MD00G1137300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0010914
Physical Location & Seq
Forward (+)
29807025 .. 29808831
1807 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1137300.v1.1.491

Sequence Viewer

Length: 990 bp
ATGGCGTCAGACGATAGTATGACCATCCGGTCTTGTATCTCCATGCAGGAAGACGAGTACTATGAGGATACCGATGATTGGTTTGATCAACTGCCCCATCCCCATAACTTGTCTAGGCTATCCATGTGTTCCGTATGTGGTACCGATCGTGAGGATGTTATGGATTATGATAGTAATCATCATGATCATGGTAACTACTACTACCATGGCCAAGATAAATCCCCAGAAGACACTACCGCTGGCATGAATATGTTCATGTCACTCTTGTCCATGGAAAGCTTTGACCGGGACGTACTGGAAGTTGGGCTGTCATCCGACTCCGACAAGGAACCCAGCTCTTACTCACTTCCGGCAACGCCCCCAAGACGAAGGGCTCCAGGTGGAATGTCCCATTACAAGCATCCCAATTCCATGCTGCTTAAAGAGTACGCCAGCGAGAATGAAGCTCAAACAGTCATGGGCAACATTTCCAGGAAGAGCAGGAGGAGAACAAGAAGGACGCGAATCATCAACAATCGACACTCATGGCTATCGGCATCACCAGACAGAAGAAACATAGCTAAAAAGAAAGATGATGATGATGATGATGACACGAAGGACGCCAATAATACGATGATGGCGCGGACGGATAGTAGTCAGCTTGGCCATTGCCATAGCTTTAGCGGGGAGAGTGAGGGTGGGAGTGTGGTAGTGATAACGAGGCCCAAGGGAGGGAGGAGGTCCTTGTGCATGGACATGGAGGAAGTCAAGGCTTGCAGAGATCTTGGGTTTGAGTTGGAGCACCAGCATATGCTGCACGAGATGCCCCATCATCTTTCTCGCTCTGCCTCCACCCTTGACACCAACACTACCTGCAGTAGCGGCGGCAATTCCCCCATCGCCAACTGGCGCATCTCCAGCCCCGGTGACGACCCACGGGAAGTGAAGGCTCGAATCAAGGTCTGGGCGCAGGCTGTGGCATTGGCATCCACATCACGACAAGGCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

330

Amino Acids

37.08

Weight (kDa)

5.71

Isoelectric Point (pI)

