RLG00000023117

Potassium channel

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
18390911 .. 18392921
2011 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023117

Sequence Viewer

Length: 1143 bp
ATGGAGAATGAACCTTTTCTCTCCTCCCAACCCCCACTTAAACCCATCATTGAGGACCCTCATGATTTCTCTTTCAATCTCCCTCCTCCCCTCACCGACCCAATTGTGCTTCTCTTTCAAGAACCCCCACACCAACATGATGAAATACACCAAGACCCACATCCCTCTTCGTCTTCCTCATCTTCCGGACCCCGGAATGCCCCGACCCGCAAACCCACCGTTCTCCAGCGATGCAAGACCGCCCCGGCCATGGCTGTCATGCGAGACCTGAAGCCAAAGACGGCCCAGGTCCCCAAGCCACAGTCCGAGACCAGCTCCATCATCAGACAAGCTGTGTTGTTACTTGTCATGTATCTTTCTCTCGGTGTTGTAATATACTCTTTCAACAGGGACAAGTTCTCCGGTACGGAAACCCACCCGGTGGTTGACGCCCTCTACTTTTGTATAGTCACTATGTGCACGATTGGGTACGGCGACATTGCTCCGGAGACGCCGCTGGCTAAGGTGTTTTCGTGTGTGTTTGTGTTGGTGGGGTTTGGATTTATTGATATCTTGCTTAGTGGGGTGGTCAATTATGTGCTGGACTTGCAAGAGAACATAATCTTGACCGGAATCCAAATGAGTCACCACCACCACCACCACGGCAGTAAAAGCCACCATGGATTTTCGGACTACATTGTTGATGTGGCCAAGGGGAGGATGAGGATCAGACTCAAGGTGGGTCTGGCGCTTGGTGTGGTGGTGATGTGCATTGGCATGGGGACTCTGGTTTTGTGTTTTTTGGAGGATTTGGATTGGGTTGATTCCATTTATTTGTCTGTTATGTCGGTTACAACTGTTGGGTATGGGGACAAGGCCTTCAAGTCGCTGCCGGGGCGGCTTTTCGCGGCGGTTTGGCTTCTGTTTTCGACACTGGCGGTGGCGAGAGCCTTTTTGTATTTGGCAGAGGCGAGGGTGGATAAGAGACACAGGAAAATTGTCAAGTGGGTATTGCATAGGGAGATCACTGTCCAGGATTTGCTTGCTGCTGACATCAATAACCATGGCTTTATCAGGAGTACAGATGCATTATGGGGAAAGTATGGAAATGTTGATGAGGAAAGCCTGGATATTTGGATTTCCGACAAATCTTTGGATGATTAA

Protein Analysis

381

Amino Acids

42.35

Weight (kDa)

6.27

Isoelectric Point (pI)

