Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0006185

Physical Location & Seq

Genomic Coordinates Reverse (-)

8591822 .. 8592437

Gene Structure 616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g08130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGAAGAGGGGGCTCCTCTAAGCCCATGCTCAAAGTCCCAAACTCTGATCGAAATAGGCAAAAATAAGCATACGTTTGAAGCAAAGTTTATGAGTTTCAACCACCGTCTTATCTACTTACCGCCACTCTCCCTCCACCGTCCAAAGTCCAAACTCCAAAGTCCAAGGTCCAAACCGAGAGATAGAATCTATTCCCTTATTTTTCCCGATGGAAAGGGAGCCTTTTCTCGGCTCCCAAACAGGACCCCAACACCAACTCCTCCAACCCACCCCCACCAAGTCCCTGACTCTGATGATTTCTCTTTCAAAATCTCTCCCTCCCACAGCGAGCCTAATCTCCACCACCTCCAACAACCCCACCATCACCAGGTCCACCAACCAGACCCGCAGCCCTCTTCGTCAGGAGCCCCGAATGCCCGTCATCAGAAAAGACCCGGCACTCTCTACCGCTGCAGGACGGCCCCCGCTATGGCCGTCATGCGAGACCTCAATCCACACCCAACAACCCAGCCTCGAGGAGCTCTGCAACAAGATCGCTCTGCGACGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009705 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022840 GO:0022841 GO:0022842 GO:0022857 GO:0022890 GO:0030001 GO:0030322 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ion_trans_2

Protein Analysis

184

Amino Acids

20.61

Weight (kDa)

10.08

Isoelectric Point (pI)