63.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010914)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46940 AT3G62070 AT4G01670
fragaria_vesca FvH4_1g26130
malus_domestica MD00G1137300.v1.1
prunus_persica Prupe.3G001400_v2.0.a1
pyrus_communis pycom03g07920
rosa_chinensis RchiOBHm_Chr3g0485631
rosa_laevigata RLG00000023140
rosa_multiflora Rmu_sc0001272.1_g000004 Rmu_sc0004711.1_g000006 Rmu_sc0036906.1_g000001
rosa_roxburghii Rroxscaffold_6G00396570 Rroxscaffold_6G00396880
rosa_rugosa Rorug03G0220300
rosa_samantha Rh3AG269000 Rh3BG304600 Rh3CG303200 Rh3DG299500
rosa_wichuraiana Rw3G023990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 28
Acc36I ACCTGC 1 cut(s) 860
Acc65I GGTACC 1 cut(s) 140
AccB1I GGYRCC 1 cut(s) 140
AccII CGCG 2 cut(s) 502, 622
AciI CCGC 5 cut(s) 237, 622, 663, 861, 864
AcoI YGGCCR 2 cut(s) 208, 643
AcyI GRCGYC 2 cut(s) 5, 600
AfaI GTAC 4 cut(s) 59, 142, 294, 428
AfiI CCNNNNNNNGG 3 cut(s) 78, 710, 711
AjnI CCWGG 2 cut(s) 376, 470
AluBI AGCT 6 cut(s) 279, 336, 446, 560, 640, 657
AluI AGCT 6 cut(s) 279, 336, 446, 560, 640, 657
Alw21I GWGCWC 1 cut(s) 783
AoxI GGCC 3 cut(s) 208, 643, 701
ApeKI GCWGC 2 cut(s) 415, 793
Asp700I GAANNNNTTC 1 cut(s) 251
Asp718I GGTACC 1 cut(s) 140
AspLEI GCGC 3 cut(s) 622, 891, 949
AspS9I GGNCC 2 cut(s) 702, 720
AsuC2I CCSGG 2 cut(s) 287, 903
AsuHPI GGTGA 2 cut(s) 531, 917
AvaII GGWCC 1 cut(s) 720
BalI TGGCCA 2 cut(s) 210, 645
BanI GGYRCC 1 cut(s) 140
BanII GRGCYC 1 cut(s) 376
BauI CACGAG 1 cut(s) 797
BbsI GAAGAC 2 cut(s) 57, 234
Bbv12I GWGCWC 1 cut(s) 783
BbvI GCAGC 2 cut(s) 402, 780
BccI CCATC 5 cut(s) 32, 105, 610, 816, 884
BciT130I CCWGG 2 cut(s) 378, 472
BciVI GTATCC 1 cut(s) 61
BclI TGATCA 2 cut(s) 85, 184
BcnI CCSGG 2 cut(s) 287, 903
BfaI CTAG 1 cut(s) 114
BfmI CTRYAG 1 cut(s) 853
BfuAI ACCTGC 1 cut(s) 860
BfuI GTATCC 1 cut(s) 61
BglII AGATCT 1 cut(s) 760
BisI GCNGC 4 cut(s) 416, 794, 862, 865
BlsI GCNGC 4 cut(s) 417, 795, 863, 866
BmcAI AGTACT 1 cut(s) 59
Bme1390I CCNGG 4 cut(s) 287, 378, 472, 903
Bme18I GGWCC 1 cut(s) 720
BmgT120I GGNCC 2 cut(s) 702, 720
BmiI GGNNCC 3 cut(s) 142, 330, 375
BmrFI CCNGG 4 cut(s) 287, 378, 472, 903
BmsI GCATC 5 cut(s) 409, 545, 792, 900, 974
BpiI GAAGAC 2 cut(s) 57, 234
BpmI CTGGAG 2 cut(s) 360, 880
BpuMI CCSGG 2 cut(s) 287, 903
BsaBI GATNNNNATC 1 cut(s) 174
BsaHI GRCGYC 2 cut(s) 5, 600
BsaJI CCNNGG 5 cut(s) 205, 270, 705, 901, 914
BsaWI WCCGGW 1 cut(s) 27
Bsc4I CCNNNNNNNGG 3 cut(s) 78, 710, 711
