Rroxscaffold_6G00396880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0010914
Physical Location & Seq
Forward (+)
18454910 .. 18456217
1308 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00396880.1

Sequence Viewer

Length: 1056 bp
ATGGCGTCAGATGAGAGTATGACCCTCAGGTCTTGTATCTCTATGCAGGAAGGTGAGTACGACGATTATACCGACGAAGGGTATGATCAGGATCAGCCTCATCAGCACTTGTCTAGGTTGTCCATGTGTACCAGCAATTCCATCTATGGTGATGACCAGATGAACGATGATGGTGGCAGTGGCAATTCCATCTACTACCAAGGCCTACAAGAGAATGGTATGAGCATGTACATGTCACTCTTGTCTATAGACAGCTTTGATGGGGATGGGGATGGGGATGTTGATGAAGAAGAGGAATCATCTACCAAGAAGCGGCTCAGTTCTCAGCTGGTACTCGCAGCTGGGATGTCAACGGAGGACGATTCCGACAAGGAACTGGCGCTGAGGAGGGATCTGCCTGGTGCTGGTGGTGCAGGGAGCATTCTTATTAACAAGATGCATCCCTATTCTAGGGTGGACAAAGAGTATGCGAGCGAAAATGAAGCTCAGAAGGCCTTGAGTGATGACTGCAGGAGGAGCAGGAGGAGGAACAGGAGGAGAATGATGAAGAACAGATCATCATGGCTATCACCATCACCATTCCACCACGGAGCTAAGACGACACCGGACAGTGATGATGGAGAAGATGAGGACAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGCATGTATATGAATGTGTGTGGTGATCATTGTCACAGCTTCAGCGGAGAGAGCGAGGGTACGGGGATGGTGGTGATAGCAAGGCCCAAAGGAGGGAACAGGTCCCTCTGCATGGACATGGAGGAAGTCAAGGCTTGCAAAGACCTCGGCTTCGAGTTGGAGCACGACCGCATGCTGCAGCAGCAGCAGGAGATGATCCCTTCTCGGCTTTCTCTATCCGCCACCACCCTCGACACTAACTACACCACCAGCAGCGGTGGCAATTCCCCTATTGCCAACTGGCCCATTTCCAGTCCCGGGGACCATCCGCAGGAGGTCAAGGCTCGCCTCAAGGCCTGGGCGCAGGCAGTGGCTCTGGCATCTGCATCACCCACAAGGCACTCGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

351

Amino Acids

38.93

Weight (kDa)

4.55

Isoelectric Point (pI)