59.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01840
fragaria_vesca	FvH4_1g26310 FvH4_1g26310
malus_domestica	MD09G1289500.v1.1 MD17G1284200.v1.1
prunus_persica	Prupe.3G003200_v2.0.a1 Prupe.3G003200_v2.0.a1 Prupe.5G044500_v2.0.a1
pyrus_communis	pycom09g19750 pycom14g08130 pycom17g28020
rosa_chinensis	RchiOBHm_Chr1g0333551 RchiOBHm_Chr3g0485981
rosa_laevigata	RLG00000023117 RLG00000035326
rosa_multiflora	Rmu_sc0003151.1_g000035 Rmu_sc0004032.1_g000015 Rmu_sc0009687.1_g000001 Rmu_sc0041532.1_g000001
rosa_roxburghii	Rroxscaffold_6G00396140
rosa_rugosa	Rorug03G0223100
rosa_samantha	Rh3AG272700 Rh3BG307400 Rh3CG306000 Rh3DG302300
rosa_wichuraiana	Rw3G024180 Rw6G027690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	513
AciI	CCGC	4 cut(s)	122, 386, 448, 465
AcoI	YGGCCR	1 cut(s)	471
AfiI	CCNNNNNNNGG	3 cut(s)	228, 367, 469
AflIII	ACRYGT	1 cut(s)	545
AgsI	TTSAA	3 cut(s)	80, 100, 307
AjiI	CACGTC	1 cut(s)	546
AjnI	CCWGG	1 cut(s)	366
AluBI	AGCT	1 cut(s)	521
AluI	AGCT	1 cut(s)	521
Alw21I	GWGCWC	1 cut(s)	523
Alw26I	GTCTC	1 cut(s)	477
Ama87I	CYCGRG	1 cut(s)	513
AoxI	GGCC	2 cut(s)	459, 471
ApeKI	GCWGC	2 cut(s)	388, 450
Asp700I	GAANNNNTTC	1 cut(s)	190
AspS9I	GGNCC	4 cut(s)	168, 243, 370, 460
AsuC2I	CCSGG	1 cut(s)	435
AsuHPI	GGTGA	1 cut(s)	356
AvaI	CYCGRG	1 cut(s)	513
AvaII	GGWCC	3 cut(s)	168, 243, 370
BanII	GRGCYC	3 cut(s)	16, 409, 523
Bbv12I	GWGCWC	1 cut(s)	523
BbvI	GCAGC	2 cut(s)	400, 437
BccI	CCATC	2 cut(s)	203, 369
BceAI	ACGGC	2 cut(s)	458, 474
BcgI	CGANNNNNNTGC	2 cut(s)	515, 549
BciT130I	CCWGG	1 cut(s)	368
BcnI	CCSGG	1 cut(s)	435
BcoDI	GTCTC	1 cut(s)	477
BfmI	CTRYAG	1 cut(s)	451
BisI	GCNGC	2 cut(s)	389, 451
BlsI	GCNGC	2 cut(s)	390, 452
Bme1390I	CCNGG	2 cut(s)	368, 435
Bme18I	GGWCC	3 cut(s)	168, 243, 370
BmeT110I	CYCGRG	1 cut(s)	513
BmgBI	CACGTC	1 cut(s)	546
BmgT120I	GGNCC	4 cut(s)	168, 243, 370, 460
BmiI	GGNNCC	6 cut(s)	15, 220, 233, 245, 406, 462
BmrFI	CCNGG	2 cut(s)	368, 435
BpuMI	CCSGG	1 cut(s)	435
BsaI	GGTCTC	1 cut(s)	477
BsaJI	CCNNGG	1 cut(s)	164
BsaXI	ACNNNNNCTCC	4 cut(s)	117, 147, 241, 271
Bsc4I	CCNNNNNNNGG	3 cut(s)	228, 367, 469
BseBI	CCWGG	1 cut(s)	368
BseDI	CCNNGG	1 cut(s)	164
BseLI	CCNNNNNNNGG	3 cut(s)	228, 367, 469
BseRI	GAGGAG	3 cut(s)	6, 249, 531
BseXI	GCAGC	2 cut(s)	400, 437
BseYI	CCCAGC	1 cut(s)	507
BshFI	GGCC	2 cut(s)	461, 473
BsiHKAI	GWGCWC	1 cut(s)	523
BsiHKCI	CYCGRG	1 cut(s)	513
BsiSI	CCGG	1 cut(s)	435
BslFI	GGGAC	2 cut(s)	22, 266
BslI	CCNNNNNNNGG	3 cut(s)	228, 367, 469
BsmAI	GTCTC	1 cut(s)	477
BsmFI	GGGAC	2 cut(s)	22, 266
BsmI	GAATGC	1 cut(s)	418
BsnI	GGCC	2 cut(s)	461, 473
Bso31I	GGTCTC	1 cut(s)	477
BsoBI	CYCGRG	1 cut(s)	513
Bsp1286I	GDGCHC	3 cut(s)	16, 409, 523
Bsp143I	GATC	2 cut(s)	48, 532
BspACI	CCGC	4 cut(s)	122, 386, 448, 465
BspANI	GGCC	2 cut(s)	461, 473
BspLI	GGNNCC	6 cut(s)	15, 220, 233, 245, 406, 462
BspMAI	CTGCAG	1 cut(s)	455
BspTNI	GGTCTC	1 cut(s)	477
BssECI	CCNNGG	1 cut(s)	164
BssMI	GATC	2 cut(s)	48, 532
BssT1I	CCWWGG	1 cut(s)	164
Bst2UI	CCWGG	1 cut(s)	368
Bst4CI	ACNGT	2 cut(s)	107, 140
Bst6I	CTCTTC	1 cut(s)	400
BstC8I	GCNNGC	1 cut(s)	329
BstDEI	CTNAG	1 cut(s)	20
BstKTI	GATC	2 cut(s)	51, 535
BstMAI	GTCTC	1 cut(s)	477
BstMBI	GATC	2 cut(s)	48, 532
BstMWI	GCNNNNNNNGC	1 cut(s)	413
BstNI	CCWGG	1 cut(s)	368
BstSCI	CCNGG	2 cut(s)	366, 433
BstSFI	CTRYAG	1 cut(s)	451
BstV1I	GCAGC	2 cut(s)	400, 437
BsuRI	GGCC	2 cut(s)	461, 473
BtrI	CACGTC	1 cut(s)	546
Cac8I	GCNNGC	1 cut(s)	329
Cfr13I	GGNCC	4 cut(s)	168, 243, 370, 460
CsiI	ACCWGGT	1 cut(s)	366
CviAII	CATG	2 cut(s)	27, 478
DdeI	CTNAG	1 cut(s)	20
DpnI	GATC	2 cut(s)	50, 534
DpnII	GATC	2 cut(s)	48, 532
