pycom03g07920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0010914
Physical Location & Seq
Forward (+)
6332097 .. 6333242
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g07920.1

Sequence Viewer

Length: 987 bp
ATGGCGTCAGATGATAGTATGACCATCCGGTCTTGTATCTCCATGCAGGAAGACGAGTACGATGAGGATACCGATGATGGGTTTGATCAGCTGCCCCATCCCCATAACTTGTCTAGGCTATTCATGTGTTCCGTATCTGGTACCGATCGTGAGGATGATATGGATTATGATATTAATCATGATGATCATGGTAACTATTACTACCATGGCCAAGATAAATCCCAAGCAGACACTACCGCTGGCATGAATATGTTCATGTCACTCTTGTCCATGGAAAGCTTTGACCGGGACGTACTGGAATTTGGGCTGTCATCCGACTCCGACAAGGAACCCAGCTCTTACTCGCTTCCGGCAACACCCCCAAGACGAAGGGCTCCAGGTGGAATGCCCCATTACAAGCATCGCAATCCCATGCTGCATAAAGAGTACGCCAGCGAGAATGAAGCTCAAACAGTCATGAGCAACATTTCCAGGAGGAGCAGAAGGAGAAGAAGAAGGACGCGAATCATAAACGATCGACACTCATGGCTATCGGCATCACCAGACAGAGGATACATAGCTGAGAAGAAAGTTGATGATGATGATGACACGAAGGCCACCAAGAATAGGATGATGGCGCGGACGGATAGTAGTCACCTTGGCCATTGCCATAGCTTTAGCGGGGAGACTGAGGGTGGGAGTGTGGTAGTGATAACGAGGCCCAAGGGAGGGAGGAGGTCCCTGTGCATGGACATGGAGGAAGTCAAGGCTTGCAGAGATCTTGGGTTTGAGTTGGAGCACCAGCATATGCTGCACGAGATGCCCCTTAATCTTTCTCGCGCTGCCTCCACCCTTGACACCAACACTTCCTGCAGTAGCGGCGGCAATTCCCCCATCGCCAACTGGCGCATCTCCAGCCCCGGTGATGACCCACGGGAAGTGAAGGCTCGAATCAAGGTCTGGGCGCAGGCTGTGGCATTGGCATCCACATCACGACAAGGCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

329

Amino Acids

37.03

Weight (kDa)

5.75

Isoelectric Point (pI)

