Rroxscaffold_6G00396570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0010914
Physical Location & Seq
Forward (+)
18094395 .. 18096731
2337 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00396570.1

Sequence Viewer

Length: 1092 bp
ATGCTCGATCATATGGCGTCTGATGAGAGTATGACCCTCAGGTCTTGTATCTCTATGCAGGAAGGTGAGTACGACGATTATACCGACGAAGGGTATGATCAGGATCAGCCTCATCAGCACTTGTCTAGGTTGTCCATGTGTACCAGCAATTCCATCTATGGTGATGACCAGATGAACGATGATGGTGGCAGTGGCAATTCCATCTACTACCAAGGCCTACAAGAGAATGGTATGAGCATGTACATGTCACTCTTGTCTATAGACAGCTTTGATGGGGATGGGGATGTTGATGAAGAAGAGGAATCATCTACCAAGAAGCGGCTCAGTTCTCAGCTGGTACTCGCAGCTGGGATGTCAACGGAGGACGATTCCGACAAGGAACTGGCGTGTTACTCTCTTCCGGCGACACCCCCTAGGCTGAGGAGGGATCTGCCTGGTGCTGGTGGTGCAGGGAGCATTCTTATTAACAAGATGCATCCCTATTCTAGGGTGGACAAAGAGTATGCGAGCGAAAATGAAGCTCAGAAGGCCTTGAGTGATGACTGCAGGAGGAGCAGGAGGAGGAACAGGAGGAGAATGATGAAGAACAGATCATCATGGCTATCACCATCACCATTCCACCACGGAGCTAAGACGACACCGGACAGTGATGATGGAGAAGATGAGGACAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGCATGTATATGAATGTGTGTGGTGATCATTGTCACAGCTTCAGCGGAGAGAGCGAGGGTACGGGGATGGTGGTGATAGCAAGGCCCAAAGGAGGGAACAGGTCCCTCTGCATGGACATGGAGGAAGTCAAGGCTTGCAAAGACCTCGGCTTCGAGTTGGAGCACGACCGCATGCTGCAGCAGCAGCAGGAGATGATCCCTTCTCGGCTTTCTCTATCCGCCACCACCCTCGACACTAACTACACCACCAGCAGCGGTGGCAATTCCCCTATTGCCAACTGGCCCATTTCCAGTCCCGGGGACCATCCGCAGGAGGTCAAGGCTCGCCTCAAGGCCTGGGCGCAGGCAGTGGCTCTGGCATCTGCATCACCCACAAGGCACTCGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

363

Amino Acids

40.34

Weight (kDa)

4.61

Isoelectric Point (pI)

81.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010914)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46940 AT3G62070 AT4G01670
fragaria_vesca FvH4_1g26130
malus_domestica MD00G1137300.v1.1
prunus_persica Prupe.3G001400_v2.0.a1
pyrus_communis pycom03g07920
rosa_chinensis RchiOBHm_Chr3g0485631
rosa_laevigata RLG00000023140
rosa_multiflora Rmu_sc0001272.1_g000004 Rmu_sc0004711.1_g000006 Rmu_sc0036906.1_g000001
rosa_roxburghii Rroxscaffold_6G00396570 Rroxscaffold_6G00396880
rosa_rugosa Rorug03G0220300
rosa_samantha Rh3AG269000 Rh3BG304600 Rh3CG303200 Rh3DG299500
rosa_wichuraiana Rw3G023990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 40
