RLG00000023140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0010914
Physical Location & Seq
Forward (+)
18744496 .. 18745728
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023140

Sequence Viewer

Length: 1068 bp
ATGGCGTCAGATGAGAGTATGAACCTCAGGTCTTGTATCTCTATGCAGGAAGGTGAGTACGACGATTATACCGACGAAGGGTATGATCAGGATCAGCCTCATCAGCACTTGTCTAGGTTGTCCATGTGTACCAGCAATTCCATCTATGGTGATGACCAGATGAATGATGATGGTAGTAGTAGCAATGGCAATTCCATCTACTACCAAGGCCAGCAGGAGAATGGTATGAGTTTGTACATGTCACTCTTGTCTATAGACAGCTTTGATGGGGATGGGGATGTTGATGAAGAAGAGGAATCGTCCAACAAGAAGCGGCTCAGTTCTCAGCTGGTACTCGCAGCTGGGATGTCAACGGATGACGATTCCGACTCGGAACCGGCCTGTTACTCCCTTCCGGCGACACCCCCTAGGCTGAGGAGGGATCTGCCTGGTGCTCGTGGTGCAGGGAGCATTCTTATTAACAAGGTGCATCCCAATTCTATGGTGGACACAGAGTACGCTAGCGAAAATGAAGCTCAGAAGGCCTTGAGTGATGACTGCAGGAGGAGCAGGAGGAGGAGTAGGAGGAGAATGATGAGGAACAGATCATCATGGCTATCACCATCACCATTCCACCATGGAGCTAAGACGACACCGGACAGTGATGATGATGGAGAAGATGAGGACAAGGAGGAGGAGAGCATGTATATGAATGTGTGTGGTGATCATTGTCACAGCTTCAGCGGAGAGAGTGAGGGTACGGGGATGGTGGTGATAGCAAGGCCCAAAGGAGGGAACAGGTCCCTCTGCATGGACATGGAGGAAGTCAAGGCTTGCAAAGACCTCGGCTTCGAGTTGGAGCACGATCGCATGCTGCAGCAGCAGCAGGAGATGATCCCTTCTCGGCTTTCTCTATCCGCCACCACCCTCGACACTAACTACACCACCAGCAGCGGTGGCAATTCCCCTATTGCCAACTGGCCCATTTCCAGTCCCGGGGACCATCCGCAGGAGGTCAAGGCTCGCCTCAAGGCCTGGGCGCAGGCAGTGGCTCTGGCATCTGCATCACCCACAAGGCACTTGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

356

Amino Acids

39.23

Weight (kDa)

4.64

Isoelectric Point (pI)