Bse1I ACTGG 2 cut(s) 300, 890
Bse3DI GCAATG 1 cut(s) 646
Bse8I GATNNNNATC 1 cut(s) 174
BseBI CCWGG 2 cut(s) 378, 472
BseDI CCNNGG 5 cut(s) 205, 270, 705, 901, 914
BseGI GGATG 6 cut(s) 24, 97, 160, 311, 400, 965
BseJI GATNNNNATC 1 cut(s) 174
BseLI CCNNNNNNNGG 3 cut(s) 78, 710, 711
BseMI GCAATG 1 cut(s) 646
BseNI ACTGG 2 cut(s) 300, 890
BseRI GAGGAG 2 cut(s) 499, 730
BseXI GCAGC 2 cut(s) 402, 780
BseYI CCCAGC 1 cut(s) 332
BsgI GTGCAG 1 cut(s) 779
Bsh1236I CGCG 2 cut(s) 502, 622
Bsh1285I CGRYCG 1 cut(s) 148
BshFI GGCC 3 cut(s) 210, 645, 703
BshNI GGYRCC 1 cut(s) 140
BsiEI CGRYCG 1 cut(s) 148
BsiHKAI GWGCWC 1 cut(s) 783
BsiSI CCGG 4 cut(s) 28, 286, 350, 903
BslFI GGGAC 2 cut(s) 302, 373
BslI CCNNNNNNNGG 3 cut(s) 78, 710, 711
BsmFI GGGAC 2 cut(s) 302, 373
BsnI GGCC 3 cut(s) 210, 645, 703
Bsp1286I GDGCHC 2 cut(s) 376, 783
Bsp143I GATC 4 cut(s) 85, 145, 184, 760
Bsp19I CCATGG 2 cut(s) 205, 270
BspACI CCGC 5 cut(s) 237, 622, 663, 861, 864
BspANI GGCC 3 cut(s) 210, 645, 703
BspFNI CGCG 2 cut(s) 502, 622
BspHI TCATGA 1 cut(s) 181
BspLI GGNNCC 3 cut(s) 142, 330, 375
BspMAI CTGCAG 1 cut(s) 857
BspMI ACCTGC 1 cut(s) 860
BspQI GCTCTTC 1 cut(s) 470
BspT107I GGYRCC 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 646
BsrI ACTGG 2 cut(s) 300, 890
BssECI CCNNGG 5 cut(s) 205, 270, 705, 901, 914
BssMI GATC 4 cut(s) 85, 145, 184, 760
BssNI GRCGYC 2 cut(s) 5, 600
BssSI CACGAG 1 cut(s) 797
BssT1I CCWWGG 3 cut(s) 205, 270, 705
Bst2BI CACGAG 1 cut(s) 797
Bst2UI CCWGG 2 cut(s) 378, 472
Bst4CI ACNGT 1 cut(s) 454
Bst6I CTCTTC 1 cut(s) 470
BstACI GRCGYC 2 cut(s) 5, 600
BstAPI GCANNNNNTGC 2 cut(s) 793, 802
BstC8I GCNNGC 4 cut(s) 241, 433, 754, 951
BstDSI CCRYGG 3 cut(s) 205, 270, 914
BstF5I GGATG 6 cut(s) 24, 97, 160, 311, 400, 965
BstFNI CGCG 2 cut(s) 502, 622
BstHHI GCGC 3 cut(s) 622, 891, 949
BstKTI GATC 4 cut(s) 88, 148, 187, 763
BstMBI GATC 4 cut(s) 85, 145, 184, 760
BstMCI CGRYCG 1 cut(s) 148
BstMWI GCNNNNNNNGC 4 cut(s) 793, 802, 861, 897
BstNI CCWGG 2 cut(s) 378, 472
BstSCI CCNGG 4 cut(s) 285, 376, 470, 901
BstSFI CTRYAG 1 cut(s) 853
BstUI CGCG 2 cut(s) 502, 622
BstV1I GCAGC 2 cut(s) 402, 780
BstV2I GAAGAC 2 cut(s) 57, 234
BstX2I RGATCY 1 cut(s) 760
BstYI RGATCY 1 cut(s) 760
BsuI GTATCC 1 cut(s) 61
BsuRI GGCC 3 cut(s) 210, 645, 703
BtgI CCRYGG 3 cut(s) 205, 270, 914
BtgZI GCGATG 1 cut(s) 862
BtsCI GGATG 6 cut(s) 24, 97, 160, 311, 400, 965
BveI ACCTGC 1 cut(s) 860
Cac8I GCNNGC 4 cut(s) 241, 433, 754, 951
CciI TCATGA 1 cut(s) 181