81.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010914)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46940 AT3G62070 AT4G01670
fragaria_vesca FvH4_1g26130
malus_domestica MD00G1137300.v1.1
prunus_persica Prupe.3G001400_v2.0.a1
pyrus_communis pycom03g07920
rosa_chinensis RchiOBHm_Chr3g0485631
rosa_laevigata RLG00000023140
rosa_multiflora Rmu_sc0001272.1_g000004 Rmu_sc0004711.1_g000006 Rmu_sc0036906.1_g000001
rosa_roxburghii Rroxscaffold_6G00396570 Rroxscaffold_6G00396880
rosa_rugosa Rorug03G0220300
rosa_samantha Rh3AG269000 Rh3BG304600 Rh3CG303200 Rh3DG299500
rosa_wichuraiana Rw3G023990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 28
AciI CCGC 6 cut(s) 313, 711, 835, 885, 921, 974
AclWI GGATC 3 cut(s) 99, 399, 856
AcuI CTGAAG 1 cut(s) 691
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 5 cut(s) 59, 130, 230, 333, 727
AfiI CCNNNNNNNGG 9 cut(s) 78, 312, 404, 450, 758, 759, 778, 963, 976
AflIII ACRYGT 1 cut(s) 231
AjnI CCWGG 2 cut(s) 397, 1001
AluBI AGCT 7 cut(s) 255, 328, 341, 485, 593, 705, 1053
AluI AGCT 7 cut(s) 255, 328, 341, 485, 593, 705, 1053
Alw21I GWGCWC 1 cut(s) 831
AlwI GGATC 3 cut(s) 99, 399, 856
Ama87I CYCGRG 2 cut(s) 962, 1048
AoxI GGCC 5 cut(s) 202, 492, 749, 947, 999
ApeKI GCWGC 6 cut(s) 338, 841, 844, 847, 850, 918
ArsI GACNNNNNNTTYG 2 cut(s) 800, 832
AspLEI GCGC 2 cut(s) 382, 1009
AspS9I GGNCC 4 cut(s) 750, 768, 948, 967
AsuC2I CCSGG 2 cut(s) 963, 964
AsuHPI GGTGA 7 cut(s) 65, 161, 561, 567, 701, 751, 1026
AvaI CYCGRG 2 cut(s) 962, 1048
AvaII GGWCC 2 cut(s) 768, 967
AxyI CCTNAGG 1 cut(s) 26
Bbv12I GWGCWC 1 cut(s) 831
BbvCI CCTCAGC 1 cut(s) 383
BbvI GCAGC 6 cut(s) 350, 828, 856, 859, 862, 930
BcgI CGANNNNNNTGC 2 cut(s) 793, 827
BciT130I CCWGG 2 cut(s) 399, 1003
BclI TGATCA 2 cut(s) 85, 691
BcnI CCSGG 2 cut(s) 963, 964
BfaI CTAG 2 cut(s) 114, 450
BfmI CTRYAG 3 cut(s) 246, 508, 842
BfoI RGCGCY 1 cut(s) 383
BisI GCNGC 7 cut(s) 314, 339, 842, 845, 848, 851, 919
BlsI GCNGC 7 cut(s) 315, 340, 843, 846, 849, 852, 920
Bme1390I CCNGG 4 cut(s) 399, 963, 964, 1003
Bme18I GGWCC 2 cut(s) 768, 967
BmeT110I CYCGRG 2 cut(s) 962, 1048
BmgT120I GGNCC 4 cut(s) 750, 768, 948, 967
BmiI GGNNCC 2 cut(s) 770, 968
BmrFI CCNGG 4 cut(s) 399, 963, 964, 1003
BmsI GCATC 4 cut(s) 426, 448, 1034, 1040
Bpu10I CCTNAGC 1 cut(s) 383
BpuEI CTTGAG 2 cut(s) 517, 980
BpuMI CCSGG 2 cut(s) 963, 964
BsaBI GATNNNNATC 1 cut(s) 90
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 6 cut(s) 199, 586, 811, 962, 963, 1002
BsaWI WCCGGW 1 cut(s) 604
BsaXI ACNNNNNCTCC 2 cut(s) 656, 686
Bsc4I CCNNNNNNNGG 9 cut(s) 78, 312, 404, 450, 758, 759, 778, 963, 976
Bse1I ACTGG 3 cut(s) 381, 950, 957
Bse21I CCTNAGG 1 cut(s) 26
Bse8I GATNNNNATC 1 cut(s) 90
BseBI CCWGG 2 cut(s) 399, 1003
BseDI CCNNGG 6 cut(s) 199, 586, 811, 962, 963, 1002
