Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0006185

Physical Location & Seq

Genomic Coordinates Reverse (-)

51606969 .. 51609877

Gene Structure 2909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G027690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGCTGTCATGAGTGACCTGAAGCCAAAGACGGCTCAGGTCCCCAAGCCACAGTCCGAGACCAGCTCCATCATCAGACAAGTTGTGTTGTTACTTGTCATGTATCTTTCTCTAGGAGTTGTAATATACTCTTTCAACGGGGACAAGTTCTCCGATATGGAAACCCACTCCGTGGTTGACGCCCTCTACTTTTGTATAGTCACTATGTGCACGATTGGGTTCAGCGACATTGCTCCAGAAACGCCGCTGGCTAAGAAGATAAGGAACAATAAAGAAAAGCACAAATGGGCTGTTCAGCTCATGGACGAACTACTAAAAAGTGCTTCCATGTATTCATATGAATATGAAGACAGTGGTATGAACCCATATGCAGCACCAATATCGTCCGATGAAACAAGGCCGTACAACATTTCCCATAGTGGCGTTCACATAGCCCATGAAAGCATTGAAGGAGAACTAATGACTCCTAGTACGTACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009705 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022840 GO:0022841 GO:0022842 GO:0022857 GO:0022890 GO:0030001 GO:0030322 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ion_trans_2

Protein Analysis

160

Amino Acids

17.96

Weight (kDa)