CfoI GCGC 3 cut(s) 622, 891, 949
Cfr13I GGNCC 2 cut(s) 702, 720
CseI GACGC 2 cut(s) 508, 608
Csp6I GTAC 4 cut(s) 58, 141, 293, 427
CviQI GTAC 4 cut(s) 58, 141, 293, 427
DpnI GATC 4 cut(s) 87, 147, 186, 762
DpnII GATC 4 cut(s) 85, 145, 184, 760
DrdI GACNNNNNNGTC 1 cut(s) 28
DseDI GACNNNNNNGTC 1 cut(s) 28
EaeI YGGCCR 2 cut(s) 208, 643
Eam1104I CTCTTC 1 cut(s) 470
EarI CTCTTC 1 cut(s) 470
Eco130I CCWWGG 3 cut(s) 205, 270, 705
Eco24I GRGCYC 1 cut(s) 376
Eco47I GGWCC 1 cut(s) 720
EcoO109I RGGNCCY 1 cut(s) 720
EcoRII CCWGG 2 cut(s) 376, 470
EcoT14I CCWWGG 3 cut(s) 205, 270, 705
EcoT38I GRGCYC 1 cut(s) 376
ErhI CCWWGG 3 cut(s) 205, 270, 705
FaqI GGGAC 2 cut(s) 302, 373
FauI CCCGC 1 cut(s) 656
FauNDI CATATG 1 cut(s) 789
FbaI TGATCA 2 cut(s) 85, 184
Fnu4HI GCNGC 4 cut(s) 416, 794, 862, 865
FokI GGATG 6 cut(s) 11, 84, 167, 298, 387, 952
FriOI GRGCYC 1 cut(s) 376
Fsp4HI GCNGC 4 cut(s) 416, 794, 862, 865
FspBI CTAG 1 cut(s) 114
GlaI GCGC 3 cut(s) 621, 890, 948
GluI GCNGC 4 cut(s) 416, 794, 862, 865
GsaI CCCAGC 1 cut(s) 336
GsuI CTGGAG 2 cut(s) 360, 880
HaeIII GGCC 3 cut(s) 210, 645, 703
HapII CCGG 4 cut(s) 28, 286, 350, 903
HgaI GACGC 2 cut(s) 508, 608
HhaI GCGC 3 cut(s) 622, 891, 949
Hin1I GRCGYC 2 cut(s) 5, 600
Hin6I GCGC 3 cut(s) 620, 889, 947
HinP1I GCGC 3 cut(s) 620, 889, 947
HindIII AAGCTT 1 cut(s) 277
HinfI GANTC 3 cut(s) 317, 504, 933
HpaII CCGG 4 cut(s) 28, 286, 350, 903
HphI GGTGA 2 cut(s) 531, 917
Hpy188I TCNGA 4 cut(s) 10, 316, 322, 989
Hpy188III TCNNGA 3 cut(s) 149, 182, 975
HpyAV CCTTC 4 cut(s) 363, 489, 589, 919
HpyCH4III ACNGT 1 cut(s) 454
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 5 cut(s) 46, 729, 756, 796, 855
HpyF10VI GCNNNNNNNGC 4 cut(s) 793, 802, 861, 897
HpySE526I ACGT 1 cut(s) 291
Hsp92I GRCGYC 2 cut(s) 5, 600
HspAI GCGC 3 cut(s) 620, 889, 947
KpnI GGTACC 1 cut(s) 144
Ksp22I TGATCA 2 cut(s) 85, 184
Kzo9I GATC 4 cut(s) 85, 145, 184, 760
LguI GCTCTTC 1 cut(s) 470
LmnI GCTCC 2 cut(s) 379, 778
Lsp1109I GCAGC 2 cut(s) 402, 780
LweI GCATC 5 cut(s) 409, 545, 792, 900, 974
MaeI CTAG 1 cut(s) 114
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 3 cut(s) 191, 258, 905
MalI GATC 4 cut(s) 87, 147, 186, 762
MboI GATC 4 cut(s) 85, 145, 184, 760
MboII GAAGA 4 cut(s) 62, 239, 487, 561
MflI RGATCY 1 cut(s) 760
MhlI GDGCHC 2 cut(s) 376, 783
MlsI TGGCCA 2 cut(s) 210, 645
MluCI AATT 2 cut(s) 406, 868
MluNI TGGCCA 2 cut(s) 210, 645
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 3 cut(s) 339, 345, 756
