AT4G01670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0010914
Physical Location & Seq
Reverse (-)
711192 .. 712643
1452 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G01670.1

Sequence Viewer

Length: 750 bp
ATGGCTTTTGATGAAGATATGAAAATGGCGTCTTTCTTAAGAGAAGAAGAAGAACAACACTATTCTTTATCAAGACTCTCCGTTTGTTCCAACTACGACGGCGATGAAGCCGACGGTGAGTCTTCTGCTTCCGACGAGAAACGTGTTGTCCACGGCGGAGGGGAGAAATCCATGGAGGAGCTAAATTTTTCAGATTCTGATAAAGAATCAACCGGTTGTCAATCTCTCCCGGCGACACCTCCGAGACGGAGACGGCGGAGAGGCGGTGGAGGAGGAGGATATTTAGCGGTGAGTTCTCCGGTTTCCGGCGATAAAGCTTACGCTAGCGAGAACGAAGTACAAAAGACGAATAACAATCAGAGGAGAAGGAGGAGATTGAAACCGGAGTGTCCACCGTGGGTTGATAGTATGCGGAGGAGCTACGTCGGAGATGAACAGAGTAGTCACGGTGGTTACGGAGGAGGAGTGGTGGTTGTTACGAGGCCTATAGGAGGAGGAAGGCCATTGTGTATGGATTTAGAAGAAGTCAAAGCTTGTAAAGATTTGGGGTTTGAGCTTGAACCGGGTCGGGTTTCGTATTCCGGGTCAACGGTGGATACTAGTAGTGGCGGCAATTCTCCTATCTCTTCTAACCACCGTATTTCGAGTCCCGGGGATGATCCAAAAGACGTGAAAGCGAGGCTTAAGGCGTGGGCTCAAGCTGTGGCTTTTGTGTCCACTACTCATCATCAACCTCCTAATTCTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

249

Amino Acids

27.0

Weight (kDa)

5.92

Isoelectric Point (pI)

