Rh3AG269000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0010914
Physical Location & Seq
Reverse (-)
30628567 .. 30630875
2309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG269000.1

Sequence Viewer

Length: 1068 bp
ATGGCGTCAGATGAGAGTATGACCCTCAGGTCTTGTATCTCTATGCAGGAAGGTGAGTACGACGATTATACCGACGAAGGGTATGATCAGGATCAGCCTCATCAGCACTTGTCTAGGTTGTCCATGTGTACCAGCAATTCCATCTATGGTGATGACCAGATGAATGATGATGGCAATTCCATCTACTTCCAAGGCCAGCAAGAGAATGGTATGAGCTTGTACATGTCACTCTTGTCAATAGACAGCTTTGATGGGGATGGAGATGTTGATGAAGAAGAGGAATCGTCCAACAAGAAGCGGCTCAGTTCTCAGCTGGTACTCGCAGCTGGGATGTCAACGGATGACGATTCCGACACGGAACCGGCCTGTTACTCCCTTCCGGCGACACCCCCTAGGCTGAGGAGGGATCTGCCTGGTGCTCGTGGTGCAGGGAGCATTCTTATTAACAAGGTGCATCCCTATTCTAAGGTGGACAAAGAGTATGCGAGCGAAAATGAAGCTCAGAAGGCCTTGAGTGATGACGGCAGGAGGAGCAGGAGGAGGAGTAGGAGGAGAATGATGAAGAACAGATCATCTTGGCTATCACCATCACCATTCCACCACGGAGCTAAGACGACACCGGACAGTGATGATGGAGAAGATGAGGACAAGGAGGAGGATGAGGAGGAGGAGGAAGAGAGCATGTACATGAATGTGTGTGGTGATCATTGTCACAGCTTCAGCGGAGAGAGCGAGGGTACGGGGATGGTGGTGATAGCAAGGCCCAAAGGCGGGAACAGGTCCCTCTGCATGGACATGGAGGAAGTCAAGGCTTGCAAAGACCTCGGCTTCGAGTTGGAGCACGACCGCACGCTGCAGCAGCAGCAGGAGATGATCCCTTCTCGGCTTTCTCTATACGCCACCACCGTCGACACTAACTACACCACCAGCAGCGGTGGCAATTCCCCTATTGCCAACTGGCCCATTTCCAGTCCCGGGGACCATCCGCAGGAGGTCAAGGCTCGCCTCAAGGCCTGGGCGCAGGCAGTGGCTCTGGCATCTGCATCACCCACAAGGCACTCGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

355

Amino Acids

39.43

Weight (kDa)

4.61

Isoelectric Point (pI)

