Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006185

Physical Location & Seq

Genomic Coordinates Forward (+)

65027109 .. 65027577

Gene Structure 469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035326

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGCTGTCATGCGTGACCTGAAGCCAAAGACGGCCCAGGCCCCCAAGCCACAGGCCGAGACCAGCTCCATCATCAGACAAGCTATGCTGTTACTTGTCATGTATCTTTCTCTCAGTGTTGTAATATACTCTTTCAACAGGAACAAGTTCTTTGTTATGGAAACCCACCCTGTGGTTGACGCCTTTGGGGTGGTCAATTATGTGCTGGACTTGCAAAAGAACATAATCTTAACCGGAATCCAAATGAGTCATCACCACCACCACGACTACGTCTCCACCATCTGCTCTGCCGCCGGCGTCATCGCAGTCTTGGTCGAGTACGGCCTCTTCCCGACCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009705 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022840 GO:0022841 GO:0022842 GO:0022857 GO:0022890 GO:0030001 GO:0030322 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ion_trans_2

Protein Analysis

114

Amino Acids

12.69

Weight (kDa)

8.82

Isoelectric Point (pI)

32.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01840
fragaria_vesca	FvH4_1g26310 FvH4_1g26310
malus_domestica	MD09G1289500.v1.1 MD17G1284200.v1.1
prunus_persica	Prupe.3G003200_v2.0.a1 Prupe.3G003200_v2.0.a1 Prupe.5G044500_v2.0.a1
pyrus_communis	pycom09g19750 pycom14g08130 pycom17g28020
rosa_chinensis	RchiOBHm_Chr1g0333551 RchiOBHm_Chr3g0485981
rosa_laevigata	RLG00000023117 RLG00000035326
rosa_multiflora	Rmu_sc0003151.1_g000035 Rmu_sc0004032.1_g000015 Rmu_sc0009687.1_g000001 Rmu_sc0041532.1_g000001
rosa_roxburghii	Rroxscaffold_6G00396140
rosa_rugosa	Rorug03G0223100
rosa_samantha	Rh3AG272700 Rh3BG307400 Rh3CG306000 Rh3DG302300
rosa_wichuraiana	Rw3G024180 Rw6G027690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	172
AciI	CCGC	1 cut(s)	291
AcuI	CTGAAG	1 cut(s)	41
AcyI	GRCGYC	2 cut(s)	180, 297
AdeI	CACNNNGTG	1 cut(s)	172
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	1 cut(s)	136
AjnI	CCWGG	1 cut(s)	36
AluBI	AGCT	2 cut(s)	66, 83
AluI	AGCT	2 cut(s)	66, 83
Alw26I	GTCTC	2 cut(s)	53, 277
AoxI	GGCC	4 cut(s)	33, 39, 54, 322
Asp700I	GAANNNNTTC	1 cut(s)	146
AspS9I	GGNCC	2 cut(s)	34, 40
AsuHPI	GGTGA	1 cut(s)	245
BarI	GAAGNNNNNNTAC	1 cut(s)	311
BccI	CCATC	2 cut(s)	77, 287
BceAI	ACGGC	2 cut(s)	48, 337
BciT130I	CCWGG	1 cut(s)	38
BcoDI	GTCTC	2 cut(s)	53, 277
BisI	GCNGC	1 cut(s)	291
BlsI	GCNGC	1 cut(s)	292
Bme1390I	CCNGG	1 cut(s)	38
BmgT120I	GGNCC	2 cut(s)	34, 40
BmiI	GGNNCC	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	38
BplI	GAGNNNNNCTC	2 cut(s)	50, 82
BsaHI	GRCGYC	2 cut(s)	180, 297
BsaI	GGTCTC	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	36
BsaWI	WCCGGW	1 cut(s)	233
BsaXI	ACNNNNNCTCC	2 cut(s)	257, 287
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse118I	RCCGGY	1 cut(s)	293
BseBI	CCWGG	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	36
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMII	CTCAG	1 cut(s)	127
BshFI	GGCC	4 cut(s)	35, 41, 56, 324
BsiSI	CCGG	2 cut(s)	234, 294
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	2 cut(s)	53, 277
BsmBI	CGTCTC	1 cut(s)	277
BsnI	GGCC	4 cut(s)	35, 41, 56, 324
Bso31I	GGTCTC	1 cut(s)	53
BspACI	CCGC	1 cut(s)	291
BspANI	GGCC	4 cut(s)	35, 41, 56, 324
BspCNI	CTCAG	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	42
BspTNI	GGTCTC	1 cut(s)	53
BsrFI	RCCGGY	1 cut(s)	293
BssAI	RCCGGY	1 cut(s)	293
BssECI	CCNNGG	1 cut(s)	36
BssNI	GRCGYC	2 cut(s)	180, 297
Bst2UI	CCWGG	1 cut(s)	38
