FvH4_1g26130

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0010914
Physical Location & Seq
Reverse (-)
17996309 .. 17998764
2456 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26130.t1

Sequence Viewer

Length: 1041 bp
ATGGCGTCAGATGAGAGTATGACACTTAGGTCTTGTATCGAGTATGATGAGGATACAGATGAAGGGTATGATCATGATCAGCCTCATCCTCACTTGTCTAGGTTGTCCATGTGTACCAACAATTCCATGTATGGTGAAGATCAGATGATGAGTGATGAACATGAAGGCGCTGGCAATGACAATTCCATGTACTACCAGGGGCAACAAGAGAATGGTATGAGTATGTACATGTCACTGTTGTCCATAGACAGCTTTGATGGGGATGTTGATGAAGAAGAGGAAACATCCAACAAGAAGAGGCTCAATTCTCAACTGGTACTGGCAGCTGAGATGTCAACGGAGGACGATTCCGACAGGGAACCGGGGTGTTACTCGCTTCCGGCCACACCCCCTAGGCGGAGGAGGGATCTGGCTGCTGGTGCAGGGAGGATGCTTTTTAACAAGGTCCATCCCAGTTCTATGGTGGAGAAAGAGTATGCAAGCGAAAATGAAGCTCAAAAGGCTATGAGTGATGACAGCAGGAGGAGCAGGAGGAGGAGCAGGAGGAGGATGATGAGGAACAGATCATCATGGCTATCACCATCACCATTCCACCATGGAGCTAAGACGGCGATGGACGACGATGATGGTGAAGATCATGACAAGGAGGAGGAGAACATGAACATGAACATGTGTGGTGATCACTGTCACAGCTTCAGCGGAGAGAGCGAGGGTACTGGGATGGTGATGATAGCAAGGCCTAAAGGAGGGAAGAGGTCGCTTTGCATGGACATGGAAGAAGTGAAGGCTTGCAGAGACCTTGGATTCGAGTTGGAGCACGACCGCATGCTGCAGCAGCAGGAGATGATGCCCTCACGAATTTCTCTATCAGCCCCCACCCTTGAAACTAACTACACTACCAGCAGCGGTGGCAACTCCCCCATTGCCAACTGGCGCATTTCCAGTCCCGGAGACCATCCGCAAGATGTCAAGGCTCGCCTCAAGGTCTGGGCGCAGGCAGTAGCTCTGGCATCTGCATCACCCACAAGGCACTCGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

347

Amino Acids

38.94

Weight (kDa)

4.94

Isoelectric Point (pI)

