Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006185

Physical Location & Seq

Genomic Coordinates Forward (+)

793177 .. 795237

Gene Structure 2061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G01840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGAACCACTCATCAGCCCACAACCACGTTTCCGCCTCCAACCCATACCGGAAAATCCCTCCTCCTCCTCCTCCTCCGCCTCCATCACAATCCCTCGCTCTATCTCAAACACTTCCTTCTTCCATGAAATCTCCCAAGAACGTCTTCTCCTTCATCATCAAGACCTCGAACAATCCGTACAAGACGACAAAGAAGACCAAGACTCAGACTCAGACGAAACAAATCGCTTTTTATCTCAGACAAGACCACTTCACCGATCTCGTACAGCTCCAGCTATGGTAATCATCAAAGACTTAAGAACCAAACCTCCAGAAACCAAAAAACCATCACCAGTCTCTAAATCCATAATCAGACAAGCGATTTTCTTGCTAATCGTCTACTTAACCTTAGGCGTTTCAATCTACTCATTCAATCGTGACCACTACTCAGGAATCGAAACCCATCCTGTAGTCGACGCTCTCTATTTCTGTATCGTCACTATGTGTACTATTGGTTACGGTGACATCGCTCCGTTGACTCCATGGACAAAGATCTTCGCTGTTGTTTTCGTCTTGTTCGGATTCGGGTTCTTGGATATTTTACTCAGTGGTGTTGTTAACTACGTTTTGGATCTTCAAGAGAGTATGATTCTCACCGGAATCCAAACGAGGCAGCATCATCAACACCATCATCATCATAGATTCTCTGCTAAAGATTATATTATTGATTTTGAGAAAGGGAGGATGAGGATAAGGATGAAAGTTTGTTTAGCGTTATGCGTCGTCGTTTTGTGTATCGGTGTTGGTGCTTTGGTTTTGCATTTCGTTGAGGAATTGGGTTTTGTTGATTCGGTTTATTTGTCGGTTATGTCGGTGACTACTGTTGGTTATGGTGATCGTGCTTTTAAAACGCTTCAAGGGAGGCTTTTTGCGGCGGTTTGGCTACTTGTTTCGACTCTTGCGGTGGCGCGTGCGTTTTTGTATTTGGCGGAAGCGAGAATTGATCGCCGGCATCGGAAAGCTGTTAAATTGGCGTTGAATAGAGAAATCACTGTTGATGATTTGCTCAAAGCTGATACTTATCAACATGGTTTCATCAGTAAATCAGAGTATATAGTGTTGAAGCTTAAGGAAATGGGGAAGATCACTCAGAAAGACATTGACCAAGTTGTGATTCAGTTCGAGAAACTTGATCCTAATCAAATAGGAAAAATCACATTACCTGATCTTTTGGGGGATCCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009705 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022840 GO:0022841 GO:0022842 GO:0022857 GO:0022890 GO:0030001 GO:0030322 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ion_trans_2

Protein Analysis

408

Amino Acids

46.26

Weight (kDa)

7.74

Isoelectric Point (pI)