79.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010914)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46940 AT3G62070 AT4G01670
fragaria_vesca FvH4_1g26130
malus_domestica MD00G1137300.v1.1
prunus_persica Prupe.3G001400_v2.0.a1
pyrus_communis pycom03g07920
rosa_chinensis RchiOBHm_Chr3g0485631
rosa_laevigata RLG00000023140
rosa_multiflora Rmu_sc0001272.1_g000004 Rmu_sc0004711.1_g000006 Rmu_sc0036906.1_g000001
rosa_roxburghii Rroxscaffold_6G00396570 Rroxscaffold_6G00396880
rosa_rugosa Rorug03G0220300
rosa_samantha Rh3AG269000 Rh3BG304600 Rh3CG303200 Rh3DG299500
rosa_wichuraiana Rw3G023990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 156, 256, 264, 287, 412, 609
AclWI GGATC 1 cut(s) 653
AcsI RAATTY 1 cut(s) 184
AcyI GRCGYC 1 cut(s) 29
AfaI GTAC 1 cut(s) 339
AfiI CCNNNNNNNGG 2 cut(s) 305, 491
AflII CTTAAG 2 cut(s) 37, 683
AflIII ACRYGT 1 cut(s) 142
AgeI ACCGGT 1 cut(s) 212
AgsI TTSAA 2 cut(s) 379, 560
AhdI GACNNNNNGTC 1 cut(s) 118
AhlI ACTAGT 1 cut(s) 599
AjiI CACGTC 1 cut(s) 670
AluBI AGCT 6 cut(s) 181, 317, 420, 533, 556, 701
AluI AGCT 6 cut(s) 181, 317, 420, 533, 556, 701
Alw26I GTCTC 2 cut(s) 238, 244
AlwI GGATC 1 cut(s) 653
AlwNI CAGNNNCTG 1 cut(s) 197
Ama87I CYCGRG 1 cut(s) 650
AoxI GGCC 2 cut(s) 482, 500
ApoI RAATTY 1 cut(s) 184
ArsI GACNNNNNNTTYG 2 cut(s) 66, 98
AsiGI ACCGGT 1 cut(s) 212
AsuC2I CCSGG 5 cut(s) 230, 564, 583, 651, 652
AsuHPI GGTGA 2 cut(s) 128, 301
AsuNHI GCTAGC 1 cut(s) 323
AvaI CYCGRG 1 cut(s) 650
BanII GRGCYC 1 cut(s) 697
BbsI GAAGAC 1 cut(s) 114
BceAI ACGGC 3 cut(s) 115, 169, 269
BciVI GTATCC 1 cut(s) 589
BcnI CCSGG 5 cut(s) 230, 564, 583, 651, 652
BcoDI GTCTC 2 cut(s) 238, 244
BcuI ACTAGT 1 cut(s) 599
BfaI CTAG 2 cut(s) 324, 600
BfmI CTRYAG 1 cut(s) 486
BfrI CTTAAG 2 cut(s) 37, 683
BfuI GTATCC 1 cut(s) 589
BisI GCNGC 1 cut(s) 610
BlsI GCNGC 1 cut(s) 611
Bme1390I CCNGG 5 cut(s) 230, 564, 583, 651, 652
BmeRI GACNNNNNGTC 1 cut(s) 118
BmeT110I CYCGRG 1 cut(s) 650
BmgBI CACGTC 1 cut(s) 670
BmrFI CCNGG 5 cut(s) 230, 564, 583, 651, 652
BmtI GCTAGC 1 cut(s) 327
BpiI GAAGAC 1 cut(s) 114
BpuEI CTTGAG 1 cut(s) 681
BpuMI CCSGG 5 cut(s) 230, 564, 583, 651, 652
BsaHI GRCGYC 1 cut(s) 29
BsaJI CCNNGG 5 cut(s) 151, 171, 395, 650, 651
BsaWI WCCGGW 3 cut(s) 212, 298, 382
BsaXI ACNNNNNCTCC 8 cut(s) 250, 280, 450, 453, 456, 480, 483, 486
Bsc4I CCNNNNNNNGG 2 cut(s) 305, 491
Bse118I RCCGGY 1 cut(s) 212
BseDI CCNNGG 5 cut(s) 151, 171, 395, 650, 651
BseGI GGATG 1 cut(s) 661
BseLI CCNNNNNNNGG 2 cut(s) 305, 491
BseRI GAGGAG 9 cut(s) 191, 285, 288, 376, 385, 430, 474, 477, 507
BshFI GGCC 2 cut(s) 484, 502
BshTI ACCGGT 1 cut(s) 212
BsiHKCI CYCGRG 1 cut(s) 650