81.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010914)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46940 AT3G62070 AT4G01670
fragaria_vesca FvH4_1g26130
malus_domestica MD00G1137300.v1.1
prunus_persica Prupe.3G001400_v2.0.a1
pyrus_communis pycom03g07920
rosa_chinensis RchiOBHm_Chr3g0485631
rosa_laevigata RLG00000023140
rosa_multiflora Rmu_sc0001272.1_g000004 Rmu_sc0004711.1_g000006 Rmu_sc0036906.1_g000001
rosa_roxburghii Rroxscaffold_6G00396570 Rroxscaffold_6G00396880
rosa_rugosa Rorug03G0220300
rosa_samantha Rh3AG269000 Rh3BG304600 Rh3CG303200 Rh3DG299500
rosa_wichuraiana Rw3G023990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 28
AciI CCGC 5 cut(s) 397, 699, 823, 906, 959
AclWI GGATC 1 cut(s) 414
AcoI YGGCCR 1 cut(s) 381
AcsI RAATTY 1 cut(s) 858
AcuI CTGAAG 1 cut(s) 679
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 5 cut(s) 115, 191, 227, 318, 715
AfiI CCNNNNNNNGG 2 cut(s) 396, 746
AflIII ACRYGT 2 cut(s) 228, 669
AgsI TTSAA 1 cut(s) 884
AjnI CCWGG 1 cut(s) 195
AluBI AGCT 7 cut(s) 252, 326, 494, 602, 693, 1004, 1038
AluI AGCT 7 cut(s) 252, 326, 494, 602, 693, 1004, 1038
Alw21I GWGCWC 1 cut(s) 819
Alw26I GTCTC 2 cut(s) 789, 945
AlwI GGATC 1 cut(s) 414
Ama87I CYCGRG 1 cut(s) 1033
AoxI GGCC 2 cut(s) 381, 737
ApeKI GCWGC 6 cut(s) 323, 413, 829, 832, 835, 903
ApoI RAATTY 1 cut(s) 858
ArsI GACNNNNNNTTYG 2 cut(s) 788, 820
AspA2I CCTAGG 1 cut(s) 392
AspLEI GCGC 3 cut(s) 170, 936, 994
AspS9I GGNCC 1 cut(s) 445
AsuC2I CCSGG 2 cut(s) 363, 948
AsuHPI GGTGA 7 cut(s) 146, 570, 576, 641, 689, 736, 1011
AvaI CYCGRG 1 cut(s) 1033
AvaII GGWCC 1 cut(s) 445
AvrII CCTAGG 1 cut(s) 392
Bbv12I GWGCWC 1 cut(s) 819
BbvI GCAGC 6 cut(s) 335, 400, 816, 844, 847, 915
BccI CCATC 7 cut(s) 251, 456, 589, 607, 620, 715, 963
BceAI ACGGC 1 cut(s) 624
BciT130I CCWGG 1 cut(s) 197
BciVI GTATCC 1 cut(s) 46
BclI TGATCA 3 cut(s) 70, 76, 679
BcnI CCSGG 2 cut(s) 363, 948
BcoDI GTCTC 2 cut(s) 789, 945
BfaI CTAG 2 cut(s) 99, 393
BfmI CTRYAG 1 cut(s) 830
BfoI RGCGCY 1 cut(s) 171
BfuI GTATCC 1 cut(s) 46
BisI GCNGC 6 cut(s) 324, 414, 830, 833, 836, 904
BlnI CCTAGG 1 cut(s) 392
BlsI GCNGC 6 cut(s) 325, 415, 831, 834, 837, 905
Bme1390I CCNGG 3 cut(s) 197, 363, 948
Bme18I GGWCC 1 cut(s) 445
BmeT110I CYCGRG 1 cut(s) 1033
BmgT120I GGNCC 1 cut(s) 445
BmiI GGNNCC 1 cut(s) 360
BmrFI CCNGG 3 cut(s) 197, 363, 948
BmrI ACTGGG 2 cut(s) 447, 726
BmsI GCATC 4 cut(s) 420, 837, 1019, 1025
BmuI ACTGGG 2 cut(s) 447, 726
BpuEI CTTGAG 1 cut(s) 965
BpuMI CCSGG 2 cut(s) 363, 948
BsaBI GATNNNNATC 1 cut(s) 75
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 2 cut(s) 789, 945
BsaJI CCNNGG 5 cut(s) 196, 362, 392, 595, 799