BseGI GGATG 7 cut(s) 271, 277, 283, 351, 439, 738, 970
BseJI GATNNNNATC 1 cut(s) 90
BseLI CCNNNNNNNGG 9 cut(s) 78, 312, 404, 450, 758, 759, 778, 963, 976
BseMII CTCAG 5 cut(s) 40, 331, 338, 374, 500
BseNI ACTGG 3 cut(s) 381, 950, 957
BseXI GCAGC 6 cut(s) 350, 828, 856, 859, 862, 930
BseYI CCCAGC 1 cut(s) 341
BsgI GTGCAG 1 cut(s) 432
Bsh1285I CGRYCG 1 cut(s) 835
BshFI GGCC 5 cut(s) 204, 494, 751, 949, 1001
BsiEI CGRYCG 1 cut(s) 835
BsiHKAI GWGCWC 1 cut(s) 831
BsiHKCI CYCGRG 2 cut(s) 962, 1048
BsiSI CCGG 2 cut(s) 605, 963
BslFI GGGAC 3 cut(s) 754, 945, 980
BslI CCNNNNNNNGG 9 cut(s) 78, 312, 404, 450, 758, 759, 778, 963, 976
BsmFI GGGAC 3 cut(s) 754, 945, 980
BsmI GAATGC 1 cut(s) 420
BsnI GGCC 5 cut(s) 204, 494, 751, 949, 1001
BsoBI CYCGRG 2 cut(s) 962, 1048
Bsp1286I GDGCHC 1 cut(s) 831
Bsp1407I TGTACA 1 cut(s) 228
Bsp143I GATC 6 cut(s) 85, 91, 391, 554, 691, 861
BspACI CCGC 6 cut(s) 313, 711, 835, 885, 921, 974
BspANI GGCC 5 cut(s) 204, 494, 751, 949, 1001
BspCNI CTCAG 5 cut(s) 39, 330, 337, 375, 499
BspLI GGNNCC 2 cut(s) 770, 968
BspMAI CTGCAG 2 cut(s) 512, 846
BspPI GGATC 3 cut(s) 99, 399, 856
BsrGI TGTACA 1 cut(s) 228
BsrI ACTGG 3 cut(s) 381, 950, 957
BssECI CCNNGG 6 cut(s) 199, 586, 811, 962, 963, 1002
BssMI GATC 6 cut(s) 85, 91, 391, 554, 691, 861
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 199
Bst2UI CCWGG 2 cut(s) 399, 1003
Bst4CI ACNGT 1 cut(s) 611
Bst6I CTCTTC 1 cut(s) 285
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 228
BstC8I GCNNGC 5 cut(s) 472, 802, 839, 991, 1011
BstDEI CTNAG 6 cut(s) 26, 317, 324, 383, 486, 594
BstDSI CCRYGG 1 cut(s) 586
BstENI CCTNNNNNAGG 1 cut(s) 448
BstF5I GGATG 7 cut(s) 271, 277, 283, 351, 439, 738, 970
BstH2I RGCGCY 1 cut(s) 383
BstHHI GCGC 2 cut(s) 382, 1009
BstKTI GATC 6 cut(s) 88, 94, 394, 557, 694, 864
BstMBI GATC 6 cut(s) 85, 91, 391, 554, 691, 861
BstMCI CGRYCG 1 cut(s) 835
BstMWI GCNNNNNNNGC 8 cut(s) 103, 410, 491, 516, 717, 847, 850, 924
BstNI CCWGG 2 cut(s) 399, 1003
BstNSI RCATGY 4 cut(s) 229, 235, 673, 841
BstSCI CCNGG 4 cut(s) 397, 961, 962, 1001
BstSFI CTRYAG 3 cut(s) 246, 508, 842
BstV1I GCAGC 6 cut(s) 350, 828, 856, 859, 862, 930
BstX2I RGATCY 1 cut(s) 391
BstYI RGATCY 1 cut(s) 391
Bsu36I CCTNAGG 1 cut(s) 26
BsuRI GGCC 5 cut(s) 204, 494, 751, 949, 1001
BtgI CCRYGG 1 cut(s) 586
BtsCI GGATG 7 cut(s) 271, 277, 283, 351, 439, 738, 970
BtsI GCAGTG 2 cut(s) 184, 1020
BtsIMutI CAGTG 3 cut(s) 184, 616, 1020
Cac8I GCNNGC 5 cut(s) 472, 802, 839, 991, 1011
CfoI GCGC 2 cut(s) 382, 1009
Cfr13I GGNCC 4 cut(s) 750, 768, 948, 967
Cfr9I CCCGGG 1 cut(s) 962
Csp6I GTAC 5 cut(s) 58, 129, 229, 332, 726
CviAII CATG 8 cut(s) 124, 226, 232, 561, 670, 778, 784, 838
CviQI GTAC 5 cut(s) 58, 129, 229, 332, 726
DdeI CTNAG 6 cut(s) 26, 317, 324, 383, 486, 594
DpnI GATC 6 cut(s) 87, 93, 393, 556, 693, 863