AciI CCGC 6 cut(s) 319, 747, 871, 921, 957, 1010
AclWI GGATC 3 cut(s) 111, 435, 892
AcuI CTGAAG 1 cut(s) 727
AcyI GRCGYC 1 cut(s) 17
AfaI GTAC 5 cut(s) 71, 142, 242, 339, 763
AfiI CCNNNNNNNGG 9 cut(s) 90, 318, 440, 486, 794, 795, 814, 999, 1012
AflIII ACRYGT 1 cut(s) 243
AjnI CCWGG 2 cut(s) 433, 1037
AluBI AGCT 7 cut(s) 267, 334, 347, 521, 629, 741, 1089
AluI AGCT 7 cut(s) 267, 334, 347, 521, 629, 741, 1089
Alw21I GWGCWC 1 cut(s) 867
AlwI GGATC 3 cut(s) 111, 435, 892
Ama87I CYCGRG 2 cut(s) 998, 1084
AoxI GGCC 5 cut(s) 214, 528, 785, 983, 1035
ApeKI GCWGC 6 cut(s) 344, 877, 880, 883, 886, 954
ArsI GACNNNNNNTTYG 2 cut(s) 836, 868
AspA2I CCTAGG 1 cut(s) 413
AspLEI GCGC 1 cut(s) 1045
AspS9I GGNCC 4 cut(s) 786, 804, 984, 1003
AsuC2I CCSGG 2 cut(s) 999, 1000
AsuHPI GGTGA 7 cut(s) 77, 173, 597, 603, 737, 787, 1062
AvaI CYCGRG 2 cut(s) 998, 1084
AvaII GGWCC 2 cut(s) 804, 1003
AvrII CCTAGG 1 cut(s) 413
AxyI CCTNAGG 1 cut(s) 38
Bbv12I GWGCWC 1 cut(s) 867
BbvCI CCTCAGC 1 cut(s) 419
BbvI GCAGC 6 cut(s) 356, 864, 892, 895, 898, 966
BccI CCATC 9 cut(s) 161, 176, 209, 266, 272, 616, 647, 763, 1014
BcgI CGANNNNNNTGC 2 cut(s) 829, 863
BciT130I CCWGG 2 cut(s) 435, 1039
BclI TGATCA 2 cut(s) 97, 727
BcnI CCSGG 2 cut(s) 999, 1000
BfaI CTAG 3 cut(s) 126, 414, 486
BfmI CTRYAG 3 cut(s) 258, 544, 878
BisI GCNGC 7 cut(s) 320, 345, 878, 881, 884, 887, 955
BlnI CCTAGG 1 cut(s) 413
BlsI GCNGC 7 cut(s) 321, 346, 879, 882, 885, 888, 956
Bme1390I CCNGG 4 cut(s) 435, 999, 1000, 1039
Bme18I GGWCC 2 cut(s) 804, 1003
BmeT110I CYCGRG 2 cut(s) 998, 1084
BmgT120I GGNCC 4 cut(s) 786, 804, 984, 1003
BmiI GGNNCC 2 cut(s) 806, 1004
BmrFI CCNGG 4 cut(s) 435, 999, 1000, 1039
BmsI GCATC 4 cut(s) 462, 484, 1070, 1076
Bpu10I CCTNAGC 1 cut(s) 419
BpuEI CTTGAG 2 cut(s) 553, 1016
BpuMI CCSGG 2 cut(s) 999, 1000
BsaBI GATNNNNATC 1 cut(s) 102
BsaHI GRCGYC 1 cut(s) 17
BsaJI CCNNGG 7 cut(s) 211, 413, 622, 847, 998, 999, 1038
BsaWI WCCGGW 1 cut(s) 640
BsaXI ACNNNNNCTCC 2 cut(s) 692, 722
Bsc4I CCNNNNNNNGG 9 cut(s) 90, 318, 440, 486, 794, 795, 814, 999, 1012
Bse1I ACTGG 3 cut(s) 387, 986, 993
Bse21I CCTNAGG 1 cut(s) 38
Bse8I GATNNNNATC 1 cut(s) 102