64.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010914)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46940 AT3G62070 AT4G01670
fragaria_vesca FvH4_1g26130
malus_domestica MD00G1137300.v1.1
prunus_persica Prupe.3G001400_v2.0.a1
pyrus_communis pycom03g07920
rosa_chinensis RchiOBHm_Chr3g0485631
rosa_laevigata RLG00000023140
rosa_multiflora Rmu_sc0001272.1_g000004 Rmu_sc0004711.1_g000006 Rmu_sc0036906.1_g000001
rosa_roxburghii Rroxscaffold_6G00396570 Rroxscaffold_6G00396880
rosa_rugosa Rorug03G0220300
rosa_samantha Rh3AG269000 Rh3BG304600 Rh3CG303200 Rh3DG299500
rosa_wichuraiana Rw3G023990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 28
Acc65I GGTACC 1 cut(s) 140
AccB1I GGYRCC 1 cut(s) 140
AccII CGCG 3 cut(s) 502, 619, 819
AciI CCGC 5 cut(s) 237, 619, 660, 858, 861
AcoI YGGCCR 2 cut(s) 208, 640
AcsI RAATTY 1 cut(s) 299
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 4 cut(s) 59, 142, 294, 428
AfiI CCNNNNNNNGG 6 cut(s) 78, 548, 606, 707, 708, 727
AjnI CCWGG 2 cut(s) 376, 470
AluBI AGCT 6 cut(s) 91, 279, 336, 446, 560, 654
AluI AGCT 6 cut(s) 91, 279, 336, 446, 560, 654
Alw21I GWGCWC 1 cut(s) 780
Alw26I GTCTC 1 cut(s) 659
AoxI GGCC 4 cut(s) 208, 594, 640, 698
ApeKI GCWGC 4 cut(s) 91, 415, 790, 821
ApoI RAATTY 1 cut(s) 299
AseI ATTAAT 1 cut(s) 174
Asp700I GAANNNNTTC 1 cut(s) 251
Asp718I GGTACC 1 cut(s) 140
AspLEI GCGC 4 cut(s) 619, 821, 888, 946
AspS9I GGNCC 2 cut(s) 699, 717
AsuC2I CCSGG 2 cut(s) 287, 900
AsuHPI GGTGA 3 cut(s) 531, 626, 914
AvaII GGWCC 1 cut(s) 717
BalI TGGCCA 2 cut(s) 210, 642
BanI GGYRCC 1 cut(s) 140
BanII GRGCYC 1 cut(s) 376
BauI CACGAG 1 cut(s) 794
BbsI GAAGAC 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 780
BbvI GCAGC 4 cut(s) 78, 402, 777, 808
BccI CCATC 5 cut(s) 32, 71, 105, 607, 881
BciT130I CCWGG 2 cut(s) 378, 472
BciVI GTATCC 2 cut(s) 61, 545
BclI TGATCA 2 cut(s) 85, 184
BcnI CCSGG 2 cut(s) 287, 900
BcoDI GTCTC 1 cut(s) 659
BfaI CTAG 1 cut(s) 114
BfmI CTRYAG 1 cut(s) 850
BfuI GTATCC 2 cut(s) 61, 545
BglII AGATCT 1 cut(s) 757
BisI GCNGC 6 cut(s) 92, 416, 791, 822, 859, 862
BlsI GCNGC 6 cut(s) 93, 417, 792, 823, 860, 863
Bme1390I CCNGG 4 cut(s) 287, 378, 472, 900
Bme18I GGWCC 1 cut(s) 717
BmgT120I GGNCC 2 cut(s) 699, 717
BmiI GGNNCC 4 cut(s) 142, 330, 375, 719
BmrFI CCNGG 4 cut(s) 287, 378, 472, 900
BmsI GCATC 5 cut(s) 409, 545, 789, 897, 971
BpiI GAAGAC 1 cut(s) 57
BpmI CTGGAG 2 cut(s) 360, 877
BpuMI CCSGG 2 cut(s) 287, 900
BsaBI GATNNNNATC 1 cut(s) 174
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 6 cut(s) 205, 270, 637, 702, 898, 911
BsaWI WCCGGW 1 cut(s) 27