75.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010914)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46940 AT3G62070 AT4G01670
fragaria_vesca FvH4_1g26130
malus_domestica MD00G1137300.v1.1
prunus_persica Prupe.3G001400_v2.0.a1
pyrus_communis pycom03g07920
rosa_chinensis RchiOBHm_Chr3g0485631
rosa_laevigata RLG00000023140
rosa_multiflora Rmu_sc0001272.1_g000004 Rmu_sc0004711.1_g000006 Rmu_sc0036906.1_g000001
rosa_roxburghii Rroxscaffold_6G00396570 Rroxscaffold_6G00396880
rosa_rugosa Rorug03G0220300
rosa_samantha Rh3AG269000 Rh3BG304600 Rh3CG303200 Rh3DG299500
rosa_wichuraiana Rw3G023990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 313, 723, 897, 933, 986
AclWI GGATC 3 cut(s) 99, 429, 868
AcuI CTGAAG 1 cut(s) 703
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 6 cut(s) 59, 130, 236, 333, 497, 739
AfiI CCNNNNNNNGG 6 cut(s) 78, 770, 771, 790, 975, 988
AflIII ACRYGT 1 cut(s) 237
AjnI CCWGG 2 cut(s) 427, 1013
AluBI AGCT 7 cut(s) 261, 328, 341, 515, 623, 717, 1065
AluI AGCT 7 cut(s) 261, 328, 341, 515, 623, 717, 1065
Alw21I GWGCWC 2 cut(s) 436, 843
AlwI GGATC 3 cut(s) 99, 429, 868
Ama87I CYCGRG 1 cut(s) 974
AoxI GGCC 6 cut(s) 208, 378, 522, 761, 959, 1011
ApeKI GCWGC 6 cut(s) 338, 853, 856, 859, 862, 930
ArsI GACNNNNNNTTYG 2 cut(s) 812, 844
AspA2I CCTAGG 1 cut(s) 407
AspLEI GCGC 1 cut(s) 1021
AspS9I GGNCC 4 cut(s) 762, 780, 960, 979
AsuC2I CCSGG 2 cut(s) 975, 976
AsuHPI GGTGA 7 cut(s) 65, 161, 591, 597, 713, 763, 1038
AsuNHI GCTAGC 1 cut(s) 500
AvaI CYCGRG 1 cut(s) 974
AvaII GGWCC 2 cut(s) 780, 979
AvrII CCTAGG 1 cut(s) 407
AxyI CCTNAGG 1 cut(s) 26
BauI CACGAG 1 cut(s) 435
Bbv12I GWGCWC 2 cut(s) 436, 843
BbvCI CCTCAGC 1 cut(s) 413
BbvI GCAGC 6 cut(s) 350, 840, 868, 871, 874, 942
BccI CCATC 9 cut(s) 149, 164, 203, 260, 266, 610, 644, 739, 990
BcgI CGANNNNNNTGC 2 cut(s) 805, 839
BciT130I CCWGG 2 cut(s) 429, 1015
BclI TGATCA 2 cut(s) 85, 703
BcnI CCSGG 2 cut(s) 975, 976
BfaI CTAG 3 cut(s) 114, 408, 501
BfmI CTRYAG 3 cut(s) 252, 538, 854
BisI GCNGC 7 cut(s) 314, 339, 854, 857, 860, 863, 931
BlnI CCTAGG 1 cut(s) 407
BlsI GCNGC 7 cut(s) 315, 340, 855, 858, 861, 864, 932
Bme1390I CCNGG 4 cut(s) 429, 975, 976, 1015
Bme18I GGWCC 2 cut(s) 780, 979
BmeT110I CYCGRG 1 cut(s) 974
BmgT120I GGNCC 4 cut(s) 762, 780, 960, 979
BmiI GGNNCC 3 cut(s) 375, 782, 980
BmrFI CCNGG 4 cut(s) 429, 975, 976, 1015
BmsI GCATC 3 cut(s) 478, 1046, 1052
BmtI GCTAGC 1 cut(s) 504
Bpu10I CCTNAGC 1 cut(s) 413
BpuEI CTTGAG 2 cut(s) 547, 992
BpuMI CCSGG 2 cut(s) 975, 976
BsaBI GATNNNNATC 1 cut(s) 90
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 7 cut(s) 205, 407, 616, 823, 974, 975, 1014
BsaWI WCCGGW 1 cut(s) 634
BsaXI ACNNNNNCTCC 4 cut(s) 544, 574, 668, 698
Bsc4I CCNNNNNNNGG 6 cut(s) 78, 770, 771, 790, 975, 988
Bse118I RCCGGY 1 cut(s) 376
Bse1I ACTGG 2 cut(s) 962, 969
Bse21I CCTNAGG 1 cut(s) 26
Bse3DI GCAATG 1 cut(s) 190
Bse8I GATNNNNATC 1 cut(s) 90