32.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	121 - 201	3.6e-06	Ion transport protein
Ion_trans_2	PF07885	123 - 202	8.1e-16	Ion channel
Ion_trans_2	PF07885	254 - 324	6.1e-12	Ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01840
fragaria_vesca	FvH4_1g26310 FvH4_1g26310
malus_domestica	MD09G1289500.v1.1 MD17G1284200.v1.1
prunus_persica	Prupe.3G003200_v2.0.a1 Prupe.3G003200_v2.0.a1 Prupe.5G044500_v2.0.a1
pyrus_communis	pycom09g19750 pycom14g08130 pycom17g28020
rosa_chinensis	RchiOBHm_Chr1g0333551 RchiOBHm_Chr3g0485981
rosa_laevigata	RLG00000023117 RLG00000035326
rosa_multiflora	Rmu_sc0003151.1_g000035 Rmu_sc0004032.1_g000015 Rmu_sc0009687.1_g000001 Rmu_sc0041532.1_g000001
rosa_roxburghii	Rroxscaffold_6G00396140
rosa_rugosa	Rorug03G0223100
rosa_samantha	Rh3AG272700 Rh3BG307400 Rh3CG306000 Rh3DG302300
rosa_wichuraiana	Rw3G024180 Rw6G027690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	378, 453
AccII	CGCG	1 cut(s)	949
AciI	CCGC	6 cut(s)	34, 78, 911, 914, 941, 968
AclWI	GGATC	4 cut(s)	618, 1166, 1211, 1224
AdeI	CACNNNGTG	1 cut(s)	483
AfaI	GTAC	3 cut(s)	180, 265, 487
AflII	CTTAAG	2 cut(s)	295, 1106
AgsI	TTSAA	6 cut(s)	399, 412, 617, 896, 1018, 1102
AjuI	GAANNNNNNNTTGG	4 cut(s)	129, 161, 1137, 1169
AloI	GAACNNNNNNTCC	4 cut(s)	132, 164, 292, 324
AluBI	AGCT	5 cut(s)	269, 275, 1001, 1052, 1105
AluI	AGCT	5 cut(s)	269, 275, 1001, 1052, 1105
Alw26I	GTCTC	1 cut(s)	340
AlwI	GGATC	4 cut(s)	618, 1166, 1211, 1224
ApeKI	GCWGC	1 cut(s)	652
Asp700I	GAANNNNTTC	1 cut(s)	144
AspLEI	GCGC	1 cut(s)	949
AsuHPI	GGTGA	6 cut(s)	245, 321, 512, 625, 865, 884
AxyI	CCTNAGG	1 cut(s)	388
BamHI	GGATCC	1 cut(s)	1216
BbsI	GAAGAC	2 cut(s)	137, 201
BbvI	GCAGC	1 cut(s)	664
BccI	CCATC	4 cut(s)	92, 334, 450, 675
BcgI	CGANNNNNNTGC	2 cut(s)	349, 383
BcoDI	GTCTC	1 cut(s)	340
BfmI	CTRYAG	1 cut(s)	447
BfrI	CTTAAG	2 cut(s)	295, 1106
BglII	AGATCT	1 cut(s)	531
BisI	GCNGC	2 cut(s)	653, 912
BlsI	GCNGC	2 cut(s)	654, 913
BmiI	GGNNCC	2 cut(s)	6, 1218
BmsI	GCATC	2 cut(s)	664, 1000
BpiI	GAAGAC	2 cut(s)	137, 201
BpmI	CTGGAG	2 cut(s)	255, 294
BsaBI	GATNNNNATC	2 cut(s)	1059, 1176
BsaJI	CCNNGG	1 cut(s)	521
BsaWI	WCCGGW	2 cut(s)	49, 635
BsaXI	ACNNNNNCTCC	4 cut(s)	132, 162, 292, 322
