Rh3CG306000

Potassium channel

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Forward (+)
31941987 .. 31944689
2703 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG306000.1

Sequence Viewer

Length: 1209 bp
ATGGAGAATGAGCCCTTTCTCTCCTCCCCACCCCCACTTGAACCCATCATTGAGGACCCTCATGATTTCTCTTTCAATCTCCCTCCTCCCCTCACCGACCCAATTGTGCTTCTCTTACAAGAACCCCCACAACACCAACATGATGAAATACACCAAGACCCACATCCCTCTTCATCGTCTTCCTCATCTTCCGGACCCCGGAATGCCCCGACCCGCAAACCCACCATTCTCCAGCGATGCAAGACCGCCCCGGCCATGGCTGTCATGCGAGACCTGAAGCCAAAGACGGCCCAGGTCCCCAAGCCACAGTCCGAGACCAGCTCCATCATCAGACAAGCTGTGTTGTTACTCGTCATGTATCTCTCTCTCGGTGTTGTAATATACTCTTTCAACAGGGACAAGTTCTCCGGTTCGGAAACCCACCCCGTGGTTGACGCCCTCTACTTTTGTATAGTCACCATGTGCACGATTGGGTACGGCGACATTGCTCCGGAAACGCCGCTGGCTAAGGTGTTTTCGTGTGTGTTTGTGTTGGTGGGGTTTGGGTTTATTGACATCTTGCTTAGTGGGGTGGTCAATTATGTGCTGGACTTGCAAGAGCACATAATCTTGACCGGAATCCAAATGAGTCATCACCACCACCACCACGGCAGCAAAAGCCACCATGGATTTTCGGACTACATTGTTGATGTGGCCAAGGGGAGGATGAGGATCAGACTCAAAGTGGGTCTGGCGCTTGGTGTGGTGGTGATGTGCATTGGCATTGGGGCTCTGGTTTTGTGTTTTTTGGAGGATTTGGATTGGGTTGATTCCATTTATTTGTCTGTTATGTCGGTTACAACTGTTGGGTATGGGGACAAGGCCTTCAAGTCGCTGCCGGGGCGGCTTTTCGCGGCGGTTTGGCTTCTGTTTTCGACACTGGCGGTGGCGAGAGCCTTTTTGTATTTGGCAGAGGCGAGGGTGGATAAGAGACACAGGAAAATTGTCAAGTGGGTATTGCATAGGGAGATCACTGTCCAGGATTTGCTTGCTGCTGACATCAATAACCATGGCTTCATCAGCAAATCAGAGTATATTGTTTACAAGCTCAAAGAGATGGGAAAGATAGATGAGAAAGATATAATGCAAATCTGCGATCAGTTCAGTAAGCTTGATTCAAACCACTCTGGGAAGATAACACTGCCCGATTTGTTGGAGAATCGCTTCTAA

Protein Analysis

402

Amino Acids

44.9

Weight (kDa)

6.54

Isoelectric Point (pI)

