Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041532.1

Orthogroup ID

OG0006185

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 656

Gene Structure 655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041532.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 655 bp

atggagaatgagccctttctctcctccccacccccacttgaacccatcattgaggaccctcatgatttctctttcaatctccctcctcccctcaccgacccaattgtgcttctcttacaagaacccccacaccaccaacatgatgaaatacaccaagacccacatccctcttcatcgtcttcctcatcttccggaccccggattaatgctccgacccgcaaacccaccattctccagcgatgcaagaccgccccggccatggctgtcatgcgagacctgaagccaaagacggcgcaggtccccaagccacagtccgagaccagctccatcatcagacaagctgtgttgttacttgtcatgtatctctctctcggtgttgtaatatactctttcaacagggacaagttctccggttcggaaacccaccccgtggttgacgccctctacttttgtatagtcactatgtgcacgattgggtacggcgacattgctccggaaacgccgctggctaaggtgttttcgtgtgtgtttgtgttggtggggtttgggtttattgacatcttgcttagtggggtggtcaattatgtgctggacttgcaagagcacataatcttgaccggaatccaaatgagtcatcaccaccaccaccacggca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009705 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022840 GO:0022841 GO:0022842 GO:0022857 GO:0022890 GO:0030001 GO:0030322 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ion_trans_2

Protein Analysis

218

Amino Acids

24.12

Weight (kDa)

5.91

Isoelectric Point (pI)