BseBI CCWGG 2 cut(s) 435, 1039
BseDI CCNNGG 7 cut(s) 211, 413, 622, 847, 998, 999, 1038
BseGI GGATG 6 cut(s) 283, 289, 357, 475, 774, 1006
BseJI GATNNNNATC 1 cut(s) 102
BseLI CCNNNNNNNGG 9 cut(s) 90, 318, 440, 486, 794, 795, 814, 999, 1012
BseMII CTCAG 5 cut(s) 52, 337, 344, 410, 536
BseNI ACTGG 3 cut(s) 387, 986, 993
BseXI GCAGC 6 cut(s) 356, 864, 892, 895, 898, 966
BseYI CCCAGC 1 cut(s) 347
BsgI GTGCAG 1 cut(s) 468
Bsh1285I CGRYCG 1 cut(s) 871
BshFI GGCC 5 cut(s) 216, 530, 787, 985, 1037
BsiEI CGRYCG 1 cut(s) 871
BsiHKAI GWGCWC 1 cut(s) 867
BsiHKCI CYCGRG 2 cut(s) 998, 1084
BsiSI CCGG 3 cut(s) 401, 641, 999
BslFI GGGAC 3 cut(s) 790, 981, 1016
BslI CCNNNNNNNGG 9 cut(s) 90, 318, 440, 486, 794, 795, 814, 999, 1012
BsmFI GGGAC 3 cut(s) 790, 981, 1016
BsmI GAATGC 1 cut(s) 456
BsnI GGCC 5 cut(s) 216, 530, 787, 985, 1037
BsoBI CYCGRG 2 cut(s) 998, 1084
Bsp1286I GDGCHC 1 cut(s) 867
Bsp1407I TGTACA 1 cut(s) 240
Bsp143I GATC 7 cut(s) 7, 97, 103, 427, 590, 727, 897
BspACI CCGC 6 cut(s) 319, 747, 871, 921, 957, 1010
BspANI GGCC 5 cut(s) 216, 530, 787, 985, 1037
BspCNI CTCAG 5 cut(s) 51, 336, 343, 411, 535
BspLI GGNNCC 2 cut(s) 806, 1004
BspMAI CTGCAG 2 cut(s) 548, 882
BspPI GGATC 3 cut(s) 111, 435, 892
BsrGI TGTACA 1 cut(s) 240
BsrI ACTGG 3 cut(s) 387, 986, 993
BssECI CCNNGG 7 cut(s) 211, 413, 622, 847, 998, 999, 1038
BssMI GATC 7 cut(s) 7, 97, 103, 427, 590, 727, 897
BssNI GRCGYC 1 cut(s) 17
BssT1I CCWWGG 2 cut(s) 211, 413
Bst2UI CCWGG 2 cut(s) 435, 1039
Bst4CI ACNGT 1 cut(s) 647
Bst6I CTCTTC 2 cut(s) 291, 402
BstACI GRCGYC 1 cut(s) 17
BstAUI TGTACA 1 cut(s) 240
BstC8I GCNNGC 5 cut(s) 508, 838, 875, 1027, 1047
BstDEI CTNAG 6 cut(s) 38, 323, 330, 419, 522, 630
BstDSI CCRYGG 1 cut(s) 622
BstENI CCTNNNNNAGG 1 cut(s) 484
BstF5I GGATG 6 cut(s) 283, 289, 357, 475, 774, 1006
BstHHI GCGC 1 cut(s) 1045
BstKTI GATC 7 cut(s) 10, 100, 106, 430, 593, 730, 900
BstMBI GATC 7 cut(s) 7, 97, 103, 427, 590, 727, 897
BstMCI CGRYCG 1 cut(s) 871
BstMWI GCNNNNNNNGC 8 cut(s) 115, 446, 527, 552, 753, 883, 886, 960
BstNI CCWGG 2 cut(s) 435, 1039
BstNSI RCATGY 4 cut(s) 241, 247, 709, 877
BstSCI CCNGG 4 cut(s) 433, 997, 998, 1037
