Rw3G023990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0010914
Physical Location & Seq
Reverse (-)
30541393 .. 30542604
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G023990.1

Sequence Viewer

Length: 1017 bp
ATGGCGTCAGATGAGAGTATGACCCTCAGGTCTTGTATCTCTATGCAGGAAGGTGAGTACGACGATTATACGACGAAGGGTATGATCAGGATCATCCTCATCAGCACTTGTCTAGGTTGTCCATGTATGAATGATGATGGTGGCAATGGCAATTCCATCTACTACCAAGGCCAGCAAGAGAATGGTATGAGCTTGTACATGTCACTCTTGTCTATAGACAGCTTTGATGGGGATGGAGATGTTGATGAAGAAGAGGAATCATCCAACAAGAAGCGGCTCAGTTCTCAGCGGGTACTCGCAGCTGGGATGTCAACGGATGACGATTCCGACACGGAACCGGCCTGTTACTCCCTTCCGGCGACACCCCCTAGGCTGAGGAGGGATCTGCCTGGTGCTCGTGGTGCAGGGAGCATTCTTATTAACAAGTATGCGAGCGAAAATGAAGCTCAGAAGGCCTTGAGTGATGACTGCAGGAGGAGCAGGAGGAGGAGTAGGAGGAGAATGATGAGGAACAGATCATCATGGCTATCACCATCACCATTCCACCACGGAGCTAAGACGACACCGGACAGTGATGATGATGGCGAAGATGAGGACAAGGAGGAGGAAGAGAGCATGTATATGAATGTGTGTGGTGATCATTGTCACAGCTTCAGCGGAGAGAGCGAGGGTACGGGGATGGTGGTGATAGCAAGGCCCAAAGGAGGGAACAGGTCCCTCTGCATGGACATGGAGGAAGTCAAGGCTTGCAAAGACCTCGGCTTCGAGTTGGAGCACGACCGCATGCTGCAGCAGCAGCAGGAGATGATCCCTTCTCGGCTTTCTCTATCCGCCACCACCCTCGACACTAACTACACCACCAGCAGCGGTGGCAATTCCCTATTGCCAACTGGCCCATTTCCAGTCCCGCAAATATCTACTTCAGGGGACCATCCGCAGGAGGTCAAGGCTCGCCTCAAGGCCTGGGCGCAGGCAGTGGCTCTGGCATCTGCATCACCCACAAGGCACTCGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

338

Amino Acids

37.12

Weight (kDa)

4.83

Isoelectric Point (pI)