Bse118I	RCCGGY	1 cut(s)	987
Bse1I	ACTGG	1 cut(s)	332
Bse21I	CCTNAGG	1 cut(s)	388
Bse8I	GATNNNNATC	2 cut(s)	1059, 1176
BseDI	CCNNGG	1 cut(s)	521
BseGI	GGATG	3 cut(s)	442, 729, 741
BseJI	GATNNNNATC	2 cut(s)	1059, 1176
BseMII	CTCAG	6 cut(s)	219, 225, 251, 441, 598, 1142
BseNI	ACTGG	1 cut(s)	332
BseRI	GAGGAG	5 cut(s)	52, 55, 58, 61, 64
BseXI	GCAGC	1 cut(s)	664
Bsh1236I	CGCG	1 cut(s)	949
BsiSI	CCGG	3 cut(s)	50, 636, 988
BsmAI	GTCTC	1 cut(s)	340
Bsp143I	GATC	9 cut(s)	257, 531, 610, 874, 982, 1122, 1171, 1204, 1216
Bsp19I	CCATGG	1 cut(s)	521
BspACI	CCGC	6 cut(s)	34, 78, 911, 914, 941, 968
BspCNI	CTCAG	6 cut(s)	218, 224, 250, 440, 597, 1141
BspFNI	CGCG	1 cut(s)	949
BspLI	GGNNCC	2 cut(s)	6, 1218
BspPI	GGATC	4 cut(s)	618, 1166, 1211, 1224
BspTI	CTTAAG	2 cut(s)	295, 1106
BsrFI	RCCGGY	1 cut(s)	987
BsrI	ACTGG	1 cut(s)	332
BssAI	RCCGGY	1 cut(s)	987
BssECI	CCNNGG	1 cut(s)	521
BssMI	GATC	9 cut(s)	257, 531, 610, 874, 982, 1122, 1171, 1204, 1216
BssT1I	CCWWGG	1 cut(s)	521
Bst4CI	ACNGT	3 cut(s)	500, 862, 1033
BstAFI	CTTAAG	2 cut(s)	295, 1106
BstC8I	GCNNGC	2 cut(s)	951, 989
BstDEI	CTNAG	7 cut(s)	205, 211, 237, 388, 427, 584, 1128
BstDSI	CCRYGG	1 cut(s)	521
BstF5I	GGATG	3 cut(s)	442, 729, 741
BstFNI	CGCG	1 cut(s)	949
BstHHI	GCGC	1 cut(s)	949
BstKTI	GATC	9 cut(s)	260, 534, 613, 877, 985, 1125, 1174, 1207, 1219
BstMAI	GTCTC	1 cut(s)	340
BstMBI	GATC	9 cut(s)	257, 531, 610, 874, 982, 1122, 1171, 1204, 1216
BstSFI	CTRYAG	1 cut(s)	447
BstUI	CGCG	1 cut(s)	949
BstV1I	GCAGC	1 cut(s)	664
BstV2I	GAAGAC	2 cut(s)	137, 201
BstX2I	RGATCY	3 cut(s)	531, 610, 1216
BstYI	RGATCY	3 cut(s)	531, 610, 1216
Bsu36I	CCTNAGG	1 cut(s)	388
BtgI	CCRYGG	1 cut(s)	521
BtgZI	GCGATG	1 cut(s)	490
BtsCI	GGATG	3 cut(s)	442, 729, 741
BtsIMutI	CAGTG	2 cut(s)	592, 1029
Cac8I	GCNNGC	2 cut(s)	951, 989
CfoI	GCGC	1 cut(s)	949
Cfr10I	RCCGGY	1 cut(s)	987
CseI	GACGC	2 cut(s)	464, 748
Csp6I	GTAC	3 cut(s)	179, 264, 486
CviAII	CATG	3 cut(s)	125, 522, 1067
CviJI	RGCY	8 cut(s)	18, 269, 275, 904, 922, 1001, 1052, 1105
CviKI_1	RGCY	8 cut(s)	18, 269, 275, 904, 922, 1001, 1052, 1105
CviQI	GTAC	3 cut(s)	179, 264, 486
DdeI	CTNAG	7 cut(s)	205, 211, 237, 388, 427, 584, 1128