BsaXI ACNNNNNCTCC 2 cut(s) 458, 488
Bsc4I CCNNNNNNNGG 2 cut(s) 396, 746
Bse1I ACTGG 6 cut(s) 318, 324, 453, 721, 935, 942
Bse3DI GCAATG 2 cut(s) 181, 921
Bse8I GATNNNNATC 1 cut(s) 75
BseBI CCWGG 1 cut(s) 197
BseDI CCNNGG 5 cut(s) 196, 362, 392, 595, 799
BseGI GGATG 8 cut(s) 85, 268, 284, 435, 448, 555, 726, 955
BseJI GATNNNNATC 1 cut(s) 75
BseLI CCNNNNNNNGG 2 cut(s) 396, 746
BseMI GCAATG 2 cut(s) 181, 921
BseMII CTCAG 1 cut(s) 318
BseNI ACTGG 6 cut(s) 318, 324, 453, 721, 935, 942
BseRI GAGGAG 7 cut(s) 415, 538, 547, 550, 559, 662, 665
BseXI GCAGC 6 cut(s) 335, 400, 816, 844, 847, 915
BsgI GTGCAG 1 cut(s) 441
Bsh1285I CGRYCG 1 cut(s) 823
BshFI GGCC 2 cut(s) 383, 739
BsiEI CGRYCG 1 cut(s) 823
BsiHKAI GWGCWC 1 cut(s) 819
BsiHKCI CYCGRG 1 cut(s) 1033
BsiSI CCGG 3 cut(s) 362, 380, 948
BslFI GGGAC 1 cut(s) 930
BslI CCNNNNNNNGG 2 cut(s) 396, 746
BsmAI GTCTC 2 cut(s) 789, 945
BsmFI GGGAC 1 cut(s) 930
BsnI GGCC 2 cut(s) 383, 739
Bso31I GGTCTC 2 cut(s) 789, 945
BsoBI CYCGRG 1 cut(s) 1033
Bsp1286I GDGCHC 1 cut(s) 819
Bsp1407I TGTACA 1 cut(s) 225
Bsp143I GATC 7 cut(s) 70, 76, 139, 406, 563, 634, 679
Bsp19I CCATGG 1 cut(s) 595
BspACI CCGC 5 cut(s) 397, 699, 823, 906, 959
BspANI GGCC 2 cut(s) 383, 739
BspCNI CTCAG 1 cut(s) 319
BspHI TCATGA 2 cut(s) 73, 637
BspLI GGNNCC 1 cut(s) 360
BspMAI CTGCAG 1 cut(s) 834
BspPI GGATC 1 cut(s) 414
BspTNI GGTCTC 2 cut(s) 789, 945
BsrDI GCAATG 2 cut(s) 181, 921
BsrGI TGTACA 1 cut(s) 225
BsrI ACTGG 6 cut(s) 318, 324, 453, 721, 935, 942
BssECI CCNNGG 5 cut(s) 196, 362, 392, 595, 799
BssMI GATC 7 cut(s) 70, 76, 139, 406, 563, 634, 679
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 3 cut(s) 392, 595, 799
Bst2UI CCWGG 1 cut(s) 197
Bst4CI ACNGT 2 cut(s) 237, 686
Bst6I CTCTTC 3 cut(s) 270, 290, 746
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 225
BstC8I GCNNGC 6 cut(s) 172, 481, 790, 827, 976, 996
BstDEI CTNAG 3 cut(s) 26, 327, 603
BstDSI CCRYGG 1 cut(s) 595
BstENI CCTNNNNNAGG 1 cut(s) 744
BstF5I GGATG 8 cut(s) 85, 268, 284, 435, 448, 555, 726, 955
BstH2I RGCGCY 1 cut(s) 171
BstHHI GCGC 3 cut(s) 170, 936, 994
BstKTI GATC 7 cut(s) 73, 79, 142, 409, 566, 637, 682
BstMAI GTCTC 2 cut(s) 789, 945
BstMBI GATC 7 cut(s) 70, 76, 139, 406, 563, 634, 679
BstMCI CGRYCG 1 cut(s) 823
BstMWI GCNNNNNNNGC 7 cut(s) 419, 500, 525, 608, 705, 835, 909
BstNI CCWGG 1 cut(s) 197
BstNSI RCATGY 3 cut(s) 232, 673, 829
BstSCI CCNGG 3 cut(s) 195, 361, 946
BstSFI CTRYAG 1 cut(s) 830
BstV1I GCAGC 6 cut(s) 335, 400, 816, 844, 847, 915
BstX2I RGATCY 1 cut(s) 406
BstXI CCANNNNNNTGG 1 cut(s) 460
BstYI RGATCY 1 cut(s) 406
BsuI GTATCC 1 cut(s) 46
BsuRI GGCC 2 cut(s) 383, 739