55.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01840
fragaria_vesca	FvH4_1g26310 FvH4_1g26310
malus_domestica	MD09G1289500.v1.1 MD17G1284200.v1.1
prunus_persica	Prupe.3G003200_v2.0.a1 Prupe.3G003200_v2.0.a1 Prupe.5G044500_v2.0.a1
pyrus_communis	pycom09g19750 pycom14g08130 pycom17g28020
rosa_chinensis	RchiOBHm_Chr1g0333551 RchiOBHm_Chr3g0485981
rosa_laevigata	RLG00000023117 RLG00000035326
rosa_multiflora	Rmu_sc0003151.1_g000035 Rmu_sc0004032.1_g000015 Rmu_sc0009687.1_g000001 Rmu_sc0041532.1_g000001
rosa_roxburghii	Rroxscaffold_6G00396140
rosa_rugosa	Rorug03G0223100
rosa_samantha	Rh3AG272700 Rh3BG307400 Rh3CG306000 Rh3DG302300
rosa_wichuraiana	Rw3G024180 Rw6G027690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	286
AccB7I	CCANNNNNTGG	1 cut(s)	430
AccIII	TCCGGA	2 cut(s)	191, 493
AciI	CCGC	3 cut(s)	217, 249, 503
AcoI	YGGCCR	1 cut(s)	255
AcuI	CTGAAG	1 cut(s)	299
AcyI	GRCGYC	1 cut(s)	438
AdeI	CACNNNGTG	2 cut(s)	430, 465
AfaI	GTAC	1 cut(s)	479
AfiI	CCNNNNNNNGG	3 cut(s)	198, 259, 430
AgsI	TTSAA	3 cut(s)	41, 76, 394
AluBI	AGCT	2 cut(s)	324, 341
AluI	AGCT	2 cut(s)	324, 341
Alw21I	GWGCWC	2 cut(s)	470, 606
Alw26I	GTCTC	2 cut(s)	267, 311
Alw44I	GTGCAC	1 cut(s)	466
Aor13HI	TCCGGA	2 cut(s)	191, 493
AoxI	GGCC	1 cut(s)	255
ApaLI	GTGCAC	1 cut(s)	466
AseI	ATTAAT	1 cut(s)	204
AspLEI	GCGC	1 cut(s)	295
AspS9I	GGNCC	3 cut(s)	55, 194, 298
AsuC2I	CCSGG	2 cut(s)	199, 254
AsuHPI	GGTGA	2 cut(s)	85, 629
AvaII	GGWCC	3 cut(s)	55, 194, 298
BaeGI	GKGCMC	1 cut(s)	470
BanII	GRGCYC	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	171
Bbv12I	GWGCWC	2 cut(s)	470, 606
BccI	CCATC	2 cut(s)	53, 335
BceAI	ACGGC	2 cut(s)	306, 496
BcnI	CCSGG	2 cut(s)	199, 254
BcoDI	GTCTC	2 cut(s)	267, 311
BfuAI	ACCTGC	1 cut(s)	286
BisI	GCNGC	1 cut(s)	503
BlsI	GCNGC	1 cut(s)	504
Bme1390I	CCNGG	2 cut(s)	199, 254
Bme18I	GGWCC	3 cut(s)	55, 194, 298
BmgT120I	GGNCC	3 cut(s)	55, 194, 298
BmiI	GGNNCC	3 cut(s)	57, 196, 300
BmrFI	CCNGG	2 cut(s)	199, 254
BmsI	GCATC	1 cut(s)	230
BpiI	GAAGAC	1 cut(s)	171
BplI	GAGNNNNNCTC	2 cut(s)	308, 340
BpmI	CTGGAG	1 cut(s)	218
Bpu10I	CCTNAGC	1 cut(s)	510
BpuMI	CCSGG	2 cut(s)	199, 254
BsaHI	GRCGYC	1 cut(s)	438
BsaI	GGTCTC	2 cut(s)	267, 311
BsaJI	CCNNGG	5 cut(s)	197, 252, 258, 429, 649
BsaWI	WCCGGW	4 cut(s)	191, 410, 493, 617
BsaXI	ACNNNNNCTCC	2 cut(s)	392, 422
Bsc4I	CCNNNNNNNGG	3 cut(s)	198, 259, 430
Bse3DI	GCAATG	1 cut(s)	486
BseAI	TCCGGA	2 cut(s)	191, 493
BseDI	CCNNGG	5 cut(s)	197, 252, 258, 429, 649
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	3 cut(s)	198, 259, 430
BseMI	GCAATG	1 cut(s)	486
BseRI	GAGGAG	2 cut(s)	13, 75
BseSI	GKGCMC	1 cut(s)	470
BshFI	GGCC	1 cut(s)	257
BsiHKAI	GWGCWC	2 cut(s)	470, 606
BsiSI	CCGG	6 cut(s)	192, 199, 254, 411, 494, 618
BslFI	GGGAC	2 cut(s)	284, 413
BslI	CCNNNNNNNGG	3 cut(s)	198, 259, 430
BsmAI	GTCTC	2 cut(s)	267, 311
BsmFI	GGGAC	2 cut(s)	284, 413
BsnI	GGCC	1 cut(s)	257
Bso31I	GGTCTC	2 cut(s)	267, 311
Bsp1286I	GDGCHC	3 cut(s)	15, 470, 606
Bsp13I	TCCGGA	2 cut(s)	191, 493
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	3 cut(s)	217, 249, 503
BspANI	GGCC	1 cut(s)	257
BspEI	TCCGGA	2 cut(s)	191, 493
BspHI	TCATGA	1 cut(s)	61
BspLI	GGNNCC	3 cut(s)	57, 196, 300
BspMI	ACCTGC	1 cut(s)	286
BspTNI	GGTCTC	2 cut(s)	267, 311
BsrDI	GCAATG	1 cut(s)	486
BssECI	CCNNGG	5 cut(s)	197, 252, 258, 429, 649
BssNI	GRCGYC	1 cut(s)	438
BssT1I	CCWWGG	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	312
Bst6I	CTCTTC	1 cut(s)	175
BstACI	GRCGYC	1 cut(s)	438
BstC8I	GCNNGC	1 cut(s)	507
BstDEI	CTNAG	2 cut(s)	510, 566
BstDSI	CCRYGG	3 cut(s)	258, 429, 649
BstF5I	GGATG	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	295
BstMAI	GTCTC	2 cut(s)	267, 311
BstMWI	GCNNNNNNNGC	1 cut(s)	595
BstSCI	CCNGG	2 cut(s)	197, 252
BstSLI	GKGCMC	1 cut(s)	470
BstV2I	GAAGAC	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	257
BtgI	CCRYGG	3 cut(s)	258, 429, 649
BtgZI	GCGATG	1 cut(s)	253
BtsCI	GGATG	1 cut(s)	163