DpnI	GATC	9 cut(s)	259, 533, 612, 876, 984, 1124, 1173, 1206, 1218
DpnII	GATC	9 cut(s)	257, 531, 610, 874, 982, 1122, 1171, 1204, 1216
DraI	TTTAAA	1 cut(s)	886
DraIII	CACNNNGTG	1 cut(s)	483
EciI	GGCGGA	3 cut(s)	23, 67, 983
Eco130I	CCWWGG	1 cut(s)	521
Eco81I	CCTNAGG	1 cut(s)	388
EcoT14I	CCWWGG	1 cut(s)	521
ErhI	CCWWGG	1 cut(s)	521
FaeI	CATG	3 cut(s)	128, 525, 1070
FalI	AAGNNNNNCTT	4 cut(s)	129, 161, 888, 920
FatI	CATG	3 cut(s)	124, 521, 1066
FblI	GTMKAC	2 cut(s)	378, 453
Fnu4HI	GCNGC	2 cut(s)	653, 912
FokI	GGATG	3 cut(s)	429, 736, 748
Fsp4HI	GCNGC	2 cut(s)	653, 912
GlaI	GCGC	1 cut(s)	948
GluI	GCNGC	2 cut(s)	653, 912
GsuI	CTGGAG	2 cut(s)	255, 294
HapII	CCGG	3 cut(s)	50, 636, 988
HgaI	GACGC	2 cut(s)	464, 748
HhaI	GCGC	1 cut(s)	949
Hin1II	CATG	3 cut(s)	128, 525, 1070
Hin6I	GCGC	1 cut(s)	947
HinP1I	GCGC	1 cut(s)	947
HincII	GTYRAC	3 cut(s)	454, 516, 598
HindII	GTYRAC	3 cut(s)	454, 516, 598
HindIII	AAGCTT	1 cut(s)	1103
HpaI	GTTAAC	1 cut(s)	598
HpaII	CCGG	3 cut(s)	50, 636, 988
HphI	GGTGA	6 cut(s)	245, 321, 512, 625, 865, 884
Hpy166II	GTNNAC	5 cut(s)	379, 454, 486, 516, 598
Hpy188I	TCNGA	8 cut(s)	208, 214, 240, 353, 560, 996, 1087, 1131
Hpy188III	TCNNGA	6 cut(s)	161, 311, 416, 429, 617, 1162
Hpy8I	GTNNAC	5 cut(s)	379, 454, 486, 516, 598
Hpy99I	CGWCG	3 cut(s)	458, 764, 767
HpyAV	CCTTC	2 cut(s)	127, 161
HpyCH4III	ACNGT	3 cut(s)	500, 862, 1033
HpyCH4IV	ACGT	3 cut(s)	28, 142, 603
HpyCH4V	TGCA	1 cut(s)	799
HpyF3I	CTNAG	7 cut(s)	205, 211, 237, 388, 427, 584, 1128
HpySE526I	ACGT	3 cut(s)	28, 142, 603
Hsp92II	CATG	3 cut(s)	128, 525, 1070
HspAI	GCGC	1 cut(s)	947
KroI	GCCGGC	1 cut(s)	987
KroNI	GCCGGC	1 cut(s)	989
KspAI	GTTAAC	1 cut(s)	598
Kzo9I	GATC	9 cut(s)	257, 531, 610, 874, 982, 1122, 1171, 1204, 1216
LmnI	GCTCC	2 cut(s)	274, 514
LpnPI	CCDG	9 cut(s)	63, 285, 324, 345, 414, 459, 649, 1001, 1215
Lsp1109I	GCAGC	1 cut(s)	664
LweI	GCATC	2 cut(s)	664, 1000
MaeII	ACGT	3 cut(s)	28, 142, 603
MaeIII	GTNAC	5 cut(s)	416, 475, 494, 500, 853
MalI	GATC	9 cut(s)	259, 533, 612, 876, 984, 1124, 1173, 1206, 1218
MboI	GATC	9 cut(s)	257, 531, 610, 874, 982, 1122, 1171, 1204, 1216
MboII	GAAGA	6 cut(s)	112, 137, 206, 526, 605, 1132
MflI	RGATCY	3 cut(s)	531, 610, 1216
