Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003151.1

Orthogroup ID

OG0006185

Physical Location & Seq

Genomic Coordinates Reverse (-)

97705 .. 98145

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003151.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgagtcatcaccaccaccaccacggcagcaaaagccaccatggattttcggactacattgttgatgtggccaaggggaggatgaggatcagactcaaggtgggtctggcgcttggtgtggtggtgatgtgcattggcattggggctctggttttgtgttttttggaggatttggattgggttgattccatttatttgtctgttatgtcggttacaactgttgggtatggggacaaggccttcaagtcgctgccggggcggcttttcgcggcggtttggcttctgttttcgacactggcggtggcgagagcctttttgtatttggcagaggcgagggtggataagagacacaggaaaattgtcaagtgggtattgcatagggagatcactgtccaggatttacttgctgctgacatcaataaccatggcttcatcaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009705 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022840 GO:0022841 GO:0022842 GO:0022857 GO:0022890 GO:0030001 GO:0030322 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ion_trans_2

Protein Analysis

146

Amino Acids

16.44

Weight (kDa)

9.59

Isoelectric Point (pI)

9.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01840
fragaria_vesca	FvH4_1g26310 FvH4_1g26310
malus_domestica	MD09G1289500.v1.1 MD17G1284200.v1.1
prunus_persica	Prupe.3G003200_v2.0.a1 Prupe.3G003200_v2.0.a1 Prupe.5G044500_v2.0.a1
pyrus_communis	pycom09g19750 pycom14g08130 pycom17g28020
rosa_chinensis	RchiOBHm_Chr1g0333551 RchiOBHm_Chr3g0485981
rosa_laevigata	RLG00000023117 RLG00000035326
rosa_multiflora	Rmu_sc0003151.1_g000035 Rmu_sc0004032.1_g000015 Rmu_sc0009687.1_g000001 Rmu_sc0041532.1_g000001
rosa_roxburghii	Rroxscaffold_6G00396140
rosa_rugosa	Rorug03G0223100
rosa_samantha	Rh3AG272700 Rh3BG307400 Rh3CG306000 Rh3DG302300
rosa_wichuraiana	Rw3G024180 Rw6G027690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	269
AciI	CCGC	4 cut(s)	259, 269, 272, 299
AclWI	GGATC	1 cut(s)	95
AcoI	YGGCCR	1 cut(s)	69
AfiI	CCNNNNNNNGG	1 cut(s)	78
AgsI	TTSAA	1 cut(s)	244
AjnI	CCWGG	1 cut(s)	393
Alw26I	GTCTC	1 cut(s)	340
AlwI	GGATC	1 cut(s)	95
AoxI	GGCC	2 cut(s)	69, 237
ApeKI	GCWGC	3 cut(s)	27, 250, 407
AspLEI	GCGC	1 cut(s)	112
AsuC2I	CCSGG	1 cut(s)	255
AsuHPI	GGTGA	1 cut(s)	136
BalI	TGGCCA	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	148
BbvI	GCAGC	3 cut(s)	39, 237, 394
BceAI	ACGGC	1 cut(s)	40
BciT130I	CCWGG	1 cut(s)	395
BcnI	CCSGG	1 cut(s)	255
BcoDI	GTCTC	1 cut(s)	340
BfoI	RGCGCY	1 cut(s)	113
BglI	GCCNNNNNGGC	1 cut(s)	259
BisI	GCNGC	5 cut(s)	28, 251, 260, 270, 408
BlsI	GCNGC	5 cut(s)	29, 252, 261, 271, 409
Bme1390I	CCNGG	2 cut(s)	255, 395
BmrFI	CCNGG	2 cut(s)	255, 395
BpuEI	CTTGAG	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	255
BsaBI	GATNNNNATC	1 cut(s)	86
BsaJI	CCNNGG	5 cut(s)	22, 40, 72, 254, 424
Bsc4I	CCNNNNNNNGG	1 cut(s)	78
Bse1I	ACTGG	1 cut(s)	300
Bse8I	GATNNNNATC	1 cut(s)	86
BseBI	CCWGG	1 cut(s)	395
BseDI	CCNNGG	5 cut(s)	22, 40, 72, 254, 424
BseGI	GGATG	1 cut(s)	87
BseJI	GATNNNNATC	1 cut(s)	86
BseLI	CCNNNNNNNGG	1 cut(s)	78
BseNI	ACTGG	1 cut(s)	300
BseXI	GCAGC	3 cut(s)	39, 237, 394
Bsh1236I	CGCG	1 cut(s)	269
BshFI	GGCC	2 cut(s)	71, 239
BsiSI	CCGG	1 cut(s)	254
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	1 cut(s)	78
BsmAI	GTCTC	1 cut(s)	340
BsmFI	GGGAC	1 cut(s)	245
BsnI	GGCC	2 cut(s)	71, 239
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	2 cut(s)	87, 384
Bsp19I	CCATGG	2 cut(s)	40, 424
BspACI	CCGC	4 cut(s)	259, 269, 272, 299
BspANI	GGCC	2 cut(s)	71, 239
BspFNI	CGCG	1 cut(s)	269
BspPI	GGATC	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	300
BssECI	CCNNGG	5 cut(s)	22, 40, 72, 254, 424
BssMI	GATC	2 cut(s)	87, 384
BssT1I	CCWWGG	3 cut(s)	40, 72, 424
Bst2UI	CCWGG	1 cut(s)	395