78.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010914)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46940 AT3G62070 AT4G01670
fragaria_vesca FvH4_1g26130
malus_domestica MD00G1137300.v1.1
prunus_persica Prupe.3G001400_v2.0.a1
pyrus_communis pycom03g07920
rosa_chinensis RchiOBHm_Chr3g0485631
rosa_laevigata RLG00000023140
rosa_multiflora Rmu_sc0001272.1_g000004 Rmu_sc0004711.1_g000006 Rmu_sc0036906.1_g000001
rosa_roxburghii Rroxscaffold_6G00396570 Rroxscaffold_6G00396880
rosa_rugosa Rorug03G0220300
rosa_samantha Rh3AG269000 Rh3BG304600 Rh3CG303200 Rh3DG299500
rosa_wichuraiana Rw3G023990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 28
AciI CCGC 8 cut(s) 274, 289, 657, 781, 831, 867, 908, 935
AclWI GGATC 3 cut(s) 98, 390, 802
AcuI CTGAAG 2 cut(s) 637, 906
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 4 cut(s) 59, 197, 294, 673
AfiI CCNNNNNNNGG 4 cut(s) 704, 705, 724, 937
AflIII ACRYGT 1 cut(s) 198
AjnI CCWGG 2 cut(s) 388, 962
AluBI AGCT 7 cut(s) 192, 222, 302, 446, 554, 651, 1014
AluI AGCT 7 cut(s) 192, 222, 302, 446, 554, 651, 1014
Alw21I GWGCWC 2 cut(s) 397, 777
AlwI GGATC 3 cut(s) 98, 390, 802
Ama87I CYCGRG 1 cut(s) 1009
AoxI GGCC 6 cut(s) 169, 339, 453, 695, 892, 960
ApeKI GCWGC 6 cut(s) 299, 787, 790, 793, 796, 864
ArsI GACNNNNNNTTYG 2 cut(s) 746, 778
AspA2I CCTAGG 1 cut(s) 368
AspLEI GCGC 1 cut(s) 970
AspS9I GGNCC 4 cut(s) 696, 714, 893, 928
AsuHPI GGTGA 6 cut(s) 65, 522, 528, 647, 697, 987
AvaI CYCGRG 1 cut(s) 1009
AvaII GGWCC 2 cut(s) 714, 928
AvrII CCTAGG 1 cut(s) 368
AxyI CCTNAGG 1 cut(s) 26
BauI CACGAG 1 cut(s) 396
Bbv12I GWGCWC 2 cut(s) 397, 777
BbvCI CCTCAGC 1 cut(s) 374
BbvI GCAGC 6 cut(s) 311, 774, 802, 805, 808, 876
BccI CCATC 8 cut(s) 131, 164, 221, 227, 541, 575, 673, 939
BcgI CGANNNNNNTGC 2 cut(s) 739, 773
BciT130I CCWGG 2 cut(s) 390, 964
BclI TGATCA 2 cut(s) 84, 637
BfaI CTAG 2 cut(s) 113, 369
BfmI CTRYAG 3 cut(s) 213, 469, 788
BisI GCNGC 7 cut(s) 275, 300, 788, 791, 794, 797, 865
BlnI CCTAGG 1 cut(s) 368
BlsI GCNGC 7 cut(s) 276, 301, 789, 792, 795, 798, 866
Bme1390I CCNGG 2 cut(s) 390, 964
Bme18I GGWCC 2 cut(s) 714, 928
BmeT110I CYCGRG 1 cut(s) 1009
BmgT120I GGNCC 4 cut(s) 696, 714, 893, 928
BmiI GGNNCC 3 cut(s) 336, 716, 929
BmrFI CCNGG 2 cut(s) 390, 964
BmsI GCATC 2 cut(s) 995, 1001
Bpu10I CCTNAGC 1 cut(s) 374
BpuEI CTTGAG 2 cut(s) 478, 941
BsaBI GATNNNNATC 1 cut(s) 89
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 5 cut(s) 166, 368, 547, 757, 963
BsaWI WCCGGW 1 cut(s) 565
BsaXI ACNNNNNCTCC 2 cut(s) 475, 505
Bsc4I CCNNNNNNNGG 4 cut(s) 704, 705, 724, 937
Bse118I RCCGGY 1 cut(s) 337
Bse1I ACTGG 2 cut(s) 895, 902
Bse21I CCTNAGG 1 cut(s) 26
Bse3DI GCAATG 1 cut(s) 151
Bse8I GATNNNNATC 1 cut(s) 89