77.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010914)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46940 AT3G62070 AT4G01670
fragaria_vesca FvH4_1g26130
malus_domestica MD00G1137300.v1.1
prunus_persica Prupe.3G001400_v2.0.a1
pyrus_communis pycom03g07920
rosa_chinensis RchiOBHm_Chr3g0485631
rosa_laevigata RLG00000023140
rosa_multiflora Rmu_sc0001272.1_g000004 Rmu_sc0004711.1_g000006 Rmu_sc0036906.1_g000001
rosa_roxburghii Rroxscaffold_6G00396570 Rroxscaffold_6G00396880
rosa_rugosa Rorug03G0220300
rosa_samantha Rh3AG269000 Rh3BG304600 Rh3CG303200 Rh3DG299500
rosa_wichuraiana Rw3G023990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 28
AccI GTMKAC 1 cut(s) 909
AciI CCGC 6 cut(s) 298, 723, 771, 847, 933, 986
AclWI GGATC 3 cut(s) 99, 414, 868
AcuI CTGAAG 1 cut(s) 703
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 6 cut(s) 59, 130, 221, 318, 686, 739
AfiI CCNNNNNNNGG 6 cut(s) 78, 770, 771, 790, 975, 988
AflIII ACRYGT 1 cut(s) 222
AjnI CCWGG 2 cut(s) 412, 1013
AluBI AGCT 8 cut(s) 216, 246, 313, 326, 500, 608, 717, 1065
AluI AGCT 8 cut(s) 216, 246, 313, 326, 500, 608, 717, 1065
Alw21I GWGCWC 2 cut(s) 421, 843
AlwI GGATC 3 cut(s) 99, 414, 868
Ama87I CYCGRG 2 cut(s) 974, 1060
AoxI GGCC 6 cut(s) 193, 363, 507, 761, 959, 1011
ApeKI GCWGC 6 cut(s) 323, 853, 856, 859, 862, 930
ArsI GACNNNNNNTTYG 2 cut(s) 812, 844
AspA2I CCTAGG 1 cut(s) 392
AspLEI GCGC 1 cut(s) 1021
AspS9I GGNCC 4 cut(s) 762, 780, 960, 979
AsuC2I CCSGG 2 cut(s) 975, 976
AsuHPI GGTGA 7 cut(s) 65, 161, 576, 582, 713, 763, 1038
AvaI CYCGRG 2 cut(s) 974, 1060
AvaII GGWCC 2 cut(s) 780, 979
AvrII CCTAGG 1 cut(s) 392
AxyI CCTNAGG 1 cut(s) 26
BauI CACGAG 1 cut(s) 420
Bbv12I GWGCWC 2 cut(s) 421, 843
BbvCI CCTCAGC 1 cut(s) 398
BbvI GCAGC 6 cut(s) 335, 840, 868, 871, 874, 942
BccI CCATC 9 cut(s) 149, 164, 188, 245, 251, 595, 626, 739, 990
BceAI ACGGC 1 cut(s) 538
BcgI CGANNNNNNTGC 2 cut(s) 805, 839
BciT130I CCWGG 2 cut(s) 414, 1015
BclI TGATCA 2 cut(s) 85, 703
BcnI CCSGG 2 cut(s) 975, 976
BfaI CTAG 2 cut(s) 114, 393
BfmI CTRYAG 1 cut(s) 854
BisI GCNGC 7 cut(s) 299, 324, 854, 857, 860, 863, 931
BlnI CCTAGG 1 cut(s) 392
BlsI GCNGC 7 cut(s) 300, 325, 855, 858, 861, 864, 932
Bme1390I CCNGG 4 cut(s) 414, 975, 976, 1015
Bme18I GGWCC 2 cut(s) 780, 979
BmeT110I CYCGRG 2 cut(s) 974, 1060
BmgT120I GGNCC 4 cut(s) 762, 780, 960, 979
BmiI GGNNCC 3 cut(s) 360, 782, 980
BmrFI CCNGG 4 cut(s) 414, 975, 976, 1015
BmsI GCATC 3 cut(s) 463, 1046, 1052
Bpu10I CCTNAGC 1 cut(s) 398
BpuEI CTTGAG 2 cut(s) 532, 992
BpuMI CCSGG 2 cut(s) 975, 976
BsaBI GATNNNNATC 1 cut(s) 90
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 7 cut(s) 190, 392, 601, 823, 974, 975, 1014
BsaWI WCCGGW 1 cut(s) 619
BsaXI ACNNNNNCTCC 2 cut(s) 529, 559
Bsc4I CCNNNNNNNGG 6 cut(s) 78, 770, 771, 790, 975, 988
Bse118I RCCGGY 1 cut(s) 361
Bse1I ACTGG 2 cut(s) 962, 969