33.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 112 - 192 5.8e-07 Ion transport protein
Ion_trans_2 PF07885 114 - 193 1.7e-16 Ion channel
Ion_trans_2 PF07885 247 - 316 6.9e-12 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 421
AccII CGCG 1 cut(s) 887
AccIII TCCGGA 2 cut(s) 185, 484
AciI CCGC 7 cut(s) 208, 240, 494, 877, 887, 890, 917
AclWI GGATC 1 cut(s) 713
AcoI YGGCCR 2 cut(s) 246, 687
AcuI CTGAAG 1 cut(s) 290
AcyI GRCGYC 2 cut(s) 429, 491
AdeI CACNNNGTG 2 cut(s) 421, 456
AfaI GTAC 3 cut(s) 406, 470, 1060
AfiI CCNNNNNNNGG 4 cut(s) 192, 250, 421, 696
AgsI TTSAA 4 cut(s) 76, 119, 385, 862
AjnI CCWGG 3 cut(s) 285, 1011, 1104
AluBI AGCT 2 cut(s) 315, 332
AluI AGCT 2 cut(s) 315, 332
Alw21I GWGCWC 1 cut(s) 461
Alw26I GTCTC 4 cut(s) 258, 302, 482, 958
Alw44I GTGCAC 1 cut(s) 457
AlwI GGATC 1 cut(s) 713
Aor13HI TCCGGA 2 cut(s) 185, 484
AoxI GGCC 4 cut(s) 246, 282, 687, 855
ApaLI GTGCAC 1 cut(s) 457
ApeKI GCWGC 2 cut(s) 868, 1025
ArsI GACNNNNNNTTYG 2 cut(s) 754, 786
Asp700I GAANNNNTTC 1 cut(s) 15
AspLEI GCGC 1 cut(s) 730
AspS9I GGNCC 4 cut(s) 55, 188, 283, 289
AsuC2I CCSGG 4 cut(s) 193, 245, 419, 873
AsuHPI GGTGA 3 cut(s) 85, 617, 754
AvaII GGWCC 3 cut(s) 55, 188, 289
BaeGI GKGCMC 1 cut(s) 461
BalI TGGCCA 1 cut(s) 689
BbsI GAAGAC 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 461
BbvI GCAGC 2 cut(s) 855, 1012
BccI CCATC 2 cut(s) 53, 326
BceAI ACGGC 3 cut(s) 297, 487, 658
BciT130I CCWGG 3 cut(s) 287, 1013, 1106
BcnI CCSGG 4 cut(s) 193, 245, 419, 873
BcoDI GTCTC 4 cut(s) 258, 302, 482, 958
BfoI RGCGCY 1 cut(s) 731
BglI GCCNNNNNGGC 1 cut(s) 877
BisI GCNGC 5 cut(s) 494, 869, 878, 888, 1026
BlsI GCNGC 5 cut(s) 495, 870, 879, 889, 1027
Bme1390I CCNGG 7 cut(s) 193, 245, 287, 419, 873, 1013, 1106
Bme18I GGWCC 3 cut(s) 55, 188, 289
BmgT120I GGNCC 4 cut(s) 55, 188, 283, 289
BmiI GGNNCC 3 cut(s) 57, 190, 291
BmrFI CCNGG 7 cut(s) 193, 245, 287, 419, 873, 1013, 1106
BmsI GCATC 2 cut(s) 221, 1054
BpiI GAAGAC 1 cut(s) 165
BplI GAGNNNNNCTC 2 cut(s) 299, 331
BpmI CTGGAG 1 cut(s) 209
Bpu10I CCTNAGC 1 cut(s) 501
BpuEI CTTGAG 1 cut(s) 698
BpuMI CCSGG 4 cut(s) 193, 245, 419, 873
BsaBI GATNNNNATC 1 cut(s) 704
BsaHI GRCGYC 2 cut(s) 429, 491
BsaI GGTCTC 2 cut(s) 258, 302
BsaJI CCNNGG 9 cut(s) 191, 243, 249, 285, 640, 658, 690, 872, 1042
BsaWI WCCGGW 4 cut(s) 185, 401, 484, 608
BsaXI ACNNNNNCTCC 2 cut(s) 383, 413
Bsc4I CCNNNNNNNGG 4 cut(s) 192, 250, 421, 696
Bse1I ACTGG 1 cut(s) 918
Bse3DI GCAATG 1 cut(s) 477
Bse8I GATNNNNATC 1 cut(s) 704
BseAI TCCGGA 2 cut(s) 185, 484
BseBI CCWGG 3 cut(s) 287, 1013, 1106
BseDI CCNNGG 9 cut(s) 191, 243, 249, 285, 640, 658, 690, 872, 1042