MluCI	AATT	3 cut(s)	812, 978, 1007
MlyI	GAGTC	4 cut(s)	197, 203, 511, 928
MmeI	TCCRAC	1 cut(s)	64
MroNI	GCCGGC	1 cut(s)	987
MroXI	GAANNNNTTC	1 cut(s)	144
MseI	TTAA	6 cut(s)	296, 383, 597, 885, 1005, 1107
MspCI	CTTAAG	2 cut(s)	295, 1106
MspI	CCGG	3 cut(s)	50, 636, 988
MvnI	CGCG	1 cut(s)	949
NaeI	GCCGGC	1 cut(s)	989
NcoI	CCATGG	1 cut(s)	521
NdeII	GATC	9 cut(s)	257, 531, 610, 874, 982, 1122, 1171, 1204, 1216
NgoMIV	GCCGGC	1 cut(s)	987
NlaIII	CATG	3 cut(s)	128, 525, 1070
NlaIV	GGNNCC	2 cut(s)	6, 1218
NmuCI	GTSAC	4 cut(s)	416, 475, 500, 853
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PdiI	GCCGGC	1 cut(s)	989
PdmI	GAANNNNTTC	1 cut(s)	144
PfeI	GAWTC	7 cut(s)	432, 561, 628, 639, 681, 827, 1153
PkrI	GCNGC	2 cut(s)	654, 913
PleI	GAGTC	4 cut(s)	197, 203, 511, 928
PpsI	GAGTC	4 cut(s)	197, 203, 511, 928
PspN4I	GGNNCC	2 cut(s)	6, 1218
PsrI	GAACNNNNNNTAC	2 cut(s)	162, 194
PsuI	RGATCY	3 cut(s)	531, 610, 1216
RsaI	GTAC	3 cut(s)	180, 265, 487
RsaNI	GTAC	3 cut(s)	179, 264, 486
SalI	GTCGAC	1 cut(s)	452
SaqAI	TTAA	6 cut(s)	296, 383, 597, 885, 1005, 1107
SatI	GCNGC	2 cut(s)	653, 912
Sau3AI	GATC	9 cut(s)	257, 531, 610, 874, 982, 1122, 1171, 1204, 1216
SchI	GAGTC	4 cut(s)	197, 203, 511, 928
SfaNI	GCATC	2 cut(s)	664, 1000
SfcI	CTRYAG	1 cut(s)	447
SmlI	CTYRAG	2 cut(s)	295, 1106
SmoI	CTYRAG	2 cut(s)	295, 1106
Sse9I	AATT	3 cut(s)	812, 978, 1007
SsiI	CCGC	6 cut(s)	34, 78, 911, 914, 941, 968
StyI	CCWWGG	1 cut(s)	521
TaaI	ACNGT	3 cut(s)	500, 862, 1033
TaiI	ACGT	3 cut(s)	31, 145, 606
TaqI	TCGA	5 cut(s)	168, 435, 453, 932, 1161
TasI	AATT	3 cut(s)	812, 978, 1007
TatI	WGTACW	1 cut(s)	485
TauI	GCSGC	1 cut(s)	914
TfiI	GAWTC	7 cut(s)	432, 561, 628, 639, 681, 827, 1153
Tru1I	TTAA	6 cut(s)	296, 383, 597, 885, 1005, 1107
Tru9I	TTAA	6 cut(s)	296, 383, 597, 885, 1005, 1107
TscAI	CASTG	2 cut(s)	592, 1036
TseFI	GTSAC	4 cut(s)	416, 475, 500, 853
TseI	GCWGC	1 cut(s)	652
Tsp45I	GTSAC	4 cut(s)	416, 475, 500, 853
TspDTI	ATGAA	4 cut(s)	141, 143, 752, 1063
TspGWI	ACGGA	2 cut(s)	166, 501
TspRI	CASTG	2 cut(s)	592, 1036
Vha464I	CTTAAG	2 cut(s)	295, 1106
XmiI	GTMKAC	2 cut(s)	378, 453
XmnI	GAANNNNTTC	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.