Bse21I CCTNAGG 1 cut(s) 26
Bse8I GATNNNNATC 1 cut(s) 90
BseBI CCWGG 2 cut(s) 414, 1015
BseDI CCNNGG 7 cut(s) 190, 392, 601, 823, 974, 975, 1014
BseGI GGATG 7 cut(s) 262, 336, 346, 454, 664, 750, 982
BseJI GATNNNNATC 1 cut(s) 90
BseLI CCNNNNNNNGG 6 cut(s) 78, 770, 771, 790, 975, 988
BseMII CTCAG 5 cut(s) 40, 316, 323, 389, 515
BseNI ACTGG 2 cut(s) 962, 969
BseRI GAGGAG 9 cut(s) 415, 544, 553, 556, 565, 668, 677, 680, 683
BseXI GCAGC 6 cut(s) 335, 840, 868, 871, 874, 942
BseYI CCCAGC 1 cut(s) 326
BsgI GTGCAG 1 cut(s) 447
Bsh1285I CGRYCG 1 cut(s) 847
BshFI GGCC 6 cut(s) 195, 365, 509, 763, 961, 1013
BsiEI CGRYCG 1 cut(s) 847
BsiHKAI GWGCWC 2 cut(s) 421, 843
BsiHKCI CYCGRG 2 cut(s) 974, 1060
BsiSI CCGG 4 cut(s) 362, 380, 620, 975
BslFI GGGAC 3 cut(s) 766, 957, 992
BslI CCNNNNNNNGG 6 cut(s) 78, 770, 771, 790, 975, 988
BsmFI GGGAC 3 cut(s) 766, 957, 992
BsmI GAATGC 1 cut(s) 435
BsnI GGCC 6 cut(s) 195, 365, 509, 763, 961, 1013
BsoBI CYCGRG 2 cut(s) 974, 1060
Bsp1286I GDGCHC 2 cut(s) 421, 843
Bsp1407I TGTACA 2 cut(s) 219, 684
Bsp143I GATC 6 cut(s) 85, 91, 406, 569, 703, 873
BspACI CCGC 6 cut(s) 298, 723, 771, 847, 933, 986
BspANI GGCC 6 cut(s) 195, 365, 509, 763, 961, 1013
BspCNI CTCAG 5 cut(s) 39, 315, 322, 390, 514
BspLI GGNNCC 3 cut(s) 360, 782, 980
BspMAI CTGCAG 1 cut(s) 858
BspPI GGATC 3 cut(s) 99, 414, 868
BsrFI RCCGGY 1 cut(s) 361
BsrGI TGTACA 2 cut(s) 219, 684
BsrI ACTGG 2 cut(s) 962, 969
BssAI RCCGGY 1 cut(s) 361
BssECI CCNNGG 7 cut(s) 190, 392, 601, 823, 974, 975, 1014
BssMI GATC 6 cut(s) 85, 91, 406, 569, 703, 873
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 420
BssT1I CCWWGG 2 cut(s) 190, 392
Bst2BI CACGAG 1 cut(s) 420
Bst2UI CCWGG 2 cut(s) 414, 1015
Bst4CI ACNGT 2 cut(s) 626, 907
Bst6I CTCTTC 2 cut(s) 270, 669
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 2 cut(s) 219, 684
BstC8I GCNNGC 6 cut(s) 197, 487, 814, 851, 1003, 1023
BstDEI CTNAG 7 cut(s) 26, 302, 309, 398, 465, 501, 609
BstDSI CCRYGG 1 cut(s) 601
BstF5I GGATG 7 cut(s) 262, 336, 346, 454, 664, 750, 982
BstHHI GCGC 1 cut(s) 1021
BstKTI GATC 6 cut(s) 88, 94, 409, 572, 706, 876
BstMBI GATC 6 cut(s) 85, 91, 406, 569, 703, 873
BstMCI CGRYCG 1 cut(s) 847
BstMWI GCNNNNNNNGC 8 cut(s) 103, 425, 506, 531, 729, 859, 862, 936
BstNI CCWGG 2 cut(s) 414, 1015
BstNSI RCATGY 2 cut(s) 226, 685
BstSCI CCNGG 4 cut(s) 412, 973, 974, 1013
BstSFI CTRYAG 1 cut(s) 854
BstV1I GCAGC 6 cut(s) 335, 840, 868, 871, 874, 942
BstX2I RGATCY 1 cut(s) 406
BstYI RGATCY 1 cut(s) 406
Bsu36I CCTNAGG 1 cut(s) 26
BsuRI GGCC 6 cut(s) 195, 365, 509, 763, 961, 1013
BtgI CCRYGG 1 cut(s) 601
BtsCI GGATG 7 cut(s) 262, 336, 346, 454, 664, 750, 982
BtsI GCAGTG 1 cut(s) 1032
BtsIMutI CAGTG 2 cut(s) 631, 1032
Cac8I GCNNGC 6 cut(s) 197, 487, 814, 851, 1003, 1023
CfoI GCGC 1 cut(s) 1021
Cfr10I RCCGGY 1 cut(s) 361
Cfr13I GGNCC 4 cut(s) 762, 780, 960, 979
Cfr9I CCCGGG 1 cut(s) 974