BseGI GGATG 3 cut(s) 160, 705, 1141
BseJI GATNNNNATC 1 cut(s) 704
BseLI CCNNNNNNNGG 4 cut(s) 192, 250, 421, 696
BseMI GCAATG 1 cut(s) 477
BseNI ACTGG 1 cut(s) 918
BseRI GAGGAG 2 cut(s) 13, 75
BseSI GKGCMC 1 cut(s) 461
BseXI GCAGC 2 cut(s) 855, 1012
Bsh1236I CGCG 1 cut(s) 887
BshFI GGCC 4 cut(s) 248, 284, 689, 857
BsiHKAI GWGCWC 1 cut(s) 461
BsiSI CCGG 8 cut(s) 186, 193, 245, 402, 419, 485, 609, 872
BslFI GGGAC 4 cut(s) 275, 404, 775, 863
BslI CCNNNNNNNGG 4 cut(s) 192, 250, 421, 696
BsmAI GTCTC 4 cut(s) 258, 302, 482, 958
BsmBI CGTCTC 1 cut(s) 482
BsmFI GGGAC 4 cut(s) 275, 404, 775, 863
BsmI GAATGC 1 cut(s) 202
BsnI GGCC 4 cut(s) 248, 284, 689, 857
Bso31I GGTCTC 2 cut(s) 258, 302
Bsp1286I GDGCHC 1 cut(s) 461
Bsp13I TCCGGA 2 cut(s) 185, 484
Bsp143I GATC 2 cut(s) 705, 1002
Bsp19I CCATGG 3 cut(s) 249, 658, 1042
BspACI CCGC 7 cut(s) 208, 240, 494, 877, 887, 890, 917
BspANI GGCC 4 cut(s) 248, 284, 689, 857
BspEI TCCGGA 2 cut(s) 185, 484
BspFNI CGCG 1 cut(s) 887
BspHI TCATGA 1 cut(s) 61
BspLI GGNNCC 3 cut(s) 57, 190, 291
BspPI GGATC 1 cut(s) 713
BspTNI GGTCTC 2 cut(s) 258, 302
BsrDI GCAATG 1 cut(s) 477
BsrI ACTGG 1 cut(s) 918
BssECI CCNNGG 9 cut(s) 191, 243, 249, 285, 640, 658, 690, 872, 1042
BssMI GATC 2 cut(s) 705, 1002
BssNI GRCGYC 2 cut(s) 429, 491
BssT1I CCWWGG 4 cut(s) 249, 658, 690, 1042
Bst2UI CCWGG 3 cut(s) 287, 1013, 1106
Bst4CI ACNGT 4 cut(s) 220, 303, 838, 1009
Bst6I CTCTTC 1 cut(s) 172
BstACI GRCGYC 2 cut(s) 429, 491
BstC8I GCNNGC 2 cut(s) 498, 1023
BstDEI CTNAG 2 cut(s) 501, 557
BstDSI CCRYGG 4 cut(s) 249, 640, 658, 1042
BstF5I GGATG 3 cut(s) 160, 705, 1141
BstFNI CGCG 1 cut(s) 887
BstH2I RGCGCY 1 cut(s) 731
BstHHI GCGC 1 cut(s) 730
BstKTI GATC 2 cut(s) 708, 1005
BstMAI GTCTC 4 cut(s) 258, 302, 482, 958
BstMBI GATC 2 cut(s) 705, 1002
BstMWI GCNNNNNNNGC 4 cut(s) 586, 651, 874, 877
BstNI CCWGG 3 cut(s) 287, 1013, 1106
BstSCI CCNGG 7 cut(s) 191, 243, 285, 417, 871, 1011, 1104
BstSLI GKGCMC 1 cut(s) 461
BstUI CGCG 1 cut(s) 887
BstV1I GCAGC 2 cut(s) 855, 1012
BstV2I GAAGAC 1 cut(s) 165
BsuRI GGCC 4 cut(s) 248, 284, 689, 857
BtgI CCRYGG 4 cut(s) 249, 640, 658, 1042
BtgZI GCGATG 1 cut(s) 244
BtsCI GGATG 3 cut(s) 160, 705, 1141
BtsIMutI CAGTG 2 cut(s) 911, 1005
Cac8I GCNNGC 2 cut(s) 498, 1023
CciI TCATGA 1 cut(s) 61
CfoI GCGC 1 cut(s) 730
Cfr13I GGNCC 4 cut(s) 55, 188, 283, 289
CseI GACGC 2 cut(s) 437, 499
Csp6I GTAC 3 cut(s) 405, 469, 1059
CviAII CATG 8 cut(s) 62, 137, 250, 259, 349, 659, 757, 1043
CviQI GTAC 3 cut(s) 405, 469, 1059
DdeI CTNAG 2 cut(s) 501, 557
DpnI GATC 2 cut(s) 707, 1004
DpnII GATC 2 cut(s) 705, 1002