BsiSI CCGG 8 cut(s) 213, 230, 299, 306, 383, 563, 582, 651
BslFI GGGAC 1 cut(s) 633
BslI CCNNNNNNNGG 2 cut(s) 305, 491
BsmAI GTCTC 2 cut(s) 238, 244
BsmBI CGTCTC 2 cut(s) 238, 244
BsmFI GGGAC 1 cut(s) 633
BsnI GGCC 2 cut(s) 484, 502
BsoBI CYCGRG 1 cut(s) 650
Bsp1286I GDGCHC 1 cut(s) 697
Bsp143I GATC 1 cut(s) 658
Bsp19I CCATGG 1 cut(s) 171
BspACI CCGC 6 cut(s) 156, 256, 264, 287, 412, 609
BspANI GGCC 2 cut(s) 484, 502
BspOI GCTAGC 1 cut(s) 327
BspPI GGATC 1 cut(s) 653
BspTI CTTAAG 2 cut(s) 37, 683
BsrFI RCCGGY 1 cut(s) 212
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 5 cut(s) 151, 171, 395, 650, 651
BssMI GATC 1 cut(s) 658
BssNI GRCGYC 1 cut(s) 29
BssT1I CCWWGG 1 cut(s) 171
Bst4CI ACNGT 5 cut(s) 116, 396, 449, 592, 638
Bst6I CTCTTC 1 cut(s) 631
BstACI GRCGYC 1 cut(s) 29
BstAFI CTTAAG 2 cut(s) 37, 683
BstC8I GCNNGC 1 cut(s) 325
BstDSI CCRYGG 3 cut(s) 151, 171, 395
BstENI CCTNNNNNAGG 1 cut(s) 489
BstF5I GGATG 1 cut(s) 661
BstKTI GATC 1 cut(s) 661
BstMAI GTCTC 2 cut(s) 238, 244
BstMBI GATC 1 cut(s) 658
BstSCI CCNGG 5 cut(s) 228, 562, 581, 649, 650
BstSFI CTRYAG 1 cut(s) 486
BstV2I GAAGAC 1 cut(s) 114
BsuI GTATCC 1 cut(s) 589
BsuRI GGCC 2 cut(s) 484, 502
BtgI CCRYGG 3 cut(s) 151, 171, 395
BtgZI GCGATG 1 cut(s) 117
BtrI CACGTC 1 cut(s) 670
BtsCI GGATG 1 cut(s) 661
Cac8I GCNNGC 1 cut(s) 325
CaiI CAGNNNCTG 1 cut(s) 197
Cfr10I RCCGGY 1 cut(s) 212
Cfr9I CCCGGG 1 cut(s) 650
CseI GACGC 1 cut(s) 18
Csp6I GTAC 1 cut(s) 338
CspAI ACCGGT 1 cut(s) 212
CviAII CATG 1 cut(s) 172
CviQI GTAC 1 cut(s) 338
DpnI GATC 1 cut(s) 660
DpnII GATC 1 cut(s) 658
DriI GACNNNNNGTC 1 cut(s) 118
Eam1104I CTCTTC 1 cut(s) 631
Eam1105I GACNNNNNGTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 631
EciI GGCGGA 2 cut(s) 171, 271
Eco130I CCWWGG 1 cut(s) 171
Eco147I AGGCCT 1 cut(s) 484
Eco24I GRGCYC 1 cut(s) 697
Eco88I CYCGRG 1 cut(s) 650
EcoNI CCTNNNNNAGG 1 cut(s) 489
EcoT14I CCWWGG 1 cut(s) 171
EcoT38I GRGCYC 1 cut(s) 697
ErhI CCWWGG 1 cut(s) 171
Esp3I CGTCTC 2 cut(s) 238, 244
FaeI CATG 1 cut(s) 175
FaiI YATR 6 cut(s) 20, 173, 410, 488, 512, 748
FalI AAGNNNNNCTT 2 cut(s) 666, 698
FaqI GGGAC 1 cut(s) 633
FatI CATG 1 cut(s) 171
Fnu4HI GCNGC 1 cut(s) 610
FokI GGATG 1 cut(s) 668
FriOI GRGCYC 1 cut(s) 697
Fsp4HI GCNGC 1 cut(s) 610
FspBI CTAG 2 cut(s) 324, 600
GluI GCNGC 1 cut(s) 610
HaeIII GGCC 2 cut(s) 484, 502
HapII CCGG 8 cut(s) 213, 230, 299, 306, 383, 563, 582, 651
HgaI GACGC 1 cut(s) 18
Hin1I GRCGYC 1 cut(s) 29
Hin1II CATG 1 cut(s) 175
HincII GTYRAC 1 cut(s) 588
HindII GTYRAC 1 cut(s) 588
HindIII AAGCTT 2 cut(s) 315, 531
HinfI GANTC 5 cut(s) 75, 119, 194, 206, 646
HpaII CCGG 8 cut(s) 213, 230, 299, 306, 383, 563, 582, 651