Bst4CI	ACNGT	2 cut(s)	220, 391
BstDSI	CCRYGG	3 cut(s)	22, 40, 424
BstF5I	GGATG	1 cut(s)	87
BstFNI	CGCG	1 cut(s)	269
BstH2I	RGCGCY	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	2 cut(s)	90, 387
BstMAI	GTCTC	1 cut(s)	340
BstMBI	GATC	2 cut(s)	87, 384
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 256, 259
BstNI	CCWGG	1 cut(s)	395
BstSCI	CCNGG	2 cut(s)	253, 393
BstUI	CGCG	1 cut(s)	269
BstV1I	GCAGC	3 cut(s)	39, 237, 394
BsuRI	GGCC	2 cut(s)	71, 239
BtgI	CCRYGG	3 cut(s)	22, 40, 424
BtsCI	GGATG	1 cut(s)	87
BtsIMutI	CAGTG	2 cut(s)	293, 387
CfoI	GCGC	1 cut(s)	112
CviAII	CATG	2 cut(s)	41, 425
CviJI	RGCY	8 cut(s)	36, 71, 146, 239, 262, 280, 311, 429
CviKI_1	RGCY	8 cut(s)	36, 71, 146, 239, 262, 280, 311, 429
DpnI	GATC	2 cut(s)	89, 386
DpnII	GATC	2 cut(s)	87, 384
EaeI	YGGCCR	1 cut(s)	69
Eco130I	CCWWGG	3 cut(s)	40, 72, 424
Eco147I	AGGCCT	1 cut(s)	239
Eco24I	GRGCYC	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	393
EcoT14I	CCWWGG	3 cut(s)	40, 72, 424
EcoT38I	GRGCYC	1 cut(s)	148
ErhI	CCWWGG	3 cut(s)	40, 72, 424
FaeI	CATG	2 cut(s)	44, 428
FaiI	YATR	5 cut(s)	42, 206, 228, 378, 426
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	2 cut(s)	40, 424
Fnu4HI	GCNGC	5 cut(s)	28, 251, 260, 270, 408
FokI	GGATG	1 cut(s)	94
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	5 cut(s)	28, 251, 260, 270, 408
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	5 cut(s)	28, 251, 260, 270, 408
HaeII	RGCGCY	1 cut(s)	113
HaeIII	GGCC	2 cut(s)	71, 239
HapII	CCGG	1 cut(s)	254
HhaI	GCGC	1 cut(s)	112
Hin1II	CATG	2 cut(s)	44, 428
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HinfI	GANTC	3 cut(s)	4, 93, 185
HpaII	CCGG	1 cut(s)	254
HphI	GGTGA	1 cut(s)	136
Hpy188I	TCNGA	2 cut(s)	52, 92
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	2 cut(s)	220, 391
HpyCH4V	TGCA	2 cut(s)	132, 376
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 256, 259
Hsp92II	CATG	2 cut(s)	44, 428
HspAI	GCGC	1 cut(s)	110
Kzo9I	GATC	2 cut(s)	87, 384
LpnPI	CCDG	8 cut(s)	92, 134, 267, 281, 337, 380, 407, 421
Lsp1109I	GCAGC	3 cut(s)	39, 237, 394
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	2 cut(s)	89, 386
MboI	GATC	2 cut(s)	87, 384
MhlI	GDGCHC	1 cut(s)	148
MlsI	TGGCCA	1 cut(s)	71
MluCI	AATT	1 cut(s)	357
MluNI	TGGCCA	1 cut(s)	71
MlyI	GAGTC	2 cut(s)	13, 87
MnlI	CCTC	5 cut(s)	72, 78, 160, 322, 327
Mox20I	TGGCCA	1 cut(s)	71
MscI	TGGCCA	1 cut(s)	71
Msp20I	TGGCCA	1 cut(s)	71
MspI	CCGG	1 cut(s)	254
MspR9I	CCNGG	2 cut(s)	255, 395
MvaI	CCWGG	1 cut(s)	395
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	3 cut(s)	33, 256, 259
NciI	CCSGG	1 cut(s)	255
NcoI	CCATGG	2 cut(s)	40, 424
NdeII	GATC	2 cut(s)	87, 384
NlaIII	CATG	2 cut(s)	44, 428
PceI	AGGCCT	1 cut(s)	239
PfeI	GAWTC	1 cut(s)	185
PfoI	TCCNGGA	1 cut(s)	393
PkrI	GCNGC	5 cut(s)	29, 252, 261, 271, 409
PleI	GAGTC	2 cut(s)	12, 87
PpsI	GAGTC	2 cut(s)	12, 87
Psp6I	CCWGG	1 cut(s)	393
PspGI	CCWGG	1 cut(s)	393
SatI	GCNGC	5 cut(s)	28, 251, 260, 270, 408
Sau3AI	GATC	2 cut(s)	87, 384
SchI	GAGTC	2 cut(s)	13, 87
ScrFI	CCNGG	2 cut(s)	255, 395
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	2 cut(s)	102, 440
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	1 cut(s)	357
SseBI	AGGCCT	1 cut(s)	239
SsiI	CCGC	4 cut(s)	259, 269, 272, 299
StuI	AGGCCT	1 cut(s)	239
StyD4I	CCNGG	2 cut(s)	253, 393
StyI	CCWWGG	3 cut(s)	40, 72, 424
TaaI	ACNGT	2 cut(s)	220, 391
TaqI	TCGA	1 cut(s)	290
TasI	AATT	1 cut(s)	357
TauI	GCSGC	2 cut(s)	262, 272
TfiI	GAWTC	1 cut(s)	185
TscAI	CASTG	2 cut(s)	300, 394
TseI	GCWGC	3 cut(s)	27, 250, 407
TspDTI	ATGAA	1 cut(s)	421
TspRI	CASTG	2 cut(s)	300, 394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.