BseBI CCWGG 2 cut(s) 429, 1015
BseDI CCNNGG 7 cut(s) 205, 407, 616, 823, 974, 975, 1014
BseGI GGATG 7 cut(s) 277, 283, 351, 361, 469, 750, 982
BseJI GATNNNNATC 1 cut(s) 90
BseLI CCNNNNNNNGG 6 cut(s) 78, 770, 771, 790, 975, 988
BseMI GCAATG 1 cut(s) 190
BseMII CTCAG 5 cut(s) 40, 331, 338, 404, 530
BseNI ACTGG 2 cut(s) 962, 969
BseRI GAGGAG 7 cut(s) 430, 559, 568, 571, 580, 686, 689
BseXI GCAGC 6 cut(s) 350, 840, 868, 871, 874, 942
BseYI CCCAGC 1 cut(s) 341
BsgI GTGCAG 1 cut(s) 462
Bsh1285I CGRYCG 1 cut(s) 847
BshFI GGCC 6 cut(s) 210, 380, 524, 763, 961, 1013
BsiEI CGRYCG 1 cut(s) 847
BsiHKAI GWGCWC 2 cut(s) 436, 843
BsiHKCI CYCGRG 1 cut(s) 974
BsiSI CCGG 4 cut(s) 377, 395, 635, 975
BslFI GGGAC 3 cut(s) 766, 957, 992
BslI CCNNNNNNNGG 6 cut(s) 78, 770, 771, 790, 975, 988
BsmFI GGGAC 3 cut(s) 766, 957, 992
BsmI GAATGC 1 cut(s) 450
BsnI GGCC 6 cut(s) 210, 380, 524, 763, 961, 1013
BsoBI CYCGRG 1 cut(s) 974
Bsp1286I GDGCHC 2 cut(s) 436, 843
Bsp1407I TGTACA 1 cut(s) 234
Bsp143I GATC 7 cut(s) 85, 91, 421, 584, 703, 844, 873
Bsp19I CCATGG 1 cut(s) 616
BspACI CCGC 5 cut(s) 313, 723, 897, 933, 986
BspANI GGCC 6 cut(s) 210, 380, 524, 763, 961, 1013
BspCNI CTCAG 5 cut(s) 39, 330, 337, 405, 529
BspLI GGNNCC 3 cut(s) 375, 782, 980
BspMAI CTGCAG 2 cut(s) 542, 858
BspOI GCTAGC 1 cut(s) 504
BspPI GGATC 3 cut(s) 99, 429, 868
BsrDI GCAATG 1 cut(s) 190
BsrFI RCCGGY 1 cut(s) 376
BsrGI TGTACA 1 cut(s) 234
BsrI ACTGG 2 cut(s) 962, 969
BssAI RCCGGY 1 cut(s) 376
BssECI CCNNGG 7 cut(s) 205, 407, 616, 823, 974, 975, 1014
BssMI GATC 7 cut(s) 85, 91, 421, 584, 703, 844, 873
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 435
BssT1I CCWWGG 3 cut(s) 205, 407, 616
Bst2BI CACGAG 1 cut(s) 435
Bst2UI CCWGG 2 cut(s) 429, 1015
Bst4CI ACNGT 1 cut(s) 641
Bst6I CTCTTC 1 cut(s) 285
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 234
BstC8I GCNNGC 6 cut(s) 212, 502, 814, 851, 1003, 1023
BstDEI CTNAG 6 cut(s) 26, 317, 324, 413, 516, 624
BstDSI CCRYGG 1 cut(s) 616
BstF5I GGATG 7 cut(s) 277, 283, 351, 361, 469, 750, 982
BstHHI GCGC 1 cut(s) 1021
BstKTI GATC 7 cut(s) 88, 94, 424, 587, 706, 847, 876
BstMBI GATC 7 cut(s) 85, 91, 421, 584, 703, 844, 873
BstMCI CGRYCG 1 cut(s) 847
BstMWI GCNNNNNNNGC 7 cut(s) 103, 440, 521, 546, 859, 862, 936
BstNI CCWGG 2 cut(s) 429, 1015
BstNSI RCATGY 3 cut(s) 241, 685, 853
BstSCI CCNGG 4 cut(s) 427, 973, 974, 1013
BstSFI CTRYAG 3 cut(s) 252, 538, 854
BstV1I GCAGC 6 cut(s) 350, 840, 868, 871, 874, 942
BstX2I RGATCY 1 cut(s) 421
BstXI CCANNNNNNTGG 1 cut(s) 481
BstYI RGATCY 1 cut(s) 421
Bsu36I CCTNAGG 1 cut(s) 26
BsuRI GGCC 6 cut(s) 210, 380, 524, 763, 961, 1013
BtgI CCRYGG 1 cut(s) 616
BtsCI GGATG 7 cut(s) 277, 283, 351, 361, 469, 750, 982
BtsI GCAGTG 1 cut(s) 1032
BtsIMutI CAGTG 2 cut(s) 646, 1032
Cac8I GCNNGC 6 cut(s) 212, 502, 814, 851, 1003, 1023
CfoI GCGC 1 cut(s) 1021
Cfr10I RCCGGY 1 cut(s) 376
Cfr13I GGNCC 4 cut(s) 762, 780, 960, 979