DpnII GATC 6 cut(s) 85, 91, 391, 554, 691, 861
DrdI GACNNNNNNGTC 1 cut(s) 28
DseDI GACNNNNNNGTC 1 cut(s) 28
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
EciI GGCGGA 1 cut(s) 874
Eco130I CCWWGG 1 cut(s) 199
Eco147I AGGCCT 3 cut(s) 204, 494, 1001
Eco47I GGWCC 2 cut(s) 768, 967
Eco57I CTGAAG 1 cut(s) 691
Eco81I CCTNAGG 1 cut(s) 26
Eco88I CYCGRG 2 cut(s) 962, 1048
EcoNI CCTNNNNNAGG 1 cut(s) 448
EcoO109I RGGNCCY 1 cut(s) 768
EcoRII CCWGG 2 cut(s) 397, 1001
EcoT14I CCWWGG 1 cut(s) 199
EcoT22I ATGCAT 1 cut(s) 441
ErhI CCWWGG 1 cut(s) 199
FaeI CATG 8 cut(s) 127, 229, 235, 564, 673, 781, 787, 841
FaqI GGGAC 3 cut(s) 754, 945, 980
FatI CATG 8 cut(s) 123, 225, 231, 560, 669, 777, 783, 837
FbaI TGATCA 2 cut(s) 85, 691
Fnu4HI GCNGC 7 cut(s) 314, 339, 842, 845, 848, 851, 919
FokI GGATG 7 cut(s) 278, 284, 290, 358, 426, 745, 957
Fsp4HI GCNGC 7 cut(s) 314, 339, 842, 845, 848, 851, 919
FspBI CTAG 2 cut(s) 114, 450
GlaI GCGC 2 cut(s) 381, 1008
GluI GCNGC 7 cut(s) 314, 339, 842, 845, 848, 851, 919
GsaI CCCAGC 1 cut(s) 345
HaeII RGCGCY 1 cut(s) 383
HaeIII GGCC 5 cut(s) 204, 494, 751, 949, 1001
HapII CCGG 2 cut(s) 605, 963
HhaI GCGC 2 cut(s) 382, 1009
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 8 cut(s) 127, 229, 235, 564, 673, 781, 787, 841
Hin6I GCGC 2 cut(s) 380, 1007
HinP1I GCGC 2 cut(s) 380, 1007
HincII GTYRAC 1 cut(s) 351
HindII GTYRAC 1 cut(s) 351
HinfI GANTC 2 cut(s) 296, 362
HpaII CCGG 2 cut(s) 605, 963
HphI GGTGA 7 cut(s) 65, 161, 561, 567, 701, 751, 1026
Hpy166II GTNNAC 3 cut(s) 129, 351, 457
Hpy188I TCNGA 3 cut(s) 10, 367, 489
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 3 cut(s) 129, 351, 457
Hpy99I CGWCG 2 cut(s) 65, 77
HpyAV CCTTC 4 cut(s) 44, 71, 484, 876
HpyCH4III ACNGT 1 cut(s) 611
HpyCH4V TGCA 8 cut(s) 46, 413, 439, 510, 777, 804, 844, 1031
HpyF10VI GCNNNNNNNGC 8 cut(s) 103, 410, 491, 516, 717, 847, 850, 924
HpyF3I CTNAG 6 cut(s) 26, 317, 324, 383, 486, 594
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 8 cut(s) 127, 229, 235, 564, 673, 781, 787, 841
HspAI GCGC 2 cut(s) 380, 1007
Ksp22I TGATCA 2 cut(s) 85, 691
Kzo9I GATC 6 cut(s) 85, 91, 391, 554, 691, 861
LmnI GCTCC 4 cut(s) 417, 516, 590, 826
Lsp1109I GCAGC 6 cut(s) 350, 828, 856, 859, 862, 930
LweI GCATC 4 cut(s) 426, 448, 1034, 1040
MaeI CTAG 2 cut(s) 114, 450
MaeIII GTNAC 2 cut(s) 234, 698
MalI GATC 6 cut(s) 87, 93, 393, 556, 693, 863
MboI GATC 6 cut(s) 85, 91, 391, 554, 691, 861
MboII GAAGA 4 cut(s) 299, 302, 559, 635
MflI RGATCY 1 cut(s) 391
MhlI GDGCHC 1 cut(s) 831
MluCI AATT 3 cut(s) 136, 184, 928
MmeI TCCRAC 2 cut(s) 390, 804
Mph1103I ATGCAT 1 cut(s) 441
MseI TTAA 1 cut(s) 429
MslI CAYNNNNRTG 3 cut(s) 230, 674, 782
MspA1I CMGCKG 4 cut(s) 328, 341, 711, 921
MspI CCGG 2 cut(s) 605, 963
MspR9I CCNGG 4 cut(s) 399, 963, 964, 1003