BstSFI CTRYAG 3 cut(s) 258, 544, 878
BstV1I GCAGC 6 cut(s) 356, 864, 892, 895, 898, 966
BstX2I RGATCY 1 cut(s) 427
BstYI RGATCY 1 cut(s) 427
Bsu36I CCTNAGG 1 cut(s) 38
BsuRI GGCC 5 cut(s) 216, 530, 787, 985, 1037
BtgI CCRYGG 1 cut(s) 622
BtsCI GGATG 6 cut(s) 283, 289, 357, 475, 774, 1006
BtsI GCAGTG 2 cut(s) 196, 1056
BtsIMutI CAGTG 3 cut(s) 196, 652, 1056
Cac8I GCNNGC 5 cut(s) 508, 838, 875, 1027, 1047
CfoI GCGC 1 cut(s) 1045
Cfr13I GGNCC 4 cut(s) 786, 804, 984, 1003
Cfr9I CCCGGG 1 cut(s) 998
CseI GACGC 1 cut(s) 6
Csp6I GTAC 5 cut(s) 70, 141, 241, 338, 762
CviAII CATG 8 cut(s) 136, 238, 244, 597, 706, 814, 820, 874
CviQI GTAC 5 cut(s) 70, 141, 241, 338, 762
DdeI CTNAG 6 cut(s) 38, 323, 330, 419, 522, 630
DpnI GATC 7 cut(s) 9, 99, 105, 429, 592, 729, 899
DpnII GATC 7 cut(s) 7, 97, 103, 427, 590, 727, 897
DrdI GACNNNNNNGTC 1 cut(s) 40
DseDI GACNNNNNNGTC 1 cut(s) 40
Eam1104I CTCTTC 2 cut(s) 291, 402
EarI CTCTTC 2 cut(s) 291, 402
EciI GGCGGA 1 cut(s) 910
Eco130I CCWWGG 2 cut(s) 211, 413
Eco147I AGGCCT 3 cut(s) 216, 530, 1037
Eco47I GGWCC 2 cut(s) 804, 1003
Eco57I CTGAAG 1 cut(s) 727
Eco81I CCTNAGG 1 cut(s) 38
Eco88I CYCGRG 2 cut(s) 998, 1084
EcoNI CCTNNNNNAGG 1 cut(s) 484
EcoO109I RGGNCCY 1 cut(s) 804
EcoRII CCWGG 2 cut(s) 433, 1037
EcoT14I CCWWGG 2 cut(s) 211, 413
EcoT22I ATGCAT 1 cut(s) 477
ErhI CCWWGG 2 cut(s) 211, 413
FaeI CATG 8 cut(s) 139, 241, 247, 600, 709, 817, 823, 877
FaqI GGGAC 3 cut(s) 790, 981, 1016
FatI CATG 8 cut(s) 135, 237, 243, 596, 705, 813, 819, 873
FauNDI CATATG 1 cut(s) 12
FbaI TGATCA 2 cut(s) 97, 727
Fnu4HI GCNGC 7 cut(s) 320, 345, 878, 881, 884, 887, 955
FokI GGATG 6 cut(s) 290, 296, 364, 462, 781, 993
Fsp4HI GCNGC 7 cut(s) 320, 345, 878, 881, 884, 887, 955
FspBI CTAG 3 cut(s) 126, 414, 486
GlaI GCGC 1 cut(s) 1044
GluI GCNGC 7 cut(s) 320, 345, 878, 881, 884, 887, 955
GsaI CCCAGC 1 cut(s) 351
HaeIII GGCC 5 cut(s) 216, 530, 787, 985, 1037
HapII CCGG 3 cut(s) 401, 641, 999
HgaI GACGC 1 cut(s) 6
HhaI GCGC 1 cut(s) 1045
Hin1I GRCGYC 1 cut(s) 17
Hin1II CATG 8 cut(s) 139, 241, 247, 600, 709, 817, 823, 877
Hin6I GCGC 1 cut(s) 1043
HinP1I GCGC 1 cut(s) 1043
HincII GTYRAC 1 cut(s) 357