33.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 114 - 194 5.7e-07 Ion transport protein
Ion_trans_2 PF07885 116 - 195 8.7e-17 Ion channel
Ion_trans_2 PF07885 249 - 318 6.6e-12 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 427
AccII CGCG 1 cut(s) 893
AccIII TCCGGA 2 cut(s) 191, 490
AciI CCGC 7 cut(s) 214, 246, 500, 883, 893, 896, 923
AclWI GGATC 1 cut(s) 719
AcoI YGGCCR 2 cut(s) 252, 693
AcuI CTGAAG 1 cut(s) 296
AcyI GRCGYC 1 cut(s) 435
AdeI CACNNNGTG 2 cut(s) 427, 462
AfaI GTAC 1 cut(s) 476
AfiI CCNNNNNNNGG 4 cut(s) 198, 256, 427, 702
AgsI TTSAA 5 cut(s) 41, 76, 391, 868, 1158
AjnI CCWGG 2 cut(s) 291, 1017
AluBI AGCT 4 cut(s) 321, 338, 1087, 1150
AluI AGCT 4 cut(s) 321, 338, 1087, 1150
Alw21I GWGCWC 2 cut(s) 467, 603
Alw26I GTCTC 3 cut(s) 264, 308, 964
Alw44I GTGCAC 1 cut(s) 463
AlwI GGATC 1 cut(s) 719
Aor13HI TCCGGA 2 cut(s) 191, 490
AoxI GGCC 4 cut(s) 252, 288, 693, 861
ApaLI GTGCAC 1 cut(s) 463
ApeKI GCWGC 3 cut(s) 651, 874, 1031
Asp700I GAANNNNTTC 1 cut(s) 1202
AspLEI GCGC 1 cut(s) 736
AspS9I GGNCC 4 cut(s) 55, 194, 289, 295
AsuC2I CCSGG 3 cut(s) 199, 251, 879
AsuHPI GGTGA 4 cut(s) 85, 448, 626, 760
AvaII GGWCC 3 cut(s) 55, 194, 295
BaeGI GKGCMC 1 cut(s) 467
BalI TGGCCA 1 cut(s) 695
BanII GRGCYC 2 cut(s) 15, 772
BbsI GAAGAC 1 cut(s) 171
Bbv12I GWGCWC 2 cut(s) 467, 603
BbvI GCAGC 3 cut(s) 663, 861, 1018
BccI CCATC 3 cut(s) 53, 332, 1090
BceAI ACGGC 3 cut(s) 303, 493, 664
BciT130I CCWGG 2 cut(s) 293, 1019
BcnI CCSGG 3 cut(s) 199, 251, 879
BcoDI GTCTC 3 cut(s) 264, 308, 964
BfoI RGCGCY 1 cut(s) 737
BglI GCCNNNNNGGC 1 cut(s) 883
BisI GCNGC 6 cut(s) 500, 652, 875, 884, 894, 1032
BlsI GCNGC 6 cut(s) 501, 653, 876, 885, 895, 1033
Bme1390I CCNGG 5 cut(s) 199, 251, 293, 879, 1019
Bme18I GGWCC 3 cut(s) 55, 194, 295
BmgT120I GGNCC 4 cut(s) 55, 194, 289, 295
BmiI GGNNCC 3 cut(s) 57, 196, 297
BmrFI CCNGG 5 cut(s) 199, 251, 293, 879, 1019
BmsI GCATC 1 cut(s) 227
BpiI GAAGAC 1 cut(s) 171
BplI GAGNNNNNCTC 2 cut(s) 305, 337
BpmI CTGGAG 1 cut(s) 215
Bpu10I CCTNAGC 1 cut(s) 507
BpuMI CCSGG 3 cut(s) 199, 251, 879
BsaBI GATNNNNATC 1 cut(s) 710
BsaHI GRCGYC 1 cut(s) 435
BsaI GGTCTC 2 cut(s) 264, 308
BsaWI WCCGGW 4 cut(s) 191, 407, 490, 614
BsaXI ACNNNNNCTCC 2 cut(s) 389, 419
Bsc4I CCNNNNNNNGG 4 cut(s) 198, 256, 427, 702
Bse1I ACTGG 1 cut(s) 924
Bse3DI GCAATG 1 cut(s) 483
Bse8I GATNNNNATC 1 cut(s) 710
BseAI TCCGGA 2 cut(s) 191, 490
BseBI CCWGG 2 cut(s) 293, 1019
BseGI GGATG 2 cut(s) 163, 711