DraIII CACNNNGTG 2 cut(s) 421, 456
EaeI YGGCCR 2 cut(s) 246, 687
Eam1104I CTCTTC 1 cut(s) 172
EarI CTCTTC 1 cut(s) 172
Eco130I CCWWGG 4 cut(s) 249, 658, 690, 1042
Eco147I AGGCCT 1 cut(s) 857
Eco31I GGTCTC 2 cut(s) 258, 302
Eco32I GATATC 1 cut(s) 550
Eco47I GGWCC 3 cut(s) 55, 188, 289
Eco57I CTGAAG 1 cut(s) 290
EcoO109I RGGNCCY 2 cut(s) 55, 289
EcoRII CCWGG 3 cut(s) 285, 1011, 1104
EcoRV GATATC 1 cut(s) 550
EcoT14I CCWWGG 4 cut(s) 249, 658, 690, 1042
EcoT22I ATGCAT 1 cut(s) 1069
ErhI CCWWGG 4 cut(s) 249, 658, 690, 1042
Esp3I CGTCTC 1 cut(s) 482
FaeI CATG 8 cut(s) 65, 140, 253, 262, 352, 662, 760, 1046
FaqI GGGAC 4 cut(s) 275, 404, 775, 863
FatI CATG 8 cut(s) 61, 136, 249, 258, 348, 658, 756, 1042
FauI CCCGC 1 cut(s) 215
Fnu4HI GCNGC 5 cut(s) 494, 869, 878, 888, 1026
FokI GGATG 2 cut(s) 147, 712
Fsp4HI GCNGC 5 cut(s) 494, 869, 878, 888, 1026
GlaI GCGC 1 cut(s) 729
GluI GCNGC 5 cut(s) 494, 869, 878, 888, 1026
GsuI CTGGAG 1 cut(s) 209
HaeII RGCGCY 1 cut(s) 731
HaeIII GGCC 4 cut(s) 248, 284, 689, 857
HapII CCGG 8 cut(s) 186, 193, 245, 402, 419, 485, 609, 872
HgaI GACGC 2 cut(s) 437, 499
HhaI GCGC 1 cut(s) 730
Hin1I GRCGYC 2 cut(s) 429, 491
Hin1II CATG 8 cut(s) 65, 140, 253, 262, 352, 662, 760, 1046
Hin6I GCGC 1 cut(s) 728
HinP1I GCGC 1 cut(s) 728
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HinfI GANTC 5 cut(s) 612, 622, 711, 763, 803
HpaII CCGG 8 cut(s) 186, 193, 245, 402, 419, 485, 609, 872
HphI GGTGA 3 cut(s) 85, 617, 754
Hpy166II GTNNAC 2 cut(s) 427, 459
Hpy188I TCNGA 5 cut(s) 307, 326, 670, 710, 1123
Hpy188III TCNNGA 6 cut(s) 62, 119, 186, 485, 604, 1054
Hpy8I GTNNAC 2 cut(s) 427, 459
HpyAV CCTTC 1 cut(s) 868
HpyCH4III ACNGT 4 cut(s) 220, 303, 838, 1009
HpyCH4V TGCA 6 cut(s) 234, 459, 589, 750, 994, 1067
HpyF10VI GCNNNNNNNGC 4 cut(s) 586, 651, 874, 877
HpyF3I CTNAG 2 cut(s) 501, 557
Hsp92I GRCGYC 2 cut(s) 429, 491
Hsp92II CATG 8 cut(s) 65, 140, 253, 262, 352, 662, 760, 1046
HspAI GCGC 1 cut(s) 728
Kpn2I TCCGGA 2 cut(s) 185, 484
Kzo9I GATC 2 cut(s) 705, 1002
LmnI GCTCC 2 cut(s) 320, 487
Lsp1109I GCAGC 2 cut(s) 855, 1012
LweI GCATC 2 cut(s) 221, 1054
MaeIII GTNAC 4 cut(s) 339, 448, 623, 829
MalI GATC 2 cut(s) 707, 1004
MboI GATC 2 cut(s) 705, 1002
MboII GAAGA 3 cut(s) 159, 165, 174
MfeI CAATTG 1 cut(s) 102
MhlI GDGCHC 1 cut(s) 461
MlsI TGGCCA 1 cut(s) 689
MluCI AATT 3 cut(s) 102, 571, 975
MluNI TGGCCA 1 cut(s) 689
MlyI GAGTC 3 cut(s) 631, 705, 757
Mox20I TGGCCA 1 cut(s) 689
Mph1103I ATGCAT 1 cut(s) 1069
MroI TCCGGA 2 cut(s) 185, 484
MroXI GAANNNNTTC 1 cut(s) 15
MscI TGGCCA 1 cut(s) 689
MseI TTAA 2 cut(s) 39, 1141
MslI CAYNNNNRTG 2 cut(s) 135, 755