EaeI	YGGCCR	1 cut(s)	471
Eam1104I	CTCTTC	1 cut(s)	400
EarI	CTCTTC	1 cut(s)	400
Ecl136II	GAGCTC	1 cut(s)	521
Eco130I	CCWWGG	1 cut(s)	164
Eco24I	GRGCYC	3 cut(s)	16, 409, 523
Eco31I	GGTCTC	1 cut(s)	477
Eco47I	GGWCC	3 cut(s)	168, 243, 370
Eco53kI	GAGCTC	1 cut(s)	521
Eco88I	CYCGRG	1 cut(s)	513
EcoICRI	GAGCTC	1 cut(s)	521
EcoO109I	RGGNCCY	1 cut(s)	243
EcoRII	CCWGG	1 cut(s)	366
EcoT14I	CCWWGG	1 cut(s)	164
EcoT38I	GRGCYC	3 cut(s)	16, 409, 523
ErhI	CCWWGG	1 cut(s)	164
FaeI	CATG	2 cut(s)	30, 481
FaiI	YATR	5 cut(s)	28, 72, 92, 470, 479
FalI	AAGNNNNNCTT	2 cut(s)	206, 238
FaqI	GGGAC	2 cut(s)	22, 266
FatI	CATG	2 cut(s)	26, 477
FauI	CCCGC	2 cut(s)	393, 472
Fnu4HI	GCNGC	2 cut(s)	389, 451
FriOI	GRGCYC	3 cut(s)	16, 409, 523
Fsp4HI	GCNGC	2 cut(s)	389, 451
GluI	GCNGC	2 cut(s)	389, 451
GsaI	CCCAGC	1 cut(s)	511
HaeIII	GGCC	2 cut(s)	461, 473
HapII	CCGG	1 cut(s)	435
Hin1II	CATG	2 cut(s)	30, 481
HinfI	GANTC	2 cut(s)	186, 287
HpaII	CCGG	1 cut(s)	435
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	3 cut(s)	48, 292, 426
Hpy188III	TCNNGA	2 cut(s)	206, 402
Hpy8I	GTNNAC	1 cut(s)	373
Hpy99I	CGWCG	1 cut(s)	547
HpyCH4III	ACNGT	2 cut(s)	107, 140
HpyCH4IV	ACGT	2 cut(s)	74, 545
HpyCH4V	TGCA	2 cut(s)	453, 526
HpyF10VI	GCNNNNNNNGC	1 cut(s)	413
HpyF3I	CTNAG	1 cut(s)	20
HpySE526I	ACGT	2 cut(s)	74, 545
Hsp92II	CATG	2 cut(s)	30, 481
Kzo9I	GATC	2 cut(s)	48, 532
LmnI	GCTCC	5 cut(s)	19, 218, 237, 404, 518
LpnPI	CCDG	9 cut(s)	226, 297, 353, 380, 387, 393, 439, 448, 521
Lsp1109I	GCAGC	2 cut(s)	400, 437
MabI	ACCWGGT	1 cut(s)	366
MaeII	ACGT	2 cut(s)	74, 545
MalI	GATC	2 cut(s)	50, 534
MboI	GATC	2 cut(s)	48, 532
MboII	GAAGA	2 cut(s)	17, 387
MhlI	GDGCHC	3 cut(s)	16, 409, 523
MlyI	GAGTC	1 cut(s)	281
MmeI	TCCRAC	2 cut(s)	287, 373
MnlI	CCTC	9 cut(s)	27, 143, 270, 328, 356, 403, 497, 509, 522
MroXI	GAANNNNTTC	1 cut(s)	190
MspA1I	CMGCKG	1 cut(s)	450
MspI	CCGG	1 cut(s)	435
MspR9I	CCNGG	2 cut(s)	368, 435
Mva1269I	GAATGC	1 cut(s)	418
MvaI	CCWGG	1 cut(s)	368
MwoI	GCNNNNNNNGC	1 cut(s)	413
NciI	CCSGG	1 cut(s)	435
NdeII	GATC	2 cut(s)	48, 532
NlaIII	CATG	2 cut(s)	30, 481
NlaIV	GGNNCC	6 cut(s)	15, 220, 233, 245, 406, 462
NmeAIII	GCCGAG	1 cut(s)	208
PaeR7I	CTCGAG	1 cut(s)	513
PctI	GAATGC	1 cut(s)	418
PdmI	GAANNNNTTC	1 cut(s)	190
PfeI	GAWTC	1 cut(s)	186
PkrI	GCNGC	2 cut(s)	390, 452
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
PpuMI	RGGWCCY	1 cut(s)	243
Psp124BI	GAGCTC	1 cut(s)	523
Psp5II	RGGWCCY	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	366
PspFI	CCCAGC	1 cut(s)	507
PspGI	CCWGG	1 cut(s)	366
PspN4I	GGNNCC	6 cut(s)	15, 220, 233, 245, 406, 462
PspPI	GGNCC	4 cut(s)	168, 243, 370, 460
PspPPI	RGGWCCY	1 cut(s)	243
PspXI	VCTCGAGB	1 cut(s)	513
PstI	CTGCAG	1 cut(s)	455
SacI	GAGCTC	1 cut(s)	523
SatI	GCNGC	2 cut(s)	389, 451
Sau3AI	GATC	2 cut(s)	48, 532
Sau96I	GGNCC	4 cut(s)	168, 243, 370, 460
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	2 cut(s)	368, 435
SduI	GDGCHC	3 cut(s)	16, 409, 523
SetI	ASST	7 cut(s)	77, 170, 348, 372, 489, 523, 548
SexAI	ACCWGGT	1 cut(s)	366
SfcI	CTRYAG	1 cut(s)	451
Sfr274I	CTCGAG	1 cut(s)	513
SinI	GGWCC	3 cut(s)	168, 243, 370
SlaI	CTCGAG	1 cut(s)	513
SmlI	CTYRAG	1 cut(s)	513
SmoI	CTYRAG	1 cut(s)	513
SsiI	CCGC	4 cut(s)	122, 386, 448, 465
SstI	GAGCTC	1 cut(s)	523
StyD4I	CCNGG	2 cut(s)	366, 433
StyI	CCWWGG	1 cut(s)	164
TaaI	ACNGT	2 cut(s)	107, 140
TaiI	ACGT	2 cut(s)	77, 548
TaqI	TCGA	2 cut(s)	51, 514
TfiI	GAWTC	1 cut(s)	186
TseI	GCWGC	2 cut(s)	388, 450
VpaK11BI	GGWCC	3 cut(s)	168, 243, 370
XhoI	CTCGAG	1 cut(s)	513
XmnI	GAANNNNTTC	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.