Csp6I GTAC 6 cut(s) 58, 129, 220, 317, 685, 738
CviAII CATG 6 cut(s) 124, 223, 682, 688, 790, 796
CviQI GTAC 6 cut(s) 58, 129, 220, 317, 685, 738
DdeI CTNAG 7 cut(s) 26, 302, 309, 398, 465, 501, 609
DpnI GATC 6 cut(s) 87, 93, 408, 571, 705, 875
DpnII GATC 6 cut(s) 85, 91, 406, 569, 703, 873
DrdI GACNNNNNNGTC 1 cut(s) 28
DseDI GACNNNNNNGTC 1 cut(s) 28
Eam1104I CTCTTC 2 cut(s) 270, 669
EarI CTCTTC 2 cut(s) 270, 669
Eco130I CCWWGG 2 cut(s) 190, 392
Eco147I AGGCCT 2 cut(s) 509, 1013
Eco47I GGWCC 2 cut(s) 780, 979
Eco57I CTGAAG 1 cut(s) 703
Eco81I CCTNAGG 1 cut(s) 26
Eco88I CYCGRG 2 cut(s) 974, 1060
EcoO109I RGGNCCY 1 cut(s) 780
EcoRII CCWGG 2 cut(s) 412, 1013
EcoT14I CCWWGG 2 cut(s) 190, 392
ErhI CCWWGG 2 cut(s) 190, 392
FaeI CATG 6 cut(s) 127, 226, 685, 691, 793, 799
FaqI GGGAC 3 cut(s) 766, 957, 992
FatI CATG 6 cut(s) 123, 222, 681, 687, 789, 795
FauI CCCGC 1 cut(s) 764
FbaI TGATCA 2 cut(s) 85, 703
FblI GTMKAC 1 cut(s) 909
Fnu4HI GCNGC 7 cut(s) 299, 324, 854, 857, 860, 863, 931
FokI GGATG 7 cut(s) 269, 343, 353, 441, 671, 757, 969
Fsp4HI GCNGC 7 cut(s) 299, 324, 854, 857, 860, 863, 931
FspBI CTAG 2 cut(s) 114, 393
GlaI GCGC 1 cut(s) 1020
GluI GCNGC 7 cut(s) 299, 324, 854, 857, 860, 863, 931
GsaI CCCAGC 1 cut(s) 330
HaeIII GGCC 6 cut(s) 195, 365, 509, 763, 961, 1013
HapII CCGG 4 cut(s) 362, 380, 620, 975
HhaI GCGC 1 cut(s) 1021
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 6 cut(s) 127, 226, 685, 691, 793, 799
Hin6I GCGC 1 cut(s) 1019
HinP1I GCGC 1 cut(s) 1019
HincII GTYRAC 2 cut(s) 336, 910
HindII GTYRAC 2 cut(s) 336, 910
HinfI GANTC 2 cut(s) 281, 347
HpaII CCGG 4 cut(s) 362, 380, 620, 975
HphI GGTGA 7 cut(s) 65, 161, 576, 582, 713, 763, 1038
Hpy166II GTNNAC 4 cut(s) 129, 336, 472, 910
Hpy188I TCNGA 3 cut(s) 10, 352, 504
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 4 cut(s) 129, 336, 472, 910
Hpy99I CGWCG 3 cut(s) 65, 77, 911
HpyAV CCTTC 5 cut(s) 44, 71, 386, 499, 888
HpyCH4III ACNGT 2 cut(s) 626, 907
HpyCH4V TGCA 7 cut(s) 46, 428, 454, 789, 816, 856, 1043
HpyF10VI GCNNNNNNNGC 8 cut(s) 103, 425, 506, 531, 729, 859, 862, 936
HpyF3I CTNAG 7 cut(s) 26, 302, 309, 398, 465, 501, 609
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 6 cut(s) 127, 226, 685, 691, 793, 799
HspAI GCGC 1 cut(s) 1019
Ksp22I TGATCA 2 cut(s) 85, 703
Kzo9I GATC 6 cut(s) 85, 91, 406, 569, 703, 873
LmnI GCTCC 4 cut(s) 432, 531, 605, 838
Lsp1109I GCAGC 6 cut(s) 335, 840, 868, 871, 874, 942
LweI GCATC 3 cut(s) 463, 1046, 1052
MaeI CTAG 2 cut(s) 114, 393
MaeIII GTNAC 3 cut(s) 225, 368, 710
MalI GATC 6 cut(s) 87, 93, 408, 571, 705, 875
MboI GATC 6 cut(s) 85, 91, 406, 569, 703, 873
MboII GAAGA 5 cut(s) 284, 287, 574, 650, 686
MflI RGATCY 1 cut(s) 406
MhlI GDGCHC 2 cut(s) 421, 843
MluCI AATT 3 cut(s) 136, 175, 940
MmeI TCCRAC 3 cut(s) 312, 375, 816
MseI TTAA 1 cut(s) 444
MslI CAYNNNNRTG 3 cut(s) 686, 692, 794