BseBI CCWGG 2 cut(s) 390, 964
BseDI CCNNGG 5 cut(s) 166, 368, 547, 757, 963
BseGI GGATG 7 cut(s) 93, 238, 260, 312, 322, 684, 931
BseJI GATNNNNATC 1 cut(s) 89
BseLI CCNNNNNNNGG 4 cut(s) 704, 705, 724, 937
BseMI GCAATG 1 cut(s) 151
BseMII CTCAG 5 cut(s) 40, 292, 299, 365, 461
BseNI ACTGG 2 cut(s) 895, 902
BseRI GAGGAG 6 cut(s) 391, 490, 499, 502, 511, 617
BseXI GCAGC 6 cut(s) 311, 774, 802, 805, 808, 876
BseYI CCCAGC 1 cut(s) 302
BsgI GTGCAG 1 cut(s) 423
Bsh1285I CGRYCG 1 cut(s) 781
BshFI GGCC 6 cut(s) 171, 341, 455, 697, 894, 962
BsiEI CGRYCG 1 cut(s) 781
BsiHKAI GWGCWC 2 cut(s) 397, 777
BsiHKCI CYCGRG 1 cut(s) 1009
BsiSI CCGG 3 cut(s) 338, 356, 566
BslFI GGGAC 3 cut(s) 700, 890, 941
BslI CCNNNNNNNGG 4 cut(s) 704, 705, 724, 937
BsmFI GGGAC 3 cut(s) 700, 890, 941
BsmI GAATGC 1 cut(s) 411
BsnI GGCC 6 cut(s) 171, 341, 455, 697, 894, 962
BsoBI CYCGRG 1 cut(s) 1009
Bsp1286I GDGCHC 2 cut(s) 397, 777
Bsp1407I TGTACA 1 cut(s) 195
Bsp143I GATC 6 cut(s) 84, 90, 382, 515, 637, 807
BspACI CCGC 8 cut(s) 274, 289, 657, 781, 831, 867, 908, 935
BspANI GGCC 6 cut(s) 171, 341, 455, 697, 894, 962
BspCNI CTCAG 5 cut(s) 39, 291, 298, 366, 460
BspLI GGNNCC 3 cut(s) 336, 716, 929
BspMAI CTGCAG 2 cut(s) 473, 792
BspPI GGATC 3 cut(s) 98, 390, 802
BsrDI GCAATG 1 cut(s) 151
BsrFI RCCGGY 1 cut(s) 337
BsrGI TGTACA 1 cut(s) 195
BsrI ACTGG 2 cut(s) 895, 902
BssAI RCCGGY 1 cut(s) 337
BssECI CCNNGG 5 cut(s) 166, 368, 547, 757, 963
BssMI GATC 6 cut(s) 84, 90, 382, 515, 637, 807
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 396
BssT1I CCWWGG 2 cut(s) 166, 368
Bst2BI CACGAG 1 cut(s) 396
Bst2UI CCWGG 2 cut(s) 390, 964
Bst4CI ACNGT 1 cut(s) 572
Bst6I CTCTTC 2 cut(s) 246, 603
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 195
BstC8I GCNNGC 6 cut(s) 173, 433, 748, 785, 952, 972
BstDEI CTNAG 6 cut(s) 26, 278, 285, 374, 447, 555
BstDSI CCRYGG 1 cut(s) 547
BstF5I GGATG 7 cut(s) 93, 238, 260, 312, 322, 684, 931
BstHHI GCGC 1 cut(s) 970
BstKTI GATC 6 cut(s) 87, 93, 385, 518, 640, 810
BstMBI GATC 6 cut(s) 84, 90, 382, 515, 637, 807
BstMCI CGRYCG 1 cut(s) 781
BstMWI GCNNNNNNNGC 7 cut(s) 401, 452, 477, 663, 793, 796, 870
BstNI CCWGG 2 cut(s) 390, 964
BstNSI RCATGY 3 cut(s) 202, 619, 787
BstSCI CCNGG 2 cut(s) 388, 962
BstSFI CTRYAG 3 cut(s) 213, 469, 788
BstV1I GCAGC 6 cut(s) 311, 774, 802, 805, 808, 876
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
Bsu36I CCTNAGG 1 cut(s) 26
BsuRI GGCC 6 cut(s) 171, 341, 455, 697, 894, 962
BtgI CCRYGG 1 cut(s) 547
BtsCI GGATG 7 cut(s) 93, 238, 260, 312, 322, 684, 931
BtsI GCAGTG 1 cut(s) 981
BtsIMutI CAGTG 2 cut(s) 577, 981
Cac8I GCNNGC 6 cut(s) 173, 433, 748, 785, 952, 972
CfoI GCGC 1 cut(s) 970
Cfr10I RCCGGY 1 cut(s) 337