Mox20I TGGCCA 2 cut(s) 210, 645
MroXI GAANNNNTTC 1 cut(s) 251
MscI TGGCCA 2 cut(s) 210, 645
MseI TTAA 1 cut(s) 420
MslI CAYNNNNRTG 3 cut(s) 186, 248, 734
Msp20I TGGCCA 2 cut(s) 210, 645
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 4 cut(s) 28, 286, 350, 903
MspR9I CCNGG 4 cut(s) 287, 378, 472, 903
MvaI CCWGG 2 cut(s) 378, 472
MvnI CGCG 2 cut(s) 502, 622
MwoI GCNNNNNNNGC 4 cut(s) 793, 802, 861, 897
NciI CCSGG 2 cut(s) 287, 903
NcoI CCATGG 2 cut(s) 205, 270
NdeI CATATG 1 cut(s) 789
NdeII GATC 4 cut(s) 85, 145, 184, 760
NlaIV GGNNCC 3 cut(s) 142, 330, 375
NmuCI GTSAC 2 cut(s) 258, 905
PagI TCATGA 1 cut(s) 181
PciSI GCTCTTC 1 cut(s) 470
PdmI GAANNNNTTC 1 cut(s) 251
PfeI GAWTC 2 cut(s) 504, 933
PfoI TCCNGGA 1 cut(s) 470
PkrI GCNGC 4 cut(s) 417, 795, 863, 866
Ple19I CGATCG 1 cut(s) 148
PleI GAGTC 1 cut(s) 311
PpsI GAGTC 1 cut(s) 311
PpuMI RGGWCCY 1 cut(s) 720
Psp5II RGGWCCY 1 cut(s) 720
Psp6I CCWGG 2 cut(s) 376, 470
PspFI CCCAGC 1 cut(s) 332
PspGI CCWGG 2 cut(s) 376, 470
PspN4I GGNNCC 3 cut(s) 142, 330, 375
PspPI GGNCC 2 cut(s) 702, 720
PspPPI RGGWCCY 1 cut(s) 720
PstI CTGCAG 1 cut(s) 857
PsuI RGATCY 1 cut(s) 760
PvuI CGATCG 1 cut(s) 148
RsaI GTAC 4 cut(s) 59, 142, 294, 428
RsaNI GTAC 4 cut(s) 58, 141, 293, 427
RseI CAYNNNNRTG 3 cut(s) 186, 248, 734
SapI GCTCTTC 1 cut(s) 470
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 4 cut(s) 416, 794, 862, 865
Sau3AI GATC 4 cut(s) 85, 145, 184, 760
Sau96I GGNCC 2 cut(s) 702, 720
ScaI AGTACT 1 cut(s) 59
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 4 cut(s) 287, 378, 472, 903
SduI GDGCHC 2 cut(s) 376, 783
SfaNI GCATC 5 cut(s) 409, 545, 792, 900, 974
SfcI CTRYAG 1 cut(s) 853
SinI GGWCC 1 cut(s) 720
SmiMI CAYNNNNRTG 3 cut(s) 186, 248, 734
Sse9I AATT 2 cut(s) 406, 868
SsiI CCGC 5 cut(s) 237, 622, 663, 861, 864
SspMI CTAG 1 cut(s) 114
StyD4I CCNGG 4 cut(s) 285, 376, 470, 901
StyI CCWWGG 3 cut(s) 205, 270, 705
TaaI ACNGT 1 cut(s) 454
TaiI ACGT 1 cut(s) 294
TaqI TCGA 2 cut(s) 517, 931
TasI AATT 2 cut(s) 406, 868
TatI WGTACW 1 cut(s) 57
TauI GCSGC 2 cut(s) 864, 867
TfiI GAWTC 2 cut(s) 504, 933
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TseFI GTSAC 2 cut(s) 258, 905
TseI GCWGC 2 cut(s) 415, 793
Tsp45I GTSAC 2 cut(s) 258, 905
TspDTI ATGAA 3 cut(s) 244, 260, 456
TspGWI ACGGA 2 cut(s) 121, 641
VpaK11BI GGWCC 1 cut(s) 720
XmnI GAANNNNTTC 1 cut(s) 251
XspI CTAG 1 cut(s) 114
ZrmI AGTACT 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.