BseJI GATNNNNATC 1 cut(s) 710
BseLI CCNNNNNNNGG 4 cut(s) 198, 256, 427, 702
BseMI GCAATG 1 cut(s) 483
BseNI ACTGG 1 cut(s) 924
BseRI GAGGAG 2 cut(s) 13, 75
BseSI GKGCMC 1 cut(s) 467
BseXI GCAGC 3 cut(s) 663, 861, 1018
Bsh1236I CGCG 1 cut(s) 893
BshFI GGCC 4 cut(s) 254, 290, 695, 863
BsiHKAI GWGCWC 2 cut(s) 467, 603
BsiSI CCGG 7 cut(s) 192, 199, 251, 408, 491, 615, 878
BslFI GGGAC 3 cut(s) 281, 410, 869
BslI CCNNNNNNNGG 4 cut(s) 198, 256, 427, 702
BsmAI GTCTC 3 cut(s) 264, 308, 964
BsmFI GGGAC 3 cut(s) 281, 410, 869
BsmI GAATGC 1 cut(s) 208
BsnI GGCC 4 cut(s) 254, 290, 695, 863
Bso31I GGTCTC 2 cut(s) 264, 308
Bsp1286I GDGCHC 4 cut(s) 15, 467, 603, 772
Bsp13I TCCGGA 2 cut(s) 191, 490
Bsp143I GATC 3 cut(s) 711, 1008, 1135
Bsp19I CCATGG 3 cut(s) 255, 664, 1048
BspACI CCGC 7 cut(s) 214, 246, 500, 883, 893, 896, 923
BspANI GGCC 4 cut(s) 254, 290, 695, 863
BspEI TCCGGA 2 cut(s) 191, 490
BspFNI CGCG 1 cut(s) 893
BspHI TCATGA 1 cut(s) 61
BspLI GGNNCC 3 cut(s) 57, 196, 297
BspPI GGATC 1 cut(s) 719
BspTNI GGTCTC 2 cut(s) 264, 308
BsrDI GCAATG 1 cut(s) 483
BsrI ACTGG 1 cut(s) 924
BssMI GATC 3 cut(s) 711, 1008, 1135
BssNI GRCGYC 1 cut(s) 435
BssT1I CCWWGG 4 cut(s) 255, 664, 696, 1048
Bst2UI CCWGG 2 cut(s) 293, 1019
Bst4CI ACNGT 3 cut(s) 309, 844, 1015
Bst6I CTCTTC 1 cut(s) 175
BstACI GRCGYC 1 cut(s) 435
BstC8I GCNNGC 2 cut(s) 504, 1029
BstDEI CTNAG 2 cut(s) 507, 563
BstDSI CCRYGG 5 cut(s) 255, 426, 646, 664, 1048
BstF5I GGATG 2 cut(s) 163, 711
BstFNI CGCG 1 cut(s) 893
BstH2I RGCGCY 1 cut(s) 737
BstHHI GCGC 1 cut(s) 736
BstKTI GATC 3 cut(s) 714, 1011, 1138
BstMAI GTCTC 3 cut(s) 264, 308, 964
BstMBI GATC 3 cut(s) 711, 1008, 1135
BstMWI GCNNNNNNNGC 5 cut(s) 592, 657, 880, 883, 1059
BstNI CCWGG 2 cut(s) 293, 1019
BstSCI CCNGG 5 cut(s) 197, 249, 291, 877, 1017
BstSLI GKGCMC 1 cut(s) 467
BstUI CGCG 1 cut(s) 893
BstV1I GCAGC 3 cut(s) 663, 861, 1018
BstV2I GAAGAC 1 cut(s) 171
BsuRI GGCC 4 cut(s) 254, 290, 695, 863
BtgI CCRYGG 5 cut(s) 255, 426, 646, 664, 1048
BtgZI GCGATG 1 cut(s) 250
BtsCI GGATG 2 cut(s) 163, 711
BtsI GCAGTG 1 cut(s) 1178
BtsIMutI CAGTG 3 cut(s) 917, 1011, 1178
Cac8I GCNNGC 2 cut(s) 504, 1029
CciI TCATGA 1 cut(s) 61
CfoI GCGC 1 cut(s) 736
Cfr13I GGNCC 4 cut(s) 55, 194, 289, 295
CseI GACGC 1 cut(s) 443
Csp6I GTAC 1 cut(s) 475
CviAII CATG 8 cut(s) 62, 140, 256, 265, 355, 460, 665, 1049
CviQI GTAC 1 cut(s) 475
DdeI CTNAG 2 cut(s) 507, 563
DpnI GATC 3 cut(s) 713, 1010, 1137
DpnII GATC 3 cut(s) 711, 1008, 1135