Msp20I TGGCCA 1 cut(s) 689
MspA1I CMGCKG 1 cut(s) 496
MspI CCGG 8 cut(s) 186, 193, 245, 402, 419, 485, 609, 872
MspR9I CCNGG 7 cut(s) 193, 245, 287, 419, 873, 1013, 1106
MunI CAATTG 1 cut(s) 102
Mva1269I GAATGC 1 cut(s) 202
MvaI CCWGG 3 cut(s) 287, 1013, 1106
MvnI CGCG 1 cut(s) 887
MwoI GCNNNNNNNGC 4 cut(s) 586, 651, 874, 877
NciI CCSGG 4 cut(s) 193, 245, 419, 873
NcoI CCATGG 3 cut(s) 249, 658, 1042
NdeII GATC 2 cut(s) 705, 1002
NlaIII CATG 8 cut(s) 65, 140, 253, 262, 352, 662, 760, 1046
NlaIV GGNNCC 3 cut(s) 57, 190, 291
NmuCI GTSAC 2 cut(s) 448, 623
NsiI ATGCAT 1 cut(s) 1069
PagI TCATGA 1 cut(s) 61
PceI AGGCCT 1 cut(s) 857
PctI GAATGC 1 cut(s) 202
PdmI GAANNNNTTC 1 cut(s) 15
PfeI GAWTC 2 cut(s) 612, 803
PflMI CCANNNNNTGG 1 cut(s) 421
PfoI TCCNGGA 1 cut(s) 1011
PkrI GCNGC 5 cut(s) 495, 870, 879, 889, 1027
PleI GAGTC 3 cut(s) 630, 705, 757
PpsI GAGTC 3 cut(s) 630, 705, 757
PpuMI RGGWCCY 2 cut(s) 55, 289
Psp5II RGGWCCY 2 cut(s) 55, 289
Psp6I CCWGG 3 cut(s) 285, 1011, 1104
PspGI CCWGG 3 cut(s) 285, 1011, 1104
PspN4I GGNNCC 3 cut(s) 57, 190, 291
PspPI GGNCC 4 cut(s) 55, 188, 283, 289
PspPPI RGGWCCY 2 cut(s) 55, 289
RsaI GTAC 3 cut(s) 406, 470, 1060
RsaNI GTAC 3 cut(s) 405, 469, 1059
RseI CAYNNNNRTG 2 cut(s) 135, 755
SaqAI TTAA 2 cut(s) 39, 1141
SatI GCNGC 5 cut(s) 494, 869, 878, 888, 1026
Sau3AI GATC 2 cut(s) 705, 1002
Sau96I GGNCC 4 cut(s) 55, 188, 283, 289
SchI GAGTC 3 cut(s) 631, 705, 757
ScrFI CCNGG 7 cut(s) 193, 245, 287, 419, 873, 1013, 1106
SduI GDGCHC 1 cut(s) 461
SetI ASST 7 cut(s) 16, 270, 291, 317, 334, 507, 720
SfaNI GCATC 2 cut(s) 221, 1054
SinI GGWCC 3 cut(s) 55, 188, 289
SmiMI CAYNNNNRTG 2 cut(s) 135, 755
SmlI CTYRAG 1 cut(s) 713
SmoI CTYRAG 1 cut(s) 713
Sse9I AATT 3 cut(s) 102, 571, 975
SseBI AGGCCT 1 cut(s) 857
SsiI CCGC 7 cut(s) 208, 240, 494, 877, 887, 890, 917
StuI AGGCCT 1 cut(s) 857
StyD4I CCNGG 7 cut(s) 191, 243, 285, 417, 871, 1011, 1104
StyI CCWWGG 4 cut(s) 249, 658, 690, 1042
TaaI ACNGT 4 cut(s) 220, 303, 838, 1009
TaqI TCGA 1 cut(s) 908
TasI AATT 3 cut(s) 102, 571, 975
TatI WGTACW 1 cut(s) 1058
TauI GCSGC 3 cut(s) 496, 880, 890
TfiI GAWTC 2 cut(s) 612, 803
Tru1I TTAA 2 cut(s) 39, 1141
Tru9I TTAA 2 cut(s) 39, 1141
TscAI CASTG 2 cut(s) 918, 1012
TseFI GTSAC 2 cut(s) 448, 623
TseI GCWGC 2 cut(s) 868, 1025
Tsp45I GTSAC 2 cut(s) 448, 623
TspDTI ATGAA 2 cut(s) 24, 156
TspGWI ACGGA 1 cut(s) 422
TspRI CASTG 2 cut(s) 918, 1012
Van91I CCANNNNNTGG 1 cut(s) 421
VneI GTGCAC 1 cut(s) 457
VpaK11BI GGWCC 3 cut(s) 55, 188, 289
XmnI GAANNNNTTC 1 cut(s) 15
Zsp2I ATGCAT 1 cut(s) 1069
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.