HindII GTYRAC 1 cut(s) 357
HinfI GANTC 2 cut(s) 302, 368
HpaII CCGG 3 cut(s) 401, 641, 999
HphI GGTGA 7 cut(s) 77, 173, 597, 603, 737, 787, 1062
Hpy166II GTNNAC 3 cut(s) 141, 357, 493
Hpy188I TCNGA 3 cut(s) 22, 373, 525
Hpy188III TCNNGA 1 cut(s) 101
Hpy8I GTNNAC 3 cut(s) 141, 357, 493
Hpy99I CGWCG 2 cut(s) 77, 89
HpyAV CCTTC 4 cut(s) 56, 83, 520, 912
HpyCH4III ACNGT 1 cut(s) 647
HpyCH4V TGCA 8 cut(s) 58, 449, 475, 546, 813, 840, 880, 1067
HpyF10VI GCNNNNNNNGC 8 cut(s) 115, 446, 527, 552, 753, 883, 886, 960
HpyF3I CTNAG 6 cut(s) 38, 323, 330, 419, 522, 630
Hsp92I GRCGYC 1 cut(s) 17
Hsp92II CATG 8 cut(s) 139, 241, 247, 600, 709, 817, 823, 877
HspAI GCGC 1 cut(s) 1043
Ksp22I TGATCA 2 cut(s) 97, 727
Kzo9I GATC 7 cut(s) 7, 97, 103, 427, 590, 727, 897
LmnI GCTCC 4 cut(s) 453, 552, 626, 862
Lsp1109I GCAGC 6 cut(s) 356, 864, 892, 895, 898, 966
LweI GCATC 4 cut(s) 462, 484, 1070, 1076
MaeI CTAG 3 cut(s) 126, 414, 486
MaeIII GTNAC 3 cut(s) 246, 389, 734
MalI GATC 7 cut(s) 9, 99, 105, 429, 592, 729, 899
MboI GATC 7 cut(s) 7, 97, 103, 427, 590, 727, 897
MboII GAAGA 5 cut(s) 305, 308, 389, 595, 671
MflI RGATCY 1 cut(s) 427
MhlI GDGCHC 1 cut(s) 867
MluCI AATT 3 cut(s) 148, 196, 964
MmeI TCCRAC 2 cut(s) 396, 840
Mph1103I ATGCAT 1 cut(s) 477
MseI TTAA 1 cut(s) 465
MslI CAYNNNNRTG 3 cut(s) 242, 710, 818
MspA1I CMGCKG 4 cut(s) 334, 347, 747, 957
MspI CCGG 3 cut(s) 401, 641, 999
MspR9I CCNGG 4 cut(s) 435, 999, 1000, 1039
Mva1269I GAATGC 1 cut(s) 456
MvaI CCWGG 2 cut(s) 435, 1039
MwoI GCNNNNNNNGC 8 cut(s) 115, 446, 527, 552, 753, 883, 886, 960
NciI CCSGG 2 cut(s) 999, 1000
NdeI CATATG 1 cut(s) 12
NdeII GATC 7 cut(s) 7, 97, 103, 427, 590, 727, 897
NlaIII CATG 8 cut(s) 139, 241, 247, 600, 709, 817, 823, 877
NlaIV GGNNCC 2 cut(s) 806, 1004
NmeAIII GCCGAG 2 cut(s) 828, 886
NmuCI GTSAC 2 cut(s) 246, 734
NsiI ATGCAT 1 cut(s) 477
NspI RCATGY 4 cut(s) 241, 247, 709, 877
PaeI GCATGC 1 cut(s) 877
PaeR7I CTCGAG 1 cut(s) 1084
PceI AGGCCT 3 cut(s) 216, 530, 1037
PciI ACATGT 1 cut(s) 243
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PctI GAATGC 1 cut(s) 456
PfeI GAWTC 2 cut(s) 302, 368
PkrI GCNGC 7 cut(s) 321, 346, 879, 882, 885, 888, 956