DraIII CACNNNGTG 2 cut(s) 427, 462
EaeI YGGCCR 2 cut(s) 252, 693
Eam1104I CTCTTC 1 cut(s) 175
EarI CTCTTC 1 cut(s) 175
Eco130I CCWWGG 4 cut(s) 255, 664, 696, 1048
Eco147I AGGCCT 1 cut(s) 863
Eco24I GRGCYC 2 cut(s) 15, 772
Eco31I GGTCTC 2 cut(s) 264, 308
Eco47I GGWCC 3 cut(s) 55, 194, 295
Eco57I CTGAAG 1 cut(s) 296
EcoO109I RGGNCCY 2 cut(s) 55, 295
EcoRII CCWGG 2 cut(s) 291, 1017
EcoT14I CCWWGG 4 cut(s) 255, 664, 696, 1048
EcoT38I GRGCYC 2 cut(s) 15, 772
ErhI CCWWGG 4 cut(s) 255, 664, 696, 1048
FaeI CATG 8 cut(s) 65, 143, 259, 268, 358, 463, 668, 1052
FaqI GGGAC 3 cut(s) 281, 410, 869
FatI CATG 8 cut(s) 61, 139, 255, 264, 354, 459, 664, 1048
FauI CCCGC 1 cut(s) 221
Fnu4HI GCNGC 6 cut(s) 500, 652, 875, 884, 894, 1032
FokI GGATG 2 cut(s) 150, 718
FriOI GRGCYC 2 cut(s) 15, 772
Fsp4HI GCNGC 6 cut(s) 500, 652, 875, 884, 894, 1032
GlaI GCGC 1 cut(s) 735
GluI GCNGC 6 cut(s) 500, 652, 875, 884, 894, 1032
GsuI CTGGAG 1 cut(s) 215
HaeII RGCGCY 1 cut(s) 737
HaeIII GGCC 4 cut(s) 254, 290, 695, 863
HapII CCGG 7 cut(s) 192, 199, 251, 408, 491, 615, 878
HgaI GACGC 1 cut(s) 443
HhaI GCGC 1 cut(s) 736
Hin1I GRCGYC 1 cut(s) 435
Hin1II CATG 8 cut(s) 65, 143, 259, 268, 358, 463, 668, 1052
Hin6I GCGC 1 cut(s) 734
HinP1I GCGC 1 cut(s) 734
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HindIII AAGCTT 1 cut(s) 1148
HinfI GANTC 6 cut(s) 618, 628, 717, 809, 1154, 1198
HpaII CCGG 7 cut(s) 192, 199, 251, 408, 491, 615, 878
HphI GGTGA 4 cut(s) 85, 448, 626, 760
Hpy166II GTNNAC 3 cut(s) 433, 465, 1081
Hpy188I TCNGA 6 cut(s) 313, 332, 415, 676, 716, 1069
Hpy188III TCNNGA 4 cut(s) 62, 192, 491, 610
Hpy8I GTNNAC 3 cut(s) 433, 465, 1081
HpyAV CCTTC 1 cut(s) 874
HpyCH4III ACNGT 3 cut(s) 309, 844, 1015
HpyCH4V TGCA 6 cut(s) 240, 465, 595, 756, 1000, 1126
HpyF10VI GCNNNNNNNGC 5 cut(s) 592, 657, 880, 883, 1059
HpyF3I CTNAG 2 cut(s) 507, 563
Hsp92I GRCGYC 1 cut(s) 435
Hsp92II CATG 8 cut(s) 65, 143, 259, 268, 358, 463, 668, 1052
HspAI GCGC 1 cut(s) 734
Kpn2I TCCGGA 2 cut(s) 191, 490
Kzo9I GATC 3 cut(s) 711, 1008, 1135
LmnI GCTCC 2 cut(s) 326, 493
Lsp1109I GCAGC 3 cut(s) 663, 861, 1018
LweI GCATC 1 cut(s) 227
MaeIII GTNAC 3 cut(s) 345, 454, 835
MalI GATC 3 cut(s) 713, 1010, 1137
MboI GATC 3 cut(s) 711, 1008, 1135
MboII GAAGA 4 cut(s) 162, 171, 180, 1183
MfeI CAATTG 1 cut(s) 102
MhlI GDGCHC 4 cut(s) 15, 467, 603, 772
MlsI TGGCCA 1 cut(s) 695
MluCI AATT 3 cut(s) 102, 577, 981
MluNI TGGCCA 1 cut(s) 695
MlyI GAGTC 2 cut(s) 637, 711
MmeI TCCRAC 1 cut(s) 1173