Cfr13I GGNCC 4 cut(s) 696, 714, 893, 928
Csp6I GTAC 4 cut(s) 58, 196, 293, 672
CviAII CATG 7 cut(s) 123, 199, 522, 616, 724, 730, 784
CviQI GTAC 4 cut(s) 58, 196, 293, 672
DdeI CTNAG 6 cut(s) 26, 278, 285, 374, 447, 555
DpnI GATC 6 cut(s) 86, 92, 384, 517, 639, 809
DpnII GATC 6 cut(s) 84, 90, 382, 515, 637, 807
DrdI GACNNNNNNGTC 1 cut(s) 28
DseDI GACNNNNNNGTC 1 cut(s) 28
Eam1104I CTCTTC 2 cut(s) 246, 603
EarI CTCTTC 2 cut(s) 246, 603
EciI GGCGGA 1 cut(s) 820
Eco130I CCWWGG 2 cut(s) 166, 368
Eco147I AGGCCT 2 cut(s) 455, 962
Eco47I GGWCC 2 cut(s) 714, 928
Eco57I CTGAAG 2 cut(s) 637, 906
Eco81I CCTNAGG 1 cut(s) 26
Eco88I CYCGRG 1 cut(s) 1009
EcoO109I RGGNCCY 1 cut(s) 714
EcoRII CCWGG 2 cut(s) 388, 962
EcoT14I CCWWGG 2 cut(s) 166, 368
ErhI CCWWGG 2 cut(s) 166, 368
FaeI CATG 7 cut(s) 126, 202, 525, 619, 727, 733, 787
FaqI GGGAC 3 cut(s) 700, 890, 941
FatI CATG 7 cut(s) 122, 198, 521, 615, 723, 729, 783
FauI CCCGC 2 cut(s) 282, 915
FbaI TGATCA 2 cut(s) 84, 637
Fnu4HI GCNGC 7 cut(s) 275, 300, 788, 791, 794, 797, 865
FokI GGATG 7 cut(s) 80, 245, 247, 319, 329, 691, 918
Fsp4HI GCNGC 7 cut(s) 275, 300, 788, 791, 794, 797, 865
FspBI CTAG 2 cut(s) 113, 369
GlaI GCGC 1 cut(s) 969
GluI GCNGC 7 cut(s) 275, 300, 788, 791, 794, 797, 865
GsaI CCCAGC 1 cut(s) 306
HaeIII GGCC 6 cut(s) 171, 341, 455, 697, 894, 962
HapII CCGG 3 cut(s) 338, 356, 566
HhaI GCGC 1 cut(s) 970
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 7 cut(s) 126, 202, 525, 619, 727, 733, 787
Hin6I GCGC 1 cut(s) 968
HinP1I GCGC 1 cut(s) 968
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HinfI GANTC 2 cut(s) 257, 323
HpaII CCGG 3 cut(s) 338, 356, 566
HphI GGTGA 6 cut(s) 65, 522, 528, 647, 697, 987
Hpy166II GTNNAC 1 cut(s) 312
Hpy188I TCNGA 3 cut(s) 10, 328, 450
Hpy188III TCNNGA 1 cut(s) 88
Hpy8I GTNNAC 1 cut(s) 312
Hpy99I CGWCG 2 cut(s) 65, 76
HpyAV CCTTC 5 cut(s) 44, 70, 362, 445, 822
HpyCH4III ACNGT 1 cut(s) 572
HpyCH4V TGCA 7 cut(s) 46, 404, 471, 723, 750, 790, 992
HpyF10VI GCNNNNNNNGC 7 cut(s) 401, 452, 477, 663, 793, 796, 870
HpyF3I CTNAG 6 cut(s) 26, 278, 285, 374, 447, 555
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 7 cut(s) 126, 202, 525, 619, 727, 733, 787
HspAI GCGC 1 cut(s) 968
Ksp22I TGATCA 2 cut(s) 84, 637
Kzo9I GATC 6 cut(s) 84, 90, 382, 515, 637, 807
LmnI GCTCC 4 cut(s) 408, 477, 551, 772
Lsp1109I GCAGC 6 cut(s) 311, 774, 802, 805, 808, 876
LweI GCATC 2 cut(s) 995, 1001
MaeI CTAG 2 cut(s) 113, 369
MaeIII GTNAC 3 cut(s) 201, 344, 644
MalI GATC 6 cut(s) 86, 92, 384, 517, 639, 809
MboI GATC 6 cut(s) 84, 90, 382, 515, 637, 807
MboII GAAGA 4 cut(s) 260, 263, 599, 620
MflI RGATCY 1 cut(s) 382
MhlI GDGCHC 2 cut(s) 397, 777
MluCI AATT 2 cut(s) 151, 874
MmeI TCCRAC 3 cut(s) 288, 351, 750