PpuMI RGGWCCY 1 cut(s) 804
PscI ACATGT 1 cut(s) 243
Psp5II RGGWCCY 1 cut(s) 804
Psp6I CCWGG 2 cut(s) 433, 1037
PspFI CCCAGC 1 cut(s) 347
PspGI CCWGG 2 cut(s) 433, 1037
PspN4I GGNNCC 2 cut(s) 806, 1004
PspPI GGNCC 4 cut(s) 786, 804, 984, 1003
PspPPI RGGWCCY 1 cut(s) 804
PspXI VCTCGAGB 1 cut(s) 1084
PstI CTGCAG 2 cut(s) 548, 882
PsuI RGATCY 1 cut(s) 427
PvuII CAGCTG 2 cut(s) 334, 347
RsaI GTAC 5 cut(s) 71, 142, 242, 339, 763
RsaNI GTAC 5 cut(s) 70, 141, 241, 338, 762
RseI CAYNNNNRTG 3 cut(s) 242, 710, 818
SaqAI TTAA 1 cut(s) 465
SatI GCNGC 7 cut(s) 320, 345, 878, 881, 884, 887, 955
Sau3AI GATC 7 cut(s) 7, 97, 103, 427, 590, 727, 897
Sau96I GGNCC 4 cut(s) 786, 804, 984, 1003
ScrFI CCNGG 4 cut(s) 435, 999, 1000, 1039
SduI GDGCHC 1 cut(s) 867
SfaNI GCATC 4 cut(s) 462, 484, 1070, 1076
SfcI CTRYAG 3 cut(s) 258, 544, 878
Sfr274I CTCGAG 1 cut(s) 1084
SinI GGWCC 2 cut(s) 804, 1003
SlaI CTCGAG 1 cut(s) 1084
SmaI CCCGGG 1 cut(s) 1000
SmiMI CAYNNNNRTG 3 cut(s) 242, 710, 818
SmlI CTYRAG 3 cut(s) 532, 1031, 1084
SmoI CTYRAG 3 cut(s) 532, 1031, 1084
SphI GCATGC 1 cut(s) 877
Sse9I AATT 3 cut(s) 148, 196, 964
SseBI AGGCCT 3 cut(s) 216, 530, 1037
SsiI CCGC 6 cut(s) 319, 747, 871, 921, 957, 1010
SspMI CTAG 3 cut(s) 126, 414, 486
StuI AGGCCT 3 cut(s) 216, 530, 1037
StyD4I CCNGG 4 cut(s) 433, 997, 998, 1037
StyI CCWWGG 2 cut(s) 211, 413
TaaI ACNGT 1 cut(s) 647
TaqI TCGA 4 cut(s) 6, 855, 933, 1085
TasI AATT 3 cut(s) 148, 196, 964
TatI WGTACW 1 cut(s) 240
TauI GCSGC 1 cut(s) 322
TfiI GAWTC 2 cut(s) 302, 368
Tru1I TTAA 1 cut(s) 465
Tru9I TTAA 1 cut(s) 465
TscAI CASTG 3 cut(s) 196, 652, 1056
TseFI GTSAC 2 cut(s) 246, 734
TseI GCWGC 6 cut(s) 344, 877, 880, 883, 886, 954
Tsp45I GTSAC 2 cut(s) 246, 734
TspDTI ATGAA 5 cut(s) 188, 306, 531, 596, 728
TspGWI ACGGA 2 cut(s) 374, 639
TspMI CCCGGG 1 cut(s) 998
TspRI CASTG 3 cut(s) 196, 652, 1056
VpaK11BI GGWCC 2 cut(s) 804, 1003
XagI CCTNNNNNAGG 1 cut(s) 484
XceI RCATGY 4 cut(s) 241, 247, 709, 877
XhoI CTCGAG 1 cut(s) 1084
XmaI CCCGGG 1 cut(s) 998
XmaJI CCTAGG 1 cut(s) 413
XspI CTAG 3 cut(s) 126, 414, 486
Zsp2I ATGCAT 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.