Mox20I TGGCCA 1 cut(s) 695
MroI TCCGGA 2 cut(s) 191, 490
MroXI GAANNNNTTC 1 cut(s) 1202
MscI TGGCCA 1 cut(s) 695
MslI CAYNNNNRTG 1 cut(s) 138
Msp20I TGGCCA 1 cut(s) 695
MspA1I CMGCKG 1 cut(s) 502
MspI CCGG 7 cut(s) 192, 199, 251, 408, 491, 615, 878
MspR9I CCNGG 5 cut(s) 199, 251, 293, 879, 1019
MunI CAATTG 1 cut(s) 102
Mva1269I GAATGC 1 cut(s) 208
MvaI CCWGG 2 cut(s) 293, 1019
MvnI CGCG 1 cut(s) 893
MwoI GCNNNNNNNGC 5 cut(s) 592, 657, 880, 883, 1059
NciI CCSGG 3 cut(s) 199, 251, 879
NcoI CCATGG 3 cut(s) 255, 664, 1048
NdeII GATC 3 cut(s) 711, 1008, 1135
NlaIII CATG 8 cut(s) 65, 143, 259, 268, 358, 463, 668, 1052
NlaIV GGNNCC 3 cut(s) 57, 196, 297
NmuCI GTSAC 1 cut(s) 454
PagI TCATGA 1 cut(s) 61
PceI AGGCCT 1 cut(s) 863
PctI GAATGC 1 cut(s) 208
PdmI GAANNNNTTC 1 cut(s) 1202
PfeI GAWTC 4 cut(s) 618, 809, 1154, 1198
PflMI CCANNNNNTGG 1 cut(s) 427
PfoI TCCNGGA 1 cut(s) 1017
PkrI GCNGC 6 cut(s) 501, 653, 876, 885, 895, 1033
PleI GAGTC 2 cut(s) 636, 711
PpsI GAGTC 2 cut(s) 636, 711
PpuMI RGGWCCY 2 cut(s) 55, 295
Psp5II RGGWCCY 2 cut(s) 55, 295
Psp6I CCWGG 2 cut(s) 291, 1017
PspGI CCWGG 2 cut(s) 291, 1017
PspN4I GGNNCC 3 cut(s) 57, 196, 297
PspPI GGNCC 4 cut(s) 55, 194, 289, 295
PspPPI RGGWCCY 2 cut(s) 55, 295
RsaI GTAC 1 cut(s) 476
RsaNI GTAC 1 cut(s) 475
RseI CAYNNNNRTG 1 cut(s) 138
SatI GCNGC 6 cut(s) 500, 652, 875, 884, 894, 1032
Sau3AI GATC 3 cut(s) 711, 1008, 1135
Sau96I GGNCC 4 cut(s) 55, 194, 289, 295
SchI GAGTC 2 cut(s) 637, 711
ScrFI CCNGG 5 cut(s) 199, 251, 293, 879, 1019
SduI GDGCHC 4 cut(s) 15, 467, 603, 772
SetI ASST 7 cut(s) 276, 297, 323, 340, 513, 1089, 1152
SfaNI GCATC 1 cut(s) 227
SinI GGWCC 3 cut(s) 55, 194, 295
SmiMI CAYNNNNRTG 1 cut(s) 138
Sse9I AATT 3 cut(s) 102, 577, 981
SseBI AGGCCT 1 cut(s) 863
SsiI CCGC 7 cut(s) 214, 246, 500, 883, 893, 896, 923
StuI AGGCCT 1 cut(s) 863
StyD4I CCNGG 5 cut(s) 197, 249, 291, 877, 1017
StyI CCWWGG 4 cut(s) 255, 664, 696, 1048
TaaI ACNGT 3 cut(s) 309, 844, 1015
TaqI TCGA 1 cut(s) 914
TasI AATT 3 cut(s) 102, 577, 981
TauI GCSGC 3 cut(s) 502, 886, 896
TfiI GAWTC 4 cut(s) 618, 809, 1154, 1198
TscAI CASTG 3 cut(s) 924, 1018, 1185
TseFI GTSAC 1 cut(s) 454
TseI GCWGC 3 cut(s) 651, 874, 1031
Tsp45I GTSAC 1 cut(s) 454
TspDTI ATGAA 3 cut(s) 159, 162, 1045
TspRI CASTG 3 cut(s) 924, 1018, 1185
Van91I CCANNNNNTGG 1 cut(s) 427
VneI GTGCAC 1 cut(s) 463
VpaK11BI GGWCC 3 cut(s) 55, 194, 295
XmnI GAANNNNTTC 1 cut(s) 1202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.