Bsc4I CCNNNNNNNGG 6 cut(s) 78, 548, 606, 707, 708, 727
Bse1I ACTGG 2 cut(s) 300, 887
Bse3DI GCAATG 1 cut(s) 643
Bse8I GATNNNNATC 1 cut(s) 174
BseBI CCWGG 2 cut(s) 378, 472
BseDI CCNNGG 6 cut(s) 205, 270, 637, 702, 898, 911
BseGI GGATG 6 cut(s) 24, 97, 160, 311, 615, 962
BseJI GATNNNNATC 1 cut(s) 174
BseLI CCNNNNNNNGG 6 cut(s) 78, 548, 606, 707, 708, 727
BseMI GCAATG 1 cut(s) 643
BseMII CTCAG 2 cut(s) 552, 660
BseNI ACTGG 2 cut(s) 300, 887
BseRI GAGGAG 2 cut(s) 490, 727
BseXI GCAGC 4 cut(s) 78, 402, 777, 808
BseYI CCCAGC 1 cut(s) 332
BsgI GTGCAG 1 cut(s) 776
Bsh1236I CGCG 3 cut(s) 502, 619, 819
Bsh1285I CGRYCG 2 cut(s) 148, 517
BshFI GGCC 4 cut(s) 210, 596, 642, 700
BshNI GGYRCC 1 cut(s) 140
BsiEI CGRYCG 2 cut(s) 148, 517
BsiHKAI GWGCWC 1 cut(s) 780
BsiSI CCGG 4 cut(s) 28, 286, 350, 900
BslFI GGGAC 2 cut(s) 302, 703
BslI CCNNNNNNNGG 6 cut(s) 78, 548, 606, 707, 708, 727
BsmAI GTCTC 1 cut(s) 659
BsmFI GGGAC 2 cut(s) 302, 703
BsmI GAATGC 1 cut(s) 390
BsnI GGCC 4 cut(s) 210, 596, 642, 700
Bsp1286I GDGCHC 2 cut(s) 376, 780
Bsp143I GATC 5 cut(s) 85, 145, 184, 514, 757
Bsp19I CCATGG 2 cut(s) 205, 270
BspACI CCGC 5 cut(s) 237, 619, 660, 858, 861
BspANI GGCC 4 cut(s) 210, 596, 642, 700
BspCNI CTCAG 2 cut(s) 553, 661
BspFNI CGCG 3 cut(s) 502, 619, 819
BspHI TCATGA 2 cut(s) 178, 456
BspLI GGNNCC 4 cut(s) 142, 330, 375, 719
BspMAI CTGCAG 1 cut(s) 854
BspT107I GGYRCC 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 643
BsrI ACTGG 2 cut(s) 300, 887
BssECI CCNNGG 6 cut(s) 205, 270, 637, 702, 898, 911
BssMI GATC 5 cut(s) 85, 145, 184, 514, 757
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 794
BssT1I CCWWGG 4 cut(s) 205, 270, 637, 702
Bst2BI CACGAG 1 cut(s) 794
Bst2UI CCWGG 2 cut(s) 378, 472
Bst4CI ACNGT 1 cut(s) 454
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 2 cut(s) 790, 799
BstC8I GCNNGC 4 cut(s) 241, 433, 751, 948
BstDEI CTNAG 2 cut(s) 561, 669
BstDSI CCRYGG 3 cut(s) 205, 270, 911
BstF5I GGATG 6 cut(s) 24, 97, 160, 311, 615, 962
BstFNI CGCG 3 cut(s) 502, 619, 819
BstHHI GCGC 4 cut(s) 619, 821, 888, 946
BstKTI GATC 5 cut(s) 88, 148, 187, 517, 760
BstMAI GTCTC 1 cut(s) 659
BstMBI GATC 5 cut(s) 85, 145, 184, 514, 757
BstMCI CGRYCG 2 cut(s) 148, 517
BstMWI GCNNNNNNNGC 4 cut(s) 790, 799, 858, 894
BstNI CCWGG 2 cut(s) 378, 472
BstSCI CCNGG 4 cut(s) 285, 376, 470, 898
BstSFI CTRYAG 1 cut(s) 850
BstUI CGCG 3 cut(s) 502, 619, 819
BstV1I GCAGC 4 cut(s) 78, 402, 777, 808
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 757
BstYI RGATCY 1 cut(s) 757
BsuI GTATCC 2 cut(s) 61, 545
BsuRI GGCC 4 cut(s) 210, 596, 642, 700
BtgI CCRYGG 3 cut(s) 205, 270, 911
BtgZI GCGATG 2 cut(s) 386, 859