5.29

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans_2	PF07885	31 - 85	1.5e-11	Ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01840
fragaria_vesca	FvH4_1g26310 FvH4_1g26310
malus_domestica	MD09G1289500.v1.1 MD17G1284200.v1.1
prunus_persica	Prupe.3G003200_v2.0.a1 Prupe.3G003200_v2.0.a1 Prupe.5G044500_v2.0.a1
pyrus_communis	pycom09g19750 pycom14g08130 pycom17g28020
rosa_chinensis	RchiOBHm_Chr1g0333551 RchiOBHm_Chr3g0485981
rosa_laevigata	RLG00000023117 RLG00000035326
rosa_multiflora	Rmu_sc0003151.1_g000035 Rmu_sc0004032.1_g000015 Rmu_sc0009687.1_g000001 Rmu_sc0041532.1_g000001
rosa_roxburghii	Rroxscaffold_6G00396140
rosa_rugosa	Rorug03G0223100
rosa_samantha	Rh3AG272700 Rh3BG307400 Rh3CG306000 Rh3DG302300
rosa_wichuraiana	Rw3G024180 Rw6G027690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	172
AciI	CCGC	1 cut(s)	245
AcuI	CTGAAG	1 cut(s)	41
AcyI	GRCGYC	1 cut(s)	180
AdeI	CACNNNGTG	2 cut(s)	172, 207
AfaI	GTAC	3 cut(s)	404, 472, 476
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	2 cut(s)	136, 449
AluBI	AGCT	2 cut(s)	66, 298
AluI	AGCT	2 cut(s)	66, 298
Alw21I	GWGCWC	1 cut(s)	212
Alw26I	GTCTC	1 cut(s)	53
Alw44I	GTGCAC	1 cut(s)	208
AoxI	GGCC	1 cut(s)	398
ApaLI	GTGCAC	1 cut(s)	208
ApeKI	GCWGC	1 cut(s)	371
AspS9I	GGNCC	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	40
BaeGI	GKGCMC	1 cut(s)	212
BbsI	GAAGAC	1 cut(s)	354
Bbv12I	GWGCWC	1 cut(s)	212
BbvI	GCAGC	1 cut(s)	383
BccI	CCATC	1 cut(s)	77
BceAI	ACGGC	2 cut(s)	48, 385
BcgI	CGANNNNNNTGC	2 cut(s)	363, 397
BcoDI	GTCTC	1 cut(s)	53
BfaI	CTAG	2 cut(s)	113, 468
BisI	GCNGC	2 cut(s)	245, 372
BlsI	GCNGC	2 cut(s)	246, 373
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	1 cut(s)	42
BpiI	GAAGAC	1 cut(s)	354
BplI	GAGNNNNNCTC	2 cut(s)	50, 82
BpmI	CTGGAG	1 cut(s)	219
Bpu10I	CCTNAGC	1 cut(s)	36
BsaAI	YACGTR	1 cut(s)	474
BsaHI	GRCGYC	1 cut(s)	180
BsaI	GGTCTC	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	171
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse3DI	GCAATG	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	171
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	50
BseSI	GKGCMC	1 cut(s)	212
BseXI	GCAGC	1 cut(s)	383
BshFI	GGCC	1 cut(s)	400
BsiHKAI	GWGCWC	1 cut(s)	212
BslFI	GGGAC	2 cut(s)	26, 155
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	1 cut(s)	53
BsmFI	GGGAC	2 cut(s)	26, 155
BsnI	GGCC	1 cut(s)	400
Bso31I	GGTCTC	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	212
BspACI	CCGC	1 cut(s)	245
BspANI	GGCC	1 cut(s)	400
BspCNI	CTCAG	1 cut(s)	49
BspHI	TCATGA	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	42
BspTNI	GGTCTC	1 cut(s)	53
BsrDI	GCAATG	1 cut(s)	228
BssECI	CCNNGG	1 cut(s)	171
BssNI	GRCGYC	1 cut(s)	180
Bst4CI	ACNGT	2 cut(s)	54, 353
BstACI	GRCGYC	1 cut(s)	180
BstBAI	YACGTR	1 cut(s)	474
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	2 cut(s)	36, 252
BstDSI	CCRYGG	1 cut(s)	171
BstMAI	GTCTC	1 cut(s)	53
BstSLI	GKGCMC	1 cut(s)	212
BstSNI	TACGTA	1 cut(s)	474
BstV1I	GCAGC	1 cut(s)	383
BstV2I	GAAGAC	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	400
BtgI	CCRYGG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	358
Cac8I	GCNNGC	1 cut(s)	249
CciI	TCATGA	1 cut(s)	9
Cfr13I	GGNCC	1 cut(s)	40
CseI	GACGC	1 cut(s)	188
Csp6I	GTAC	3 cut(s)	403, 471, 475
CviAII	CATG	5 cut(s)	10, 100, 301, 328, 437
CviQI	GTAC	3 cut(s)	403, 471, 475
DdeI	CTNAG	2 cut(s)	36, 252
DraIII	CACNNNGTG	2 cut(s)	172, 207
Eco105I	TACGTA	1 cut(s)	474
Eco31I	GGTCTC	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	41
EcoO109I	RGGNCCY	1 cut(s)	40
FaeI	CATG	5 cut(s)	13, 103, 304, 331, 440
FaqI	GGGAC	2 cut(s)	26, 155
FatI	CATG	5 cut(s)	9, 99, 300, 327, 436
FauNDI	CATATG	2 cut(s)	337, 367
Fnu4HI	GCNGC	2 cut(s)	245, 372
Fsp4HI	GCNGC	2 cut(s)	245, 372
FspBI	CTAG	2 cut(s)	113, 468
GluI	GCNGC	2 cut(s)	245, 372
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	400
HgaI	GACGC	1 cut(s)	188
Hin1I	GRCGYC	1 cut(s)	180
Hin1II	CATG	5 cut(s)	13, 103, 304, 331, 440
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	1 cut(s)	463
Hpy166II	GTNNAC	3 cut(s)	178, 210, 427
Hpy188I	TCNGA	4 cut(s)	58, 77, 154, 388
Hpy188III	TCNNGA	2 cut(s)	10, 236
Hpy8I	GTNNAC	3 cut(s)	178, 210, 427
HpyAV	CCTTC	1 cut(s)	443
HpyCH4III	ACNGT	2 cut(s)	54, 353
HpyCH4IV	ACGT	1 cut(s)	473
HpyCH4V	TGCA	2 cut(s)	210, 371
HpyF3I	CTNAG	2 cut(s)	36, 252
HpySE526I	ACGT	1 cut(s)	473
Hsp92I	GRCGYC	1 cut(s)	180
Hsp92II	CATG	5 cut(s)	13, 103, 304, 331, 440
LmnI	GCTCC	2 cut(s)	71, 238
LpnPI	CCDG	5 cut(s)	23, 32, 76, 233, 249
Lsp1109I	GCAGC	1 cut(s)	383
MaeI	CTAG	2 cut(s)	113, 468
MaeII	ACGT	1 cut(s)	473
MaeIII	GTNAC	3 cut(s)	14, 90, 199
MboII	GAAGA	2 cut(s)	268, 359
MhlI	GDGCHC	1 cut(s)	212
MlyI	GAGTC	1 cut(s)	457
MnlI	CCTC	1 cut(s)	194
MspA1I	CMGCKG	1 cut(s)	247
NdeI	CATATG	2 cut(s)	337, 367
NlaIII	CATG	5 cut(s)	13, 103, 304, 331, 440
NlaIV	GGNNCC	1 cut(s)	42
NmuCI	GTSAC	2 cut(s)	14, 199
PagI	TCATGA	1 cut(s)	9
PflMI	CCANNNNNTGG	1 cut(s)	172
PkrI	GCNGC	2 cut(s)	246, 373
PleI	GAGTC	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	457
Ppu21I	YACGTR	1 cut(s)	474
PpuMI	RGGWCCY	1 cut(s)	40
Psp5II	RGGWCCY	1 cut(s)	40
PspN4I	GGNNCC	1 cut(s)	42
PspPI	GGNCC	1 cut(s)	40
PspPPI	RGGWCCY	1 cut(s)	40
RsaI	GTAC	3 cut(s)	404, 472, 476
RsaNI	GTAC	3 cut(s)	403, 471, 475
SatI	GCNGC	2 cut(s)	245, 372
Sau96I	GGNCC	1 cut(s)	40
SchI	GAGTC	1 cut(s)	457
SduI	GDGCHC	1 cut(s)	212
SetI	ASST	5 cut(s)	21, 42, 68, 300, 476
SinI	GGWCC	1 cut(s)	40
SnaBI	TACGTA	1 cut(s)	474
SsiI	CCGC	1 cut(s)	245
SspMI	CTAG	2 cut(s)	113, 468
TaaI	ACNGT	2 cut(s)	54, 353
TaiI	ACGT	1 cut(s)	476
TauI	GCSGC	1 cut(s)	247
TscAI	CASTG	1 cut(s)	358
TseFI	GTSAC	2 cut(s)	14, 199
TseI	GCWGC	1 cut(s)	371
Tsp45I	GTSAC	2 cut(s)	14, 199
TspDTI	ATGAA	6 cut(s)	324, 354, 360, 374, 405, 453
TspGWI	ACGGA	1 cut(s)	160
TspRI	CASTG	1 cut(s)	358
Van91I	CCANNNNNTGG	1 cut(s)	172
VneI	GTGCAC	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	40
XspI	CTAG	2 cut(s)	113, 468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.