MseI TTAA 1 cut(s) 420
MslI CAYNNNNRTG 2 cut(s) 620, 728
MspA1I CMGCKG 4 cut(s) 289, 302, 657, 867
MspI CCGG 3 cut(s) 338, 356, 566
MspR9I CCNGG 2 cut(s) 390, 964
Mva1269I GAATGC 1 cut(s) 411
MvaI CCWGG 2 cut(s) 390, 964
MwoI GCNNNNNNNGC 7 cut(s) 401, 452, 477, 663, 793, 796, 870
NdeII GATC 6 cut(s) 84, 90, 382, 515, 637, 807
NlaIII CATG 7 cut(s) 126, 202, 525, 619, 727, 733, 787
NlaIV GGNNCC 3 cut(s) 336, 716, 929
NmeAIII GCCGAG 2 cut(s) 738, 796
NmuCI GTSAC 2 cut(s) 201, 644
NspI RCATGY 3 cut(s) 202, 619, 787
PaeI GCATGC 1 cut(s) 787
PaeR7I CTCGAG 1 cut(s) 1009
PceI AGGCCT 2 cut(s) 455, 962
PciI ACATGT 1 cut(s) 198
PctI GAATGC 1 cut(s) 411
PfeI GAWTC 2 cut(s) 257, 323
PkrI GCNGC 7 cut(s) 276, 301, 789, 792, 795, 798, 866
PpuMI RGGWCCY 1 cut(s) 714
PscI ACATGT 1 cut(s) 198
Psp5II RGGWCCY 1 cut(s) 714
Psp6I CCWGG 2 cut(s) 388, 962
PspFI CCCAGC 1 cut(s) 302
PspGI CCWGG 2 cut(s) 388, 962
PspN4I GGNNCC 3 cut(s) 336, 716, 929
PspPI GGNCC 4 cut(s) 696, 714, 893, 928
PspPPI RGGWCCY 1 cut(s) 714
PspXI VCTCGAGB 1 cut(s) 1009
PstI CTGCAG 2 cut(s) 473, 792
PsuI RGATCY 1 cut(s) 382
PvuII CAGCTG 1 cut(s) 302
RsaI GTAC 4 cut(s) 59, 197, 294, 673
RsaNI GTAC 4 cut(s) 58, 196, 293, 672
RseI CAYNNNNRTG 2 cut(s) 620, 728
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 7 cut(s) 275, 300, 788, 791, 794, 797, 865
Sau3AI GATC 6 cut(s) 84, 90, 382, 515, 637, 807
Sau96I GGNCC 4 cut(s) 696, 714, 893, 928
ScrFI CCNGG 2 cut(s) 390, 964
SduI GDGCHC 2 cut(s) 397, 777
SfaNI GCATC 2 cut(s) 995, 1001
SfcI CTRYAG 3 cut(s) 213, 469, 788
Sfr274I CTCGAG 1 cut(s) 1009
SinI GGWCC 2 cut(s) 714, 928
SlaI CTCGAG 1 cut(s) 1009
SmiMI CAYNNNNRTG 2 cut(s) 620, 728
SmlI CTYRAG 3 cut(s) 457, 956, 1009
SmoI CTYRAG 3 cut(s) 457, 956, 1009
SphI GCATGC 1 cut(s) 787
Sse9I AATT 2 cut(s) 151, 874
SseBI AGGCCT 2 cut(s) 455, 962
SsiI CCGC 8 cut(s) 274, 289, 657, 781, 831, 867, 908, 935
SspMI CTAG 2 cut(s) 113, 369
StuI AGGCCT 2 cut(s) 455, 962
StyD4I CCNGG 2 cut(s) 388, 962
StyI CCWWGG 2 cut(s) 166, 368
TaaI ACNGT 1 cut(s) 572
TaqI TCGA 3 cut(s) 765, 843, 1010
TasI AATT 2 cut(s) 151, 874
TatI WGTACW 1 cut(s) 195
TauI GCSGC 1 cut(s) 277
TfiI GAWTC 2 cut(s) 257, 323
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TscAI CASTG 2 cut(s) 577, 981
TseFI GTSAC 2 cut(s) 201, 644
TseI GCWGC 6 cut(s) 299, 787, 790, 793, 796, 864
Tsp45I GTSAC 2 cut(s) 201, 644
TspDTI ATGAA 4 cut(s) 143, 261, 456, 638
TspGWI ACGGA 3 cut(s) 329, 347, 564
TspRI CASTG 2 cut(s) 577, 981
VpaK11BI GGWCC 2 cut(s) 714, 928
XceI RCATGY 3 cut(s) 202, 619, 787
XcmI CCANNNNNNNNNTGG 1 cut(s) 179
XhoI CTCGAG 1 cut(s) 1009
XmaJI CCTAGG 1 cut(s) 368
XspI CTAG 2 cut(s) 113, 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.