BtsCI GGATG 6 cut(s) 24, 97, 160, 311, 615, 962
Cac8I GCNNGC 4 cut(s) 241, 433, 751, 948
CciI TCATGA 2 cut(s) 178, 456
CfoI GCGC 4 cut(s) 619, 821, 888, 946
Cfr13I GGNCC 2 cut(s) 699, 717
CseI GACGC 1 cut(s) 508
Csp6I GTAC 4 cut(s) 58, 141, 293, 427
CviQI GTAC 4 cut(s) 58, 141, 293, 427
DdeI CTNAG 2 cut(s) 561, 669
DpnI GATC 5 cut(s) 87, 147, 186, 516, 759
DpnII GATC 5 cut(s) 85, 145, 184, 514, 757
DrdI GACNNNNNNGTC 1 cut(s) 28
DseDI GACNNNNNNGTC 1 cut(s) 28
EaeI YGGCCR 2 cut(s) 208, 640
Eco130I CCWWGG 4 cut(s) 205, 270, 637, 702
Eco24I GRGCYC 1 cut(s) 376
Eco47I GGWCC 1 cut(s) 717
EcoO109I RGGNCCY 1 cut(s) 717
EcoRII CCWGG 2 cut(s) 376, 470
EcoT14I CCWWGG 4 cut(s) 205, 270, 637, 702
EcoT38I GRGCYC 1 cut(s) 376
ErhI CCWWGG 4 cut(s) 205, 270, 637, 702
FaqI GGGAC 2 cut(s) 302, 703
FauI CCCGC 1 cut(s) 653
FauNDI CATATG 1 cut(s) 786
FbaI TGATCA 2 cut(s) 85, 184
Fnu4HI GCNGC 6 cut(s) 92, 416, 791, 822, 859, 862
FokI GGATG 6 cut(s) 11, 84, 167, 298, 622, 949
FriOI GRGCYC 1 cut(s) 376
Fsp4HI GCNGC 6 cut(s) 92, 416, 791, 822, 859, 862
FspBI CTAG 1 cut(s) 114
GlaI GCGC 4 cut(s) 618, 820, 887, 945
GluI GCNGC 6 cut(s) 92, 416, 791, 822, 859, 862
GsaI CCCAGC 1 cut(s) 336
GsuI CTGGAG 2 cut(s) 360, 877
HaeIII GGCC 4 cut(s) 210, 596, 642, 700
HapII CCGG 4 cut(s) 28, 286, 350, 900
HgaI GACGC 1 cut(s) 508
HhaI GCGC 4 cut(s) 619, 821, 888, 946
Hin1I GRCGYC 1 cut(s) 5
Hin6I GCGC 4 cut(s) 617, 819, 886, 944
HinP1I GCGC 4 cut(s) 617, 819, 886, 944
HindIII AAGCTT 1 cut(s) 277
HinfI GANTC 3 cut(s) 317, 504, 930
HpaII CCGG 4 cut(s) 28, 286, 350, 900
HphI GGTGA 3 cut(s) 531, 626, 914
Hpy188I TCNGA 4 cut(s) 10, 316, 322, 986
Hpy188III TCNNGA 4 cut(s) 149, 179, 457, 972
HpyAV CCTTC 5 cut(s) 363, 477, 489, 586, 916
HpyCH4III ACNGT 1 cut(s) 454
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 6 cut(s) 46, 418, 726, 753, 793, 852
HpyF10VI GCNNNNNNNGC 4 cut(s) 790, 799, 858, 894
HpyF3I CTNAG 2 cut(s) 561, 669
HpySE526I ACGT 1 cut(s) 291
Hsp92I GRCGYC 1 cut(s) 5
HspAI GCGC 4 cut(s) 617, 819, 886, 944
KpnI GGTACC 1 cut(s) 144
Ksp22I TGATCA 2 cut(s) 85, 184
Kzo9I GATC 5 cut(s) 85, 145, 184, 514, 757
LmnI GCTCC 3 cut(s) 379, 477, 775
Lsp1109I GCAGC 4 cut(s) 78, 402, 777, 808
LweI GCATC 5 cut(s) 409, 545, 789, 897, 971
MaeI CTAG 1 cut(s) 114
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 3 cut(s) 191, 258, 632
MalI GATC 5 cut(s) 87, 147, 186, 516, 759
MboI GATC 5 cut(s) 85, 145, 184, 514, 757
MboII GAAGA 4 cut(s) 62, 501, 504, 577
MflI RGATCY 1 cut(s) 757
MhlI GDGCHC 2 cut(s) 376, 780
MlsI TGGCCA 2 cut(s) 210, 642
MluCI AATT 2 cut(s) 299, 865