Cfr9I CCCGGG 1 cut(s) 974
Csp6I GTAC 6 cut(s) 58, 129, 235, 332, 496, 738
CviAII CATG 8 cut(s) 124, 238, 591, 617, 682, 790, 796, 850
CviQI GTAC 6 cut(s) 58, 129, 235, 332, 496, 738
DdeI CTNAG 6 cut(s) 26, 317, 324, 413, 516, 624
DpnI GATC 7 cut(s) 87, 93, 423, 586, 705, 846, 875
DpnII GATC 7 cut(s) 85, 91, 421, 584, 703, 844, 873
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
EciI GGCGGA 1 cut(s) 886
Eco130I CCWWGG 3 cut(s) 205, 407, 616
Eco147I AGGCCT 2 cut(s) 524, 1013
Eco47I GGWCC 2 cut(s) 780, 979
Eco57I CTGAAG 1 cut(s) 703
Eco81I CCTNAGG 1 cut(s) 26
Eco88I CYCGRG 1 cut(s) 974
EcoO109I RGGNCCY 1 cut(s) 780
EcoRII CCWGG 2 cut(s) 427, 1013
EcoT14I CCWWGG 3 cut(s) 205, 407, 616
ErhI CCWWGG 3 cut(s) 205, 407, 616
FaeI CATG 8 cut(s) 127, 241, 594, 620, 685, 793, 799, 853
FaqI GGGAC 3 cut(s) 766, 957, 992
FatI CATG 8 cut(s) 123, 237, 590, 616, 681, 789, 795, 849
FbaI TGATCA 2 cut(s) 85, 703
Fnu4HI GCNGC 7 cut(s) 314, 339, 854, 857, 860, 863, 931
FokI GGATG 7 cut(s) 284, 290, 358, 368, 456, 757, 969
Fsp4HI GCNGC 7 cut(s) 314, 339, 854, 857, 860, 863, 931
FspBI CTAG 3 cut(s) 114, 408, 501
GlaI GCGC 1 cut(s) 1020
GluI GCNGC 7 cut(s) 314, 339, 854, 857, 860, 863, 931
GsaI CCCAGC 1 cut(s) 345
HaeIII GGCC 6 cut(s) 210, 380, 524, 763, 961, 1013
HapII CCGG 4 cut(s) 377, 395, 635, 975
HhaI GCGC 1 cut(s) 1021
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 8 cut(s) 127, 241, 594, 620, 685, 793, 799, 853
Hin6I GCGC 1 cut(s) 1019
HinP1I GCGC 1 cut(s) 1019
HincII GTYRAC 1 cut(s) 351
HindII GTYRAC 1 cut(s) 351
HinfI GANTC 3 cut(s) 296, 362, 368
HpaII CCGG 4 cut(s) 377, 395, 635, 975
HphI GGTGA 7 cut(s) 65, 161, 591, 597, 713, 763, 1038
Hpy166II GTNNAC 3 cut(s) 129, 351, 487
Hpy188I TCNGA 4 cut(s) 10, 367, 373, 519
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 3 cut(s) 129, 351, 487
Hpy99I CGWCG 2 cut(s) 65, 77
HpyAV CCTTC 5 cut(s) 44, 71, 401, 514, 888
HpyCH4III ACNGT 1 cut(s) 641
HpyCH4V TGCA 8 cut(s) 46, 443, 469, 540, 789, 816, 856, 1043
HpyF10VI GCNNNNNNNGC 7 cut(s) 103, 440, 521, 546, 859, 862, 936
HpyF3I CTNAG 6 cut(s) 26, 317, 324, 413, 516, 624
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 8 cut(s) 127, 241, 594, 620, 685, 793, 799, 853
HspAI GCGC 1 cut(s) 1019
Ksp22I TGATCA 2 cut(s) 85, 703
Kzo9I GATC 7 cut(s) 85, 91, 421, 584, 703, 844, 873
LmnI GCTCC 4 cut(s) 447, 546, 620, 838
Lsp1109I GCAGC 6 cut(s) 350, 840, 868, 871, 874, 942
LweI GCATC 3 cut(s) 478, 1046, 1052
MaeI CTAG 3 cut(s) 114, 408, 501
MaeIII GTNAC 3 cut(s) 240, 383, 710
MalI GATC 7 cut(s) 87, 93, 423, 586, 705, 846, 875
MboI GATC 7 cut(s) 85, 91, 421, 584, 703, 844, 873
MboII GAAGA 3 cut(s) 299, 302, 668
MflI RGATCY 1 cut(s) 421
MhlI GDGCHC 2 cut(s) 436, 843
MluCI AATT 4 cut(s) 136, 190, 475, 940
MlyI GAGTC 1 cut(s) 362
MmeI TCCRAC 3 cut(s) 327, 390, 816
MseI TTAA 1 cut(s) 459
MslI CAYNNNNRTG 2 cut(s) 686, 794
MspA1I CMGCKG 4 cut(s) 328, 341, 723, 933