MspA1I CMGCKG 4 cut(s) 313, 326, 723, 933
MspI CCGG 4 cut(s) 362, 380, 620, 975
MspR9I CCNGG 4 cut(s) 414, 975, 976, 1015
Mva1269I GAATGC 1 cut(s) 435
MvaI CCWGG 2 cut(s) 414, 1015
MwoI GCNNNNNNNGC 8 cut(s) 103, 425, 506, 531, 729, 859, 862, 936
NciI CCSGG 2 cut(s) 975, 976
NdeII GATC 6 cut(s) 85, 91, 406, 569, 703, 873
NlaIII CATG 6 cut(s) 127, 226, 685, 691, 793, 799
NlaIV GGNNCC 3 cut(s) 360, 782, 980
NmeAIII GCCGAG 2 cut(s) 804, 862
NmuCI GTSAC 2 cut(s) 225, 710
NspI RCATGY 2 cut(s) 226, 685
PaeR7I CTCGAG 1 cut(s) 1060
PceI AGGCCT 2 cut(s) 509, 1013
PciI ACATGT 1 cut(s) 222
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 903
PctI GAATGC 1 cut(s) 435
PfeI GAWTC 2 cut(s) 281, 347
PkrI GCNGC 7 cut(s) 300, 325, 855, 858, 861, 864, 932
PpuMI RGGWCCY 1 cut(s) 780
PscI ACATGT 1 cut(s) 222
Psp5II RGGWCCY 1 cut(s) 780
Psp6I CCWGG 2 cut(s) 412, 1013
PspFI CCCAGC 1 cut(s) 326
PspGI CCWGG 2 cut(s) 412, 1013
PspN4I GGNNCC 3 cut(s) 360, 782, 980
PspPI GGNCC 4 cut(s) 762, 780, 960, 979
PspPPI RGGWCCY 1 cut(s) 780
PspXI VCTCGAGB 1 cut(s) 1060
PstI CTGCAG 1 cut(s) 858
PsuI RGATCY 1 cut(s) 406
PvuII CAGCTG 2 cut(s) 313, 326
RsaI GTAC 6 cut(s) 59, 130, 221, 318, 686, 739
RsaNI GTAC 6 cut(s) 58, 129, 220, 317, 685, 738
RseI CAYNNNNRTG 3 cut(s) 686, 692, 794
SalI GTCGAC 1 cut(s) 908
SaqAI TTAA 1 cut(s) 444
SatI GCNGC 7 cut(s) 299, 324, 854, 857, 860, 863, 931
Sau3AI GATC 6 cut(s) 85, 91, 406, 569, 703, 873
Sau96I GGNCC 4 cut(s) 762, 780, 960, 979
ScrFI CCNGG 4 cut(s) 414, 975, 976, 1015
SduI GDGCHC 2 cut(s) 421, 843
SfaNI GCATC 3 cut(s) 463, 1046, 1052
SfcI CTRYAG 1 cut(s) 854
Sfr274I CTCGAG 1 cut(s) 1060
SinI GGWCC 2 cut(s) 780, 979
SlaI CTCGAG 1 cut(s) 1060
SmaI CCCGGG 1 cut(s) 976
SmiMI CAYNNNNRTG 3 cut(s) 686, 692, 794
SmlI CTYRAG 3 cut(s) 511, 1007, 1060
SmoI CTYRAG 3 cut(s) 511, 1007, 1060
Sse9I AATT 3 cut(s) 136, 175, 940
SseBI AGGCCT 2 cut(s) 509, 1013
SsiI CCGC 6 cut(s) 298, 723, 771, 847, 933, 986
SspMI CTAG 2 cut(s) 114, 393
StuI AGGCCT 2 cut(s) 509, 1013
StyD4I CCNGG 4 cut(s) 412, 973, 974, 1013
StyI CCWWGG 2 cut(s) 190, 392
TaaI ACNGT 2 cut(s) 626, 907
TaqI TCGA 3 cut(s) 831, 909, 1061
TasI AATT 3 cut(s) 136, 175, 940
TatI WGTACW 2 cut(s) 219, 684
TauI GCSGC 1 cut(s) 301
TfiI GAWTC 2 cut(s) 281, 347
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TscAI CASTG 2 cut(s) 631, 1032
TseFI GTSAC 2 cut(s) 225, 710
TseI GCWGC 6 cut(s) 323, 853, 856, 859, 862, 930
Tsp45I GTSAC 2 cut(s) 225, 710
TspDTI ATGAA 5 cut(s) 176, 285, 510, 575, 704
TspGWI ACGGA 3 cut(s) 353, 371, 618
TspMI CCCGGG 1 cut(s) 974
TspRI CASTG 2 cut(s) 631, 1032
VpaK11BI GGWCC 2 cut(s) 780, 979
XceI RCATGY 2 cut(s) 226, 685
XcmI CCANNNNNNNNNTGG 1 cut(s) 203
XhoI CTCGAG 1 cut(s) 1060
XmaI CCCGGG 1 cut(s) 974
XmaJI CCTAGG 1 cut(s) 392
XmiI GTMKAC 1 cut(s) 909
XspI CTAG 2 cut(s) 114, 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.