BveI	ACCTGC	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	507
CciI	TCATGA	1 cut(s)	61
CfoI	GCGC	1 cut(s)	295
Cfr13I	GGNCC	3 cut(s)	55, 194, 298
CseI	GACGC	1 cut(s)	446
Csp6I	GTAC	1 cut(s)	478
CviAII	CATG	5 cut(s)	62, 140, 259, 268, 358
CviJI	RGCY	8 cut(s)	13, 257, 263, 283, 307, 324, 341, 509
CviKI_1	RGCY	8 cut(s)	13, 257, 263, 283, 307, 324, 341, 509
CviQI	GTAC	1 cut(s)	478
DdeI	CTNAG	2 cut(s)	510, 566
DraIII	CACNNNGTG	2 cut(s)	430, 465
EaeI	YGGCCR	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	175
EarI	CTCTTC	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	15
Eco31I	GGTCTC	2 cut(s)	267, 311
Eco47I	GGWCC	3 cut(s)	55, 194, 298
Eco57I	CTGAAG	1 cut(s)	299
EcoO109I	RGGNCCY	2 cut(s)	55, 298
EcoT14I	CCWWGG	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	5 cut(s)	65, 143, 262, 271, 361
FaqI	GGGAC	2 cut(s)	284, 413
FatI	CATG	5 cut(s)	61, 139, 258, 267, 357
FauI	CCCGC	1 cut(s)	224
Fnu4HI	GCNGC	1 cut(s)	503
FokI	GGATG	1 cut(s)	150
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	503
GlaI	GCGC	1 cut(s)	294
GluI	GCNGC	1 cut(s)	503
GsuI	CTGGAG	1 cut(s)	218
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	6 cut(s)	192, 199, 254, 411, 494, 618
HgaI	GACGC	1 cut(s)	446
HhaI	GCGC	1 cut(s)	295
Hin1I	GRCGYC	1 cut(s)	438
Hin1II	CATG	5 cut(s)	65, 143, 262, 271, 361
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HinfI	GANTC	2 cut(s)	621, 631
HpaII	CCGG	6 cut(s)	192, 199, 254, 411, 494, 618
HphI	GGTGA	2 cut(s)	85, 629
Hpy166II	GTNNAC	2 cut(s)	436, 468
Hpy188I	TCNGA	4 cut(s)	213, 316, 335, 418
Hpy188III	TCNNGA	4 cut(s)	62, 192, 494, 613
Hpy8I	GTNNAC	2 cut(s)	436, 468
HpyCH4III	ACNGT	1 cut(s)	312
HpyCH4V	TGCA	3 cut(s)	243, 468, 598
HpyF10VI	GCNNNNNNNGC	1 cut(s)	595
HpyF3I	CTNAG	2 cut(s)	510, 566
Hsp92I	GRCGYC	1 cut(s)	438
Hsp92II	CATG	5 cut(s)	65, 143, 262, 271, 361
HspAI	GCGC	1 cut(s)	293
Kpn2I	TCCGGA	2 cut(s)	191, 493
LmnI	GCTCC	3 cut(s)	214, 329, 496
LweI	GCATC	1 cut(s)	230
MaeIII	GTNAC	2 cut(s)	348, 457
MboII	GAAGA	3 cut(s)	162, 171, 180
MfeI	CAATTG	1 cut(s)	102
MhlI	GDGCHC	3 cut(s)	15, 470, 606
MluCI	AATT	2 cut(s)	102, 580
MlyI	GAGTC	1 cut(s)	640
MmeI	TCCRAC	1 cut(s)	236
MnlI	CCTC	9 cut(s)	34, 46, 69, 93, 96, 101, 178, 193, 452
MroI	TCCGGA	2 cut(s)	191, 493
MseI	TTAA	1 cut(s)	204
MslI	CAYNNNNRTG	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	505
MspI	CCGG	6 cut(s)	192, 199, 254, 411, 494, 618
MspR9I	CCNGG	2 cut(s)	199, 254
MunI	CAATTG	1 cut(s)	102
MwoI	GCNNNNNNNGC	1 cut(s)	595
NciI	CCSGG	2 cut(s)	199, 254
NcoI	CCATGG	1 cut(s)	258
NlaIII	CATG	5 cut(s)	65, 143, 262, 271, 361
NlaIV	GGNNCC	3 cut(s)	57, 196, 300
NmuCI	GTSAC	1 cut(s)	457
PagI	TCATGA	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	621
PflMI	CCANNNNNTGG	1 cut(s)	430
PkrI	GCNGC	1 cut(s)	504
PleI	GAGTC	1 cut(s)	639
PpsI	GAGTC	1 cut(s)	639
PpuMI	RGGWCCY	2 cut(s)	55, 298
PshBI	ATTAAT	1 cut(s)	204
Psp5II	RGGWCCY	2 cut(s)	55, 298
PspN4I	GGNNCC	3 cut(s)	57, 196, 300
PspPI	GGNCC	3 cut(s)	55, 194, 298
PspPPI	RGGWCCY	2 cut(s)	55, 298
RsaI	GTAC	1 cut(s)	479
RsaNI	GTAC	1 cut(s)	478
RseI	CAYNNNNRTG	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	1 cut(s)	503
Sau96I	GGNCC	3 cut(s)	55, 194, 298
SchI	GAGTC	1 cut(s)	640
ScrFI	CCNGG	2 cut(s)	199, 254
SduI	GDGCHC	3 cut(s)	15, 470, 606
SetI	ASST	5 cut(s)	279, 300, 326, 343, 516
SfaNI	GCATC	1 cut(s)	230
SinI	GGWCC	3 cut(s)	55, 194, 298
SmiMI	CAYNNNNRTG	1 cut(s)	138
Sse9I	AATT	2 cut(s)	102, 580
SsiI	CCGC	3 cut(s)	217, 249, 503
StyD4I	CCNGG	2 cut(s)	197, 252
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	312
TasI	AATT	2 cut(s)	102, 580
TauI	GCSGC	1 cut(s)	505
TfiI	GAWTC	1 cut(s)	621
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TseFI	GTSAC	1 cut(s)	457
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	2 cut(s)	159, 162
Van91I	CCANNNNNTGG	1 cut(s)	430
VneI	GTGCAC	1 cut(s)	466
VpaK11BI	GGWCC	3 cut(s)	55, 194, 298
VspI	ATTAAT	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.