAYNNNNRTG 2 cut(s) 41, 608
SmlI CTYRAG 2 cut(s) 916, 956
SmoI CTYRAG 2 cut(s) 916, 956
SpeI ACTAGT 1 cut(s) 134
Sse9I AATT 3 cut(s) 174, 469, 889
SseBI AGGCCT 1 cut(s) 213
SsiI CCGC 4 cut(s) 28, 458, 882, 1008
SspMI CTAG 2 cut(s) 135, 447
StuI AGGCCT 1 cut(s) 213
StyD4I CCNGG 3 cut(s) 116, 394, 922
StyI CCWWGG 3 cut(s) 208, 282, 434
TaqI TCGA 2 cut(s) 543, 858
TasI AATT 3 cut(s) 174, 469, 889
TatI WGTACW 3 cut(s) 131, 264, 352
TfiI GAWTC 2 cut(s) 545, 579
TscAI CASTG 2 cut(s) 981, 987
TseFI GTSAC 2 cut(s) 270, 926
TseI GCWGC 3 cut(s) 399, 802, 1005
Tsp45I GTSAC 2 cut(s) 270, 926
TspDTI ATGAA 3 cut(s) 27, 186, 620
TspGWI ACGGA 1 cut(s) 89
TspRI CASTG 2 cut(s) 981, 987
VpaK11BI GGWCC 1 cut(s) 729
XceI RCATGY 2 cut(s) 271, 802
XcmI CCANNNNNNNNNTGG 1 cut(s) 248
XmiI GTMKAC 1 cut(s) 306
XspI CTAG 2 cut(s) 135, 447
ZrmI AGTACT 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.