Bst6I	CTCTTC	1 cut(s)	332
BstACI	GRCGYC	2 cut(s)	180, 297
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	1 cut(s)	113
BstMAI	GTCTC	2 cut(s)	53, 277
BstMWI	GCNNNNNNNGC	1 cut(s)	211
BstNI	CCWGG	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	36
BsuRI	GGCC	4 cut(s)	35, 41, 56, 324
BtgZI	GCGATG	1 cut(s)	286
BtsIMutI	CAGTG	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	295
Cfr10I	RCCGGY	1 cut(s)	293
Cfr13I	GGNCC	2 cut(s)	34, 40
CseI	GACGC	2 cut(s)	188, 286
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	2 cut(s)	10, 100
CviJI	RGCY	9 cut(s)	5, 25, 35, 41, 49, 56, 66, 83, 324
CviKI_1	RGCY	9 cut(s)	5, 25, 35, 41, 49, 56, 66, 83, 324
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	1 cut(s)	113
DraIII	CACNNNGTG	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	332
EarI	CTCTTC	1 cut(s)	332
Eco31I	GGTCTC	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	41
EcoO109I	RGGNCCY	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	36
Esp3I	CGTCTC	1 cut(s)	277
FaeI	CATG	2 cut(s)	13, 103
FaiI	YATR	7 cut(s)	11, 86, 101, 127, 158, 201, 224
FatI	CATG	2 cut(s)	9, 99
Fnu4HI	GCNGC	1 cut(s)	291
Fsp4HI	GCNGC	1 cut(s)	291
GluI	GCNGC	1 cut(s)	291
HaeIII	GGCC	4 cut(s)	35, 41, 56, 324
HapII	CCGG	2 cut(s)	234, 294
HgaI	GACGC	2 cut(s)	188, 286
Hin1I	GRCGYC	2 cut(s)	180, 297
Hin1II	CATG	2 cut(s)	13, 103
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	2 cut(s)	237, 247
HpaII	CCGG	2 cut(s)	234, 294
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	1 cut(s)	77
Hpy188III	TCNNGA	1 cut(s)	331
Hpy8I	GTNNAC	1 cut(s)	178
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	1 cut(s)	214
HpyF10VI	GCNNNNNNNGC	1 cut(s)	211
HpyF3I	CTNAG	1 cut(s)	113
HpySE526I	ACGT	1 cut(s)	270
Hsp92I	GRCGYC	2 cut(s)	180, 297
Hsp92II	CATG	2 cut(s)	13, 103
KroI	GCCGGC	1 cut(s)	293
KroNI	GCCGGC	1 cut(s)	295
LmnI	GCTCC	1 cut(s)	71
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	2 cut(s)	14, 90
MboII	GAAGA	1 cut(s)	319
MluCI	AATT	1 cut(s)	196
MlyI	GAGTC	1 cut(s)	256
MnlI	CCTC	1 cut(s)	335
MreI	CGCCGGCG	1 cut(s)	293
MroNI	GCCGGC	1 cut(s)	293
MroXI	GAANNNNTTC	1 cut(s)	146
MseI	TTAA	1 cut(s)	230
MspI	CCGG	2 cut(s)	234, 294
MspR9I	CCNGG	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	211
NaeI	GCCGGC	1 cut(s)	295
NgoMIV	GCCGGC	1 cut(s)	293
NlaIII	CATG	2 cut(s)	13, 103
NlaIV	GGNNCC	1 cut(s)	42
NmeAIII	GCCGAG	1 cut(s)	82
NmuCI	GTSAC	1 cut(s)	14
PdiI	GCCGGC	1 cut(s)	295
PdmI	GAANNNNTTC	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	237
PflFI	GACNNNGTC	1 cut(s)	269
PflMI	CCANNNNNTGG	1 cut(s)	172
PkrI	GCNGC	1 cut(s)	292
PleI	GAGTC	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	42
PspPI	GGNCC	2 cut(s)	34, 40
PsyI	GACNNNGTC	1 cut(s)	269
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	1 cut(s)	291
Sau96I	GGNCC	2 cut(s)	34, 40
SchI	GAGTC	1 cut(s)	256
ScrFI	CCNGG	1 cut(s)	38
SetI	ASST	4 cut(s)	21, 68, 85, 273
SgrAI	CRCCGGYG	1 cut(s)	293
Sse9I	AATT	1 cut(s)	196
SsiI	CCGC	1 cut(s)	291
StyD4I	CCNGG	1 cut(s)	36
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	1 cut(s)	315
TasI	AATT	1 cut(s)	196
TauI	GCSGC	1 cut(s)	293
TfiI	GAWTC	1 cut(s)	237
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	1 cut(s)	14
Tsp45I	GTSAC	1 cut(s)	14
TspRI	CASTG	1 cut(s)	121
Tth111I	GACNNNGTC	1 cut(s)	269
Van91I	CCANNNNNTGG	1 cut(s)	172
XmnI	GAANNNNTTC	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.