BtgI CCRYGG 1 cut(s) 595
BtgZI GCGATG 1 cut(s) 626
BtsCI GGATG 8 cut(s) 85, 268, 284, 435, 448, 555, 726, 955
BtsIMutI CAGTG 2 cut(s) 233, 682
Cac8I GCNNGC 6 cut(s) 172, 481, 790, 827, 976, 996
CciI TCATGA 2 cut(s) 73, 637
CfoI GCGC 3 cut(s) 170, 936, 994
Cfr13I GGNCC 1 cut(s) 445
Csp6I GTAC 5 cut(s) 114, 190, 226, 317, 714
CviQI GTAC 5 cut(s) 114, 190, 226, 317, 714
DdeI CTNAG 3 cut(s) 26, 327, 603
DpnI GATC 7 cut(s) 72, 78, 141, 408, 565, 636, 681
DpnII GATC 7 cut(s) 70, 76, 139, 406, 563, 634, 679
DrdI GACNNNNNNGTC 1 cut(s) 28
DseDI GACNNNNNNGTC 1 cut(s) 28
EaeI YGGCCR 1 cut(s) 381
Eam1104I CTCTTC 3 cut(s) 270, 290, 746
EarI CTCTTC 3 cut(s) 270, 290, 746
EciI GGCGGA 1 cut(s) 412
Eco130I CCWWGG 3 cut(s) 392, 595, 799
Eco147I AGGCCT 1 cut(s) 739
Eco31I GGTCTC 2 cut(s) 789, 945
Eco47I GGWCC 1 cut(s) 445
Eco57I CTGAAG 1 cut(s) 679
Eco88I CYCGRG 1 cut(s) 1033
EcoNI CCTNNNNNAGG 1 cut(s) 744
EcoRII CCWGG 1 cut(s) 195
EcoT14I CCWWGG 3 cut(s) 392, 595, 799
ErhI CCWWGG 3 cut(s) 392, 595, 799
FaqI GGGAC 1 cut(s) 930
FbaI TGATCA 3 cut(s) 70, 76, 679
Fnu4HI GCNGC 6 cut(s) 324, 414, 830, 833, 836, 904
FokI GGATG 8 cut(s) 72, 271, 275, 435, 442, 562, 733, 942
Fsp4HI GCNGC 6 cut(s) 324, 414, 830, 833, 836, 904
FspBI CTAG 2 cut(s) 99, 393
GlaI GCGC 3 cut(s) 169, 935, 993
GluI GCNGC 6 cut(s) 324, 414, 830, 833, 836, 904
HaeII RGCGCY 1 cut(s) 171
HaeIII GGCC 2 cut(s) 383, 739
HapII CCGG 3 cut(s) 362, 380, 948
HhaI GCGC 3 cut(s) 170, 936, 994
Hin1I GRCGYC 1 cut(s) 5
Hin6I GCGC 3 cut(s) 168, 934, 992
HinP1I GCGC 3 cut(s) 168, 934, 992
HincII GTYRAC 1 cut(s) 336
HindII GTYRAC 1 cut(s) 336
HinfI GANTC 2 cut(s) 347, 804
HpaII CCGG 3 cut(s) 362, 380, 948
HphI GGTGA 7 cut(s) 146, 570, 576, 641, 689, 736, 1011
Hpy166II GTNNAC 2 cut(s) 114, 336
Hpy188I TCNGA 3 cut(s) 10, 144, 352
Hpy188III TCNNGA 3 cut(s) 74, 638, 855
Hpy8I GTNNAC 2 cut(s) 114, 336
Hpy99I CGWCG 1 cut(s) 623
HpyAV CCTTC 3 cut(s) 56, 158, 778
HpyCH4III ACNGT 2 cut(s) 237, 686
HpyCH4V TGCA 6 cut(s) 422, 479, 765, 792, 832, 1016
HpyF10VI GCNNNNNNNGC 7 cut(s) 419, 500, 525, 608, 705, 835, 909
HpyF3I CTNAG 3 cut(s) 26, 327, 603
Hsp92I GRCGYC 1 cut(s) 5
HspAI GCGC 3 cut(s) 168, 934, 992
Ksp22I TGATCA 3 cut(s) 70, 76, 679
Kzo9I GATC 7 cut(s) 70, 76, 139, 406, 563, 634, 679
LmnI GCTCC 4 cut(s) 525, 537, 599, 814
Lsp1109I GCAGC 6 cut(s) 335, 400, 816, 844, 847, 915
LweI GCATC 4 cut(s) 420, 837, 1019, 1025
MaeI CTAG 2 cut(s) 99, 393
MaeIII GTNAC 3 cut(s) 231, 368, 686
MalI GATC 7 cut(s) 72, 78, 141, 408, 565, 636, 681
MboI GATC 7 cut(s) 70, 76, 139, 406, 563, 634, 679
MboII GAAGA 7 cut(s) 149, 284, 287, 307, 644, 763, 788