MspI CCGG 4 cut(s) 377, 395, 635, 975
MspR9I CCNGG 4 cut(s) 429, 975, 976, 1015
Mva1269I GAATGC 1 cut(s) 450
MvaI CCWGG 2 cut(s) 429, 1015
MwoI GCNNNNNNNGC 7 cut(s) 103, 440, 521, 546, 859, 862, 936
NciI CCSGG 2 cut(s) 975, 976
NcoI CCATGG 1 cut(s) 616
NdeII GATC 7 cut(s) 85, 91, 421, 584, 703, 844, 873
NheI GCTAGC 1 cut(s) 500
NlaIII CATG 8 cut(s) 127, 241, 594, 620, 685, 793, 799, 853
NlaIV GGNNCC 3 cut(s) 375, 782, 980
NmeAIII GCCGAG 2 cut(s) 804, 862
NmuCI GTSAC 2 cut(s) 240, 710
NspI RCATGY 3 cut(s) 241, 685, 853
PaeI GCATGC 1 cut(s) 853
PceI AGGCCT 2 cut(s) 524, 1013
PciI ACATGT 1 cut(s) 237
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PctI GAATGC 1 cut(s) 450
PfeI GAWTC 2 cut(s) 296, 362
PkrI GCNGC 7 cut(s) 315, 340, 855, 858, 861, 864, 932
Ple19I CGATCG 1 cut(s) 847
PleI GAGTC 1 cut(s) 362
PpsI GAGTC 1 cut(s) 362
PpuMI RGGWCCY 1 cut(s) 780
PscI ACATGT 1 cut(s) 237
Psp5II RGGWCCY 1 cut(s) 780
Psp6I CCWGG 2 cut(s) 427, 1013
PspFI CCCAGC 1 cut(s) 341
PspGI CCWGG 2 cut(s) 427, 1013
PspN4I GGNNCC 3 cut(s) 375, 782, 980
PspPI GGNCC 4 cut(s) 762, 780, 960, 979
PspPPI RGGWCCY 1 cut(s) 780
PstI CTGCAG 2 cut(s) 542, 858
PsuI RGATCY 1 cut(s) 421
PvuI CGATCG 1 cut(s) 847
PvuII CAGCTG 2 cut(s) 328, 341
RsaI GTAC 6 cut(s) 59, 130, 236, 333, 497, 739
RsaNI GTAC 6 cut(s) 58, 129, 235, 332, 496, 738
RseI CAYNNNNRTG 2 cut(s) 686, 794
SaqAI TTAA 1 cut(s) 459
SatI GCNGC 7 cut(s) 314, 339, 854, 857, 860, 863, 931
Sau3AI GATC 7 cut(s) 85, 91, 421, 584, 703, 844, 873
Sau96I GGNCC 4 cut(s) 762, 780, 960, 979
SchI GAGTC 1 cut(s) 362
ScrFI CCNGG 4 cut(s) 429, 975, 976, 1015
SduI GDGCHC 2 cut(s) 436, 843
SfaNI GCATC 3 cut(s) 478, 1046, 1052
SfcI CTRYAG 3 cut(s) 252, 538, 854
SinI GGWCC 2 cut(s) 780, 979
SmaI CCCGGG 1 cut(s) 976
SmiMI CAYNNNNRTG 2 cut(s) 686, 794
SmlI CTYRAG 3 cut(s) 526, 1007, 1060
SmoI CTYRAG 3 cut(s) 526, 1007, 1060
SphI GCATGC 1 cut(s) 853
Sse9I AATT 4 cut(s) 136, 190, 475, 940
SseBI AGGCCT 2 cut(s) 524, 1013
SsiI CCGC 5 cut(s) 313, 723, 897, 933, 986
SspMI CTAG 3 cut(s) 114, 408, 501
StuI AGGCCT 2 cut(s) 524, 1013
StyD4I CCNGG 4 cut(s) 427, 973, 974, 1013
StyI CCWWGG 3 cut(s) 205, 407, 616
TaaI ACNGT 1 cut(s) 641
TaqI TCGA 2 cut(s) 831, 909
TasI AATT 4 cut(s) 136, 190, 475, 940
TatI WGTACW 1 cut(s) 234
TauI GCSGC 1 cut(s) 316
TfiI GAWTC 2 cut(s) 296, 362
Tru1I TTAA 1 cut(s) 459
Tru9I TTAA 1 cut(s) 459
TscAI CASTG 2 cut(s) 646, 1032
TseFI GTSAC 2 cut(s) 240, 710
TseI GCWGC 6 cut(s) 338, 853, 856, 859, 862, 930
Tsp45I GTSAC 2 cut(s) 240, 710
TspDTI ATGAA 5 cut(s) 35, 176, 300, 525, 704
TspGWI ACGGA 1 cut(s) 368
TspMI CCCGGG 1 cut(s) 974
TspRI CASTG 2 cut(s) 646, 1032
VpaK11BI GGWCC 2 cut(s) 780, 979
XceI RCATGY 3 cut(s) 241, 685, 853
XcmI CCANNNNNNNNNTGG 2 cut(s) 218, 481
XmaI CCCGGG 1 cut(s) 974
XmaJI CCTAGG 1 cut(s) 407
XspI CTAG 3 cut(s) 114, 408, 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.