RchiOBHm_Chr1g0333551

Potassium channel

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
25689433 .. 25689774
342 bp
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UTR
Exon/CDS
Intron
PRQ56235

Sequence Viewer

Length: 342 bp
ATGGCTGTCATGCGTGACCTGAAGCCAAAGACGGCCCAAGTTCCCAAGCCGCAGTCCCAGACCAGCTCCATCATCAAACAAGTTGTGTTGTTACTTGTCATGTATCTTGCTCTCAATGTTGTAATATACTCTTTCAACAAGGACAAGTTCTCCCGTATGGAAACCCACCCCGTGGTTGACGCCCTCTACTTTTGTATAGTCACTATGTGCACGATTGGTTACGGCGACATTGCTCCGGAAACGCCGCTGGCTAAGGTGTTTTCGTGTGTGTTTGTGTTGGTGGGGTTTGGGTTTATTGACATCTTGCTCAGTGGGGTGGTCAATTATGTGCTGGACTTGTAA

Protein Analysis

113

Amino Acids

12.55

Weight (kDa)

7.68

Isoelectric Point (pI)

29.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 25 - 107 4.3e-07 Ion transport protein
Ion_trans_2 PF07885 31 - 110 5.7e-18 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 172
AccIII TCCGGA 1 cut(s) 235
AciI CCGC 2 cut(s) 50, 245
AcuI CTGAAG 1 cut(s) 41
AcyI GRCGYC 1 cut(s) 180
AdeI CACNNNGTG 2 cut(s) 172, 207
AfiI CCNNNNNNNGG 1 cut(s) 172
AgsI TTSAA 1 cut(s) 136
AluBI AGCT 1 cut(s) 66
AluI AGCT 1 cut(s) 66
Alw21I GWGCWC 1 cut(s) 212
Alw44I GTGCAC 1 cut(s) 208
Aor13HI TCCGGA 1 cut(s) 235
AoxI GGCC 1 cut(s) 33
ApaLI GTGCAC 1 cut(s) 208
AspS9I GGNCC 1 cut(s) 34
BaeGI GKGCMC 1 cut(s) 212
Bbv12I GWGCWC 1 cut(s) 212
BccI CCATC 1 cut(s) 77
BceAI ACGGC 2 cut(s) 48, 238
BisI GCNGC 2 cut(s) 50, 245
BlsI GCNGC 2 cut(s) 51, 246
BmgT120I GGNCC 1 cut(s) 34
Bpu10I CCTNAGC 1 cut(s) 252
BsaHI GRCGYC 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 171
BsaWI WCCGGW 1 cut(s) 235
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 1 cut(s) 172
Bse3DI GCAATG 1 cut(s) 228
BseAI TCCGGA 1 cut(s) 235
BseDI CCNNGG 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 172
BseMI GCAATG 1 cut(s) 228
BseMII CTCAG 1 cut(s) 322
BseSI GKGCMC 1 cut(s) 212
BshFI GGCC 1 cut(s) 35
BsiHKAI GWGCWC 1 cut(s) 212
BsiSI CCGG 1 cut(s) 236
BslFI GGGAC 1 cut(s) 40
BslI CCNNNNNNNGG 1 cut(s) 172
BsmFI GGGAC 1 cut(s) 40
BsnI GGCC 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 212
Bsp13I TCCGGA 1 cut(s) 235
BspACI CCGC 2 cut(s) 50, 245
BspANI GGCC 1 cut(s) 35
BspCNI CTCAG 1 cut(s) 321
BspEI TCCGGA 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 228
BssECI CCNNGG 1 cut(s) 171
BssNI GRCGYC 1 cut(s) 180
BstACI GRCGYC 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 249
BstDEI CTNAG 2 cut(s) 252, 308
BstDSI CCRYGG 1 cut(s) 171
BstSLI GKGCMC 1 cut(s) 212
BsuRI GGCC 1 cut(s) 35
BtgI CCRYGG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 316
Cac8I GCNNGC 1 cut(s) 249
Cfr13I GGNCC 1 cut(s) 34
CseI GACGC 1 cut(s) 188
CviAII CATG 2 cut(s) 10, 100
CviJI RGCY 6 cut(s) 5, 25, 35, 49, 66, 251
CviKI_1 RGCY 6 cut(s) 5, 25, 35, 49, 66, 251
DdeI CTNAG 2 cut(s) 252, 308
DraIII CACNNNGTG 2 cut(s) 172, 207
Eco57I CTGAAG 1 cut(s) 41
FaeI CATG 2 cut(s) 13, 103
FaiI YATR 7 cut(s) 11, 101, 127, 158, 197, 206, 327
FaqI GGGAC 1 cut(s) 40
FatI CATG 2 cut(s) 9, 99
Fnu4HI GCNGC 2 cut(s) 50, 245
Fsp4HI GCNGC 2 cut(s) 50, 245
GluI GCNGC 2 cut(s) 50, 245
HaeIII GGCC 1 cut(s) 35
HapII CCGG 1 cut(s) 236
HgaI GACGC 1 cut(s) 188
Hin1I GRCGYC 1 cut(s) 180
Hin1II CATG 2 cut(s) 13, 103
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HpaII CCGG 1 cut(s) 236
Hpy166II GTNNAC 2 cut(s) 178, 210
Hpy188III TCNNGA 1 cut(s) 236
Hpy8I GTNNAC 2 cut(s) 178, 210
HpyCH4V TGCA 1 cut(s) 210
HpyF3I CTNAG 2 cut(s) 252, 308
Hsp92I GRCGYC 1 cut(s) 180
Hsp92II CATG 2 cut(s) 13, 103
Kpn2I TCCGGA 1 cut(s) 235
LmnI GCTCC 2 cut(s) 71, 238
LpnPI CCDG 6 cut(s) 32, 71, 76, 233, 249, 317
MaeIII GTNAC 4 cut(s) 14, 90, 199, 218
MhlI GDGCHC 1 cut(s) 212
MluCI AATT 1 cut(s) 322
MnlI CCTC 1 cut(s) 194
MroI TCCGGA 1 cut(s) 235
MspA1I CMGCKG 1 cut(s) 247
MspI CCGG 1 cut(s) 236
NlaIII CATG 2 cut(s) 13, 103
NmuCI GTSAC 2 cut(s) 14, 199
PflMI CCANNNNNTGG 1 cut(s) 172
PkrI GCNGC 2 cut(s) 51, 246
PspPI GGNCC 1 cut(s) 34
SatI GCNGC 2 cut(s) 50, 245
Sau96I GGNCC 1 cut(s) 34
SduI GDGCHC 1 cut(s) 212
SetI ASST 3 cut(s) 21, 68, 258
Sse9I AATT 1 cut(s) 322
SsiI CCGC 2 cut(s) 50, 245
TasI AATT 1 cut(s) 322
TauI GCSGC 2 cut(s) 52, 247
TscAI CASTG 1 cut(s) 316
TseFI GTSAC 2 cut(s) 14, 199
Tsp45I GTSAC 2 cut(s) 14, 199
TspRI CASTG 1 cut(s) 316
Van91I CCANNNNNTGG 1 cut(s) 172
VneI GTGCAC 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.