MluNI TGGCCA 2 cut(s) 210, 642
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 3 cut(s) 339, 345, 753
Mox20I TGGCCA 2 cut(s) 210, 642
MroXI GAANNNNTTC 1 cut(s) 251
MscI TGGCCA 2 cut(s) 210, 642
MseI TTAA 2 cut(s) 174, 807
MslI CAYNNNNRTG 2 cut(s) 248, 731
Msp20I TGGCCA 2 cut(s) 210, 642
MspA1I CMGCKG 2 cut(s) 91, 239
MspI CCGG 4 cut(s) 28, 286, 350, 900
MspR9I CCNGG 4 cut(s) 287, 378, 472, 900
Mva1269I GAATGC 1 cut(s) 390
MvaI CCWGG 2 cut(s) 378, 472
MvnI CGCG 3 cut(s) 502, 619, 819
MwoI GCNNNNNNNGC 4 cut(s) 790, 799, 858, 894
NciI CCSGG 2 cut(s) 287, 900
NcoI CCATGG 2 cut(s) 205, 270
NdeI CATATG 1 cut(s) 786
NdeII GATC 5 cut(s) 85, 145, 184, 514, 757
NlaIV GGNNCC 4 cut(s) 142, 330, 375, 719
NmuCI GTSAC 2 cut(s) 258, 632
PagI TCATGA 2 cut(s) 178, 456
PctI GAATGC 1 cut(s) 390
PdmI GAANNNNTTC 1 cut(s) 251
PfeI GAWTC 2 cut(s) 504, 930
PfoI TCCNGGA 1 cut(s) 470
PkrI GCNGC 6 cut(s) 93, 417, 792, 823, 860, 863
Ple19I CGATCG 2 cut(s) 148, 517
PleI GAGTC 1 cut(s) 311
PpsI GAGTC 1 cut(s) 311
PpuMI RGGWCCY 1 cut(s) 717
PshBI ATTAAT 1 cut(s) 174
Psp5II RGGWCCY 1 cut(s) 717
Psp6I CCWGG 2 cut(s) 376, 470
PspFI CCCAGC 1 cut(s) 332
PspGI CCWGG 2 cut(s) 376, 470
PspN4I GGNNCC 4 cut(s) 142, 330, 375, 719
PspPI GGNCC 2 cut(s) 699, 717
PspPPI RGGWCCY 1 cut(s) 717
PstI CTGCAG 1 cut(s) 854
PsuI RGATCY 1 cut(s) 757
PvuI CGATCG 2 cut(s) 148, 517
PvuII CAGCTG 1 cut(s) 91
RsaI GTAC 4 cut(s) 59, 142, 294, 428
RsaNI GTAC 4 cut(s) 58, 141, 293, 427
RseI CAYNNNNRTG 2 cut(s) 248, 731
SaqAI TTAA 2 cut(s) 174, 807
SatI GCNGC 6 cut(s) 92, 416, 791, 822, 859, 862
Sau3AI GATC 5 cut(s) 85, 145, 184, 514, 757
Sau96I GGNCC 2 cut(s) 699, 717
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 4 cut(s) 287, 378, 472, 900
SduI GDGCHC 2 cut(s) 376, 780
SfaNI GCATC 5 cut(s) 409, 545, 789, 897, 971
SfcI CTRYAG 1 cut(s) 850
SinI GGWCC 1 cut(s) 717
SmiMI CAYNNNNRTG 2 cut(s) 248, 731
Sse9I AATT 2 cut(s) 299, 865
SsiI CCGC 5 cut(s) 237, 619, 660, 858, 861
SspMI CTAG 1 cut(s) 114
StyD4I CCNGG 4 cut(s) 285, 376, 470, 898
StyI CCWWGG 4 cut(s) 205, 270, 637, 702
TaaI ACNGT 1 cut(s) 454
TaiI ACGT 1 cut(s) 294
TaqI TCGA 2 cut(s) 517, 928
TasI AATT 2 cut(s) 299, 865
TauI GCSGC 2 cut(s) 861, 864
TfiI GAWTC 2 cut(s) 504, 930
Tru1I TTAA 2 cut(s) 174, 807
Tru9I TTAA 2 cut(s) 174, 807
TseFI GTSAC 2 cut(s) 258, 632
TseI GCWGC 4 cut(s) 91, 415, 790, 821
Tsp45I GTSAC 2 cut(s) 258, 632
TspDTI ATGAA 4 cut(s) 112, 244, 260, 456
TspGWI ACGGA 2 cut(s) 121, 638
VpaK11BI GGWCC 1 cut(s) 717
VspI ATTAAT 1 cut(s) 174
XapI RAATTY 1 cut(s) 299
XmnI GAANNNNTTC 1 cut(s) 251
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.