Mva1269I GAATGC 1 cut(s) 420
MvaI CCWGG 2 cut(s) 399, 1003
MwoI GCNNNNNNNGC 8 cut(s) 103, 410, 491, 516, 717, 847, 850, 924
NciI CCSGG 2 cut(s) 963, 964
NdeII GATC 6 cut(s) 85, 91, 391, 554, 691, 861
NlaIII CATG 8 cut(s) 127, 229, 235, 564, 673, 781, 787, 841
NlaIV GGNNCC 2 cut(s) 770, 968
NmeAIII GCCGAG 2 cut(s) 792, 850
NmuCI GTSAC 2 cut(s) 234, 698
NsiI ATGCAT 1 cut(s) 441
NspI RCATGY 4 cut(s) 229, 235, 673, 841
PaeI GCATGC 1 cut(s) 841
PaeR7I CTCGAG 1 cut(s) 1048
PceI AGGCCT 3 cut(s) 204, 494, 1001
PciI ACATGT 1 cut(s) 231
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PctI GAATGC 1 cut(s) 420
PfeI GAWTC 2 cut(s) 296, 362
PkrI GCNGC 7 cut(s) 315, 340, 843, 846, 849, 852, 920
PpuMI RGGWCCY 1 cut(s) 768
PscI ACATGT 1 cut(s) 231
Psp5II RGGWCCY 1 cut(s) 768
Psp6I CCWGG 2 cut(s) 397, 1001
PspFI CCCAGC 1 cut(s) 341
PspGI CCWGG 2 cut(s) 397, 1001
PspN4I GGNNCC 2 cut(s) 770, 968
PspPI GGNCC 4 cut(s) 750, 768, 948, 967
PspPPI RGGWCCY 1 cut(s) 768
PspXI VCTCGAGB 1 cut(s) 1048
PstI CTGCAG 2 cut(s) 512, 846
PsuI RGATCY 1 cut(s) 391
PvuII CAGCTG 2 cut(s) 328, 341
RsaI GTAC 5 cut(s) 59, 130, 230, 333, 727
RsaNI GTAC 5 cut(s) 58, 129, 229, 332, 726
RseI CAYNNNNRTG 3 cut(s) 230, 674, 782
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 7 cut(s) 314, 339, 842, 845, 848, 851, 919
Sau3AI GATC 6 cut(s) 85, 91, 391, 554, 691, 861
Sau96I GGNCC 4 cut(s) 750, 768, 948, 967
ScrFI CCNGG 4 cut(s) 399, 963, 964, 1003
SduI GDGCHC 1 cut(s) 831
SfaNI GCATC 4 cut(s) 426, 448, 1034, 1040
SfcI CTRYAG 3 cut(s) 246, 508, 842
Sfr274I CTCGAG 1 cut(s) 1048
SinI GGWCC 2 cut(s) 768, 967
SlaI CTCGAG 1 cut(s) 1048
SmaI CCCGGG 1 cut(s) 964
SmiMI CAYNNNNRTG 3 cut(s) 230, 674, 782
SmlI CTYRAG 3 cut(s) 496, 995, 1048
SmoI CTYRAG 3 cut(s) 496, 995, 1048
SphI GCATGC 1 cut(s) 841
Sse9I AATT 3 cut(s) 136, 184, 928
SseBI AGGCCT 3 cut(s) 204, 494, 1001
SsiI CCGC 6 cut(s) 313, 711, 835, 885, 921, 974
SspMI CTAG 2 cut(s) 114, 450
StuI AGGCCT 3 cut(s) 204, 494, 1001
StyD4I CCNGG 4 cut(s) 397, 961, 962, 1001
StyI CCWWGG 1 cut(s) 199
TaaI ACNGT 1 cut(s) 611
TaqI TCGA 3 cut(s) 819, 897, 1049
TasI AATT 3 cut(s) 136, 184, 928
TatI WGTACW 1 cut(s) 228
TauI GCSGC 1 cut(s) 316
TfiI GAWTC 2 cut(s) 296, 362
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TscAI CASTG 3 cut(s) 184, 616, 1020
TseFI GTSAC 2 cut(s) 234, 698
TseI GCWGC 6 cut(s) 338, 841, 844, 847, 850, 918
Tsp45I GTSAC 2 cut(s) 234, 698
TspDTI ATGAA 5 cut(s) 176, 300, 495, 560, 692
TspGWI ACGGA 2 cut(s) 368, 603
TspMI CCCGGG 1 cut(s) 962
TspRI CASTG 3 cut(s) 184, 616, 1020
VpaK11BI GGWCC 2 cut(s) 768, 967
XagI CCTNNNNNAGG 1 cut(s) 448
XceI RCATGY 4 cut(s) 229, 235, 673, 841
XhoI CTCGAG 1 cut(s) 1048
XmaI CCCGGG 1 cut(s) 962
XspI CTAG 2 cut(s) 114, 450
Zsp2I ATGCAT 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.