HphI GGTGA 2 cut(s) 128, 301
Hpy166II GTNNAC 4 cut(s) 151, 392, 588, 717
Hpy188I TCNGA 6 cut(s) 133, 193, 199, 243, 360, 428
Hpy188III TCNNGA 1 cut(s) 72
Hpy8I GTNNAC 4 cut(s) 151, 392, 588, 717
Hpy99I CGWCG 4 cut(s) 101, 116, 137, 428
HpyAV CCTTC 2 cut(s) 360, 492
HpyCH4III ACNGT 5 cut(s) 116, 396, 449, 592, 638
HpyCH4IV ACGT 3 cut(s) 142, 423, 669
HpySE526I ACGT 3 cut(s) 142, 423, 669
Hsp92I GRCGYC 1 cut(s) 29
Hsp92II CATG 1 cut(s) 175
Kzo9I GATC 1 cut(s) 658
LmnI GCTCC 2 cut(s) 178, 417
LpnPI CCDG 8 cut(s) 226, 243, 312, 319, 396, 576, 595, 664
MaeI CTAG 2 cut(s) 324, 600
MaeII ACGT 3 cut(s) 142, 423, 669
MaeIII GTNAC 3 cut(s) 443, 452, 475
MalI GATC 1 cut(s) 660
MboI GATC 1 cut(s) 658
MboII GAAGA 7 cut(s) 26, 56, 59, 62, 114, 533, 618
MhlI GDGCHC 1 cut(s) 697
MluCI AATT 3 cut(s) 184, 613, 739
MlyI GAGTC 3 cut(s) 69, 128, 655
MmeI TCCRAC 3 cut(s) 114, 156, 406
MseI TTAA 2 cut(s) 38, 684
MspCI CTTAAG 2 cut(s) 37, 683
MspI CCGG 8 cut(s) 213, 230, 299, 306, 383, 563, 582, 651
MspR9I CCNGG 5 cut(s) 230, 564, 583, 651, 652
NciI CCSGG 5 cut(s) 230, 564, 583, 651, 652
NcoI CCATGG 1 cut(s) 171
NdeII GATC 1 cut(s) 658
NheI GCTAGC 1 cut(s) 323
NlaIII CATG 1 cut(s) 175
NmuCI GTSAC 1 cut(s) 443
PceI AGGCCT 1 cut(s) 484
PfeI GAWTC 2 cut(s) 194, 206
PinAI ACCGGT 1 cut(s) 212
PkrI GCNGC 1 cut(s) 611
PleI GAGTC 3 cut(s) 69, 127, 654
PpsI GAGTC 3 cut(s) 69, 127, 654
PstNI CAGNNNCTG 1 cut(s) 197
RsaI GTAC 1 cut(s) 339
RsaNI GTAC 1 cut(s) 338
SaqAI TTAA 2 cut(s) 38, 684
SatI GCNGC 1 cut(s) 610
Sau3AI GATC 1 cut(s) 658
SchI GAGTC 3 cut(s) 69, 128, 655
ScrFI CCNGG 5 cut(s) 230, 564, 583, 651, 652
SduI GDGCHC 1 cut(s) 697
SfcI CTRYAG 1 cut(s) 486
SmaI CCCGGG 1 cut(s) 652
SmlI CTYRAG 3 cut(s) 37, 683, 696
SmoI CTYRAG 3 cut(s) 37, 683, 696
SpeI ACTAGT 1 cut(s) 599
Sse9I AATT 3 cut(s) 184, 613, 739
SseBI AGGCCT 1 cut(s) 484
SsiI CCGC 6 cut(s) 156, 256, 264, 287, 412, 609
SspMI CTAG 2 cut(s) 324, 600
StuI AGGCCT 1 cut(s) 484
StyD4I CCNGG 5 cut(s) 228, 562, 581, 649, 650
StyI CCWWGG 1 cut(s) 171
TaaI ACNGT 5 cut(s) 116, 396, 449, 592, 638
TaiI ACGT 3 cut(s) 145, 426, 672
TaqI TCGA 1 cut(s) 644
TasI AATT 3 cut(s) 184, 613, 739
TatI WGTACW 1 cut(s) 337
TauI GCSGC 1 cut(s) 612
TfiI GAWTC 2 cut(s) 194, 206
Tru1I TTAA 2 cut(s) 38, 684
Tru9I TTAA 2 cut(s) 38, 684
TseFI GTSAC 1 cut(s) 443
Tsp45I GTSAC 1 cut(s) 443
TspDTI ATGAA 4 cut(s) 27, 35, 120, 447
TspGWI ACGGA 3 cut(s) 70, 262, 471
TspMI CCCGGG 1 cut(s) 650
Vha464I CTTAAG 2 cut(s) 37, 683
XagI CCTNNNNNAGG 1 cut(s) 489
XapI RAATTY 1 cut(s) 184
XmaI CCCGGG 1 cut(s) 650
XspI CTAG 2 cut(s) 324, 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.