MflI RGATCY 1 cut(s) 406
MhlI GDGCHC 1 cut(s) 819
MluCI AATT 4 cut(s) 121, 181, 304, 858
MmeI TCCRAC 3 cut(s) 312, 375, 792
MseI TTAA 1 cut(s) 438
MslI CAYNNNNRTG 3 cut(s) 662, 668, 770
MspA1I CMGCKG 3 cut(s) 326, 699, 906
MspI CCGG 3 cut(s) 362, 380, 948
MspR9I CCNGG 3 cut(s) 197, 363, 948
MvaI CCWGG 1 cut(s) 197
MwoI GCNNNNNNNGC 7 cut(s) 419, 500, 525, 608, 705, 835, 909
NciI CCSGG 2 cut(s) 363, 948
NcoI CCATGG 1 cut(s) 595
NdeII GATC 7 cut(s) 70, 76, 139, 406, 563, 634, 679
NlaIV GGNNCC 1 cut(s) 360
NmuCI GTSAC 2 cut(s) 231, 686
NspI RCATGY 3 cut(s) 232, 673, 829
PaeI GCATGC 1 cut(s) 829
PaeR7I CTCGAG 1 cut(s) 1033
PagI TCATGA 2 cut(s) 73, 637
PceI AGGCCT 1 cut(s) 739
PciI ACATGT 2 cut(s) 228, 669
PfeI GAWTC 2 cut(s) 347, 804
PfoI TCCNGGA 1 cut(s) 946
PkrI GCNGC 6 cut(s) 325, 415, 831, 834, 837, 905
PscI ACATGT 2 cut(s) 228, 669
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 360
PspPI GGNCC 1 cut(s) 445
PspXI VCTCGAGB 1 cut(s) 1033
PstI CTGCAG 1 cut(s) 834
PsuI RGATCY 1 cut(s) 406
PvuII CAGCTG 1 cut(s) 326
RsaI GTAC 5 cut(s) 115, 191, 227, 318, 715
RsaNI GTAC 5 cut(s) 114, 190, 226, 317, 714
RseI CAYNNNNRTG 3 cut(s) 662, 668, 770
SaqAI TTAA 1 cut(s) 438
SatI GCNGC 6 cut(s) 324, 414, 830, 833, 836, 904
Sau3AI GATC 7 cut(s) 70, 76, 139, 406, 563, 634, 679
Sau96I GGNCC 1 cut(s) 445
ScrFI CCNGG 3 cut(s) 197, 363, 948
SduI GDGCHC 1 cut(s) 819
SfaNI GCATC 4 cut(s) 420, 837, 1019, 1025
SfcI CTRYAG 1 cut(s) 830
Sfr274I CTCGAG 1 cut(s) 1033
SinI GGWCC 1 cut(s) 445
SlaI CTCGAG 1 cut(s) 1033
SmiMI CAYNNNNRTG 3 cut(s) 662, 668, 770
SmlI CTYRAG 2 cut(s) 980, 1033
SmoI CTYRAG 2 cut(s) 980, 1033
SphI GCATGC 1 cut(s) 829
Sse9I AATT 4 cut(s) 121, 181, 304, 858
SseBI AGGCCT 1 cut(s) 739
SsiI CCGC 5 cut(s) 397, 699, 823, 906, 959
SspMI CTAG 2 cut(s) 99, 393
StuI AGGCCT 1 cut(s) 739
StyD4I CCNGG 3 cut(s) 195, 361, 946
StyI CCWWGG 3 cut(s) 392, 595, 799
TaaI ACNGT 2 cut(s) 237, 686
TaqI TCGA 3 cut(s) 39, 807, 1034
TasI AATT 4 cut(s) 121, 181, 304, 858
TatI WGTACW 2 cut(s) 189, 225
TfiI GAWTC 2 cut(s) 347, 804
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TscAI CASTG 2 cut(s) 240, 689
TseFI GTSAC 2 cut(s) 231, 686
TseI GCWGC 6 cut(s) 323, 413, 829, 832, 835, 903
Tsp45I GTSAC 2 cut(s) 231, 686
TspDTI ATGAA 7 cut(s) 75, 171, 177, 285, 504, 674, 680
TspGWI ACGGA 1 cut(s) 353
TspRI CASTG 2 cut(s) 240, 689
VpaK11BI GGWCC 1 cut(s) 445
XagI CCTNNNNNAGG 1 cut(s) 744
XapI RAATTY 1 cut(s) 858
XceI RCATGY 3 cut(s) 232, 673, 829
XcmI CCANNNNNNNNNTGG 1 cut(s) 460
XhoI CTCGAG 1 cut(s) 1033
XmaJI CCTAGG 1 cut(s) 392
XspI CTAG 2 cut(s) 99, 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.