Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006185

Physical Location & Seq

Genomic Coordinates Forward (+)

18128210 .. 18130835

Gene Structure 2626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g26310.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGAAACCGAGCCTTTTCTCTCCTCCCCACAACAATCCCGACTTGAACCCATCATTGAGCACCCCCATGATTTCTCTTTCAATCTTCCTCCTCCCCTCACCGACCCTATTCTCCTCCTCTTCCCACAACCCCCTCACCAAAATGAAATCCACCAAGACCCACAACCCTCTTCCTCCTCATCTTACCGGAATGCCCCGACCCGCAAACCCAGCATTCTTACCCGATGCAAGACCGCCCCGGCCATGGCAGTCATGCGGGACCTGAAACCCAAGACGGCCCAGGTCCCCAAGCCACAGTCCGAGACCAGCTCCATCATCAGGCAAGCTGTGGTGTTACTTGTCATGTATCTTTCTCTCGGTGTTGTAATATACTCTTTCAACAGGGACAAGTTCTCTGGCATCGAAACTCACCCGGTTGTTGATGCTCTTTACTTCTGTATAGTCACTATGTGCACTATTGGGTACGGTGACATTGCTCCGCAAACGCCGCTGACGAAGGTGTTCTCGTGTGTGTTTGTGTTGGTGGGTTTTGGGTTTATTGACATCTTGCTTAGTGGGGTGGTTAACTATGTGTTGGACTTGCAAGAGAATATAATCTTGACCGGAATCCAAATGAGTCATCATCATCACCACGGCAACAGAAGCCACCGTGGGTTTTCGGACTACATTGTTGATGTGGCTAAAGGGAGGATGAGGATCAGACTCAAGGTGGGTCTGGCGCTTGGTGTGGTGGTCATGTGCATTGGCGTTGGGGCTCTGGTTTTGTGTTTTATGGAGGATTTGAGTTGGATTGATTCTATTTATTTGTCTGTTATGTCGGTTACGACCGTTGGATATGGGGACAAGGCCTTCAAGACGCTGCCGGGGCGGCTTTTCGCGGCAGTTTGGCTTTTGTTTTCAACCCTGGCGGTGGCGAGAGCGTTTTTGTATTTGGCTGAGGCGAGAGTGGATAAGAGACACAGGAAAATTGTCAAGTGGGTTTTGCATAGGGATATCACTGTCCAGGATTTGCTTGCTGCTGACATCAATAACCATGGCTTCATCAGCAAGTCAGAGTATATTGTGTACAAGCTCAAGGAGATGGGAAAGATAGATGAGAAAGATATTATGCAAATCTGTGATCAGTTCAGTAAGCTCGACTCAAACCACTCTGGGAAGATAACACTACCTGATTTGTTGGAGAACCGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009705 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022840 GO:0022841 GO:0022842 GO:0022857 GO:0022890 GO:0030001 GO:0030322 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ion_trans_2

Protein Analysis

398

Amino Acids

44.61

Weight (kDa)

8.37

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans_2	PF07885	113 - 170	6.6e-15	Ion channel
Ion_trans	PF00520	117 - 169	9.2e-06	Ion transport protein
Ion_trans_2	PF07885	223 - 292	2.7e-12	Ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01840
fragaria_vesca	FvH4_1g26310 FvH4_1g26310
malus_domestica	MD09G1289500.v1.1 MD17G1284200.v1.1
prunus_persica	Prupe.3G003200_v2.0.a1 Prupe.3G003200_v2.0.a1 Prupe.5G044500_v2.0.a1
pyrus_communis	pycom09g19750 pycom14g08130 pycom17g28020
rosa_chinensis	RchiOBHm_Chr1g0333551 RchiOBHm_Chr3g0485981
rosa_laevigata	RLG00000023117 RLG00000035326
rosa_multiflora	Rmu_sc0003151.1_g000035 Rmu_sc0004032.1_g000015 Rmu_sc0009687.1_g000001 Rmu_sc0041532.1_g000001
rosa_roxburghii	Rroxscaffold_6G00396140
rosa_rugosa	Rorug03G0223100
rosa_samantha	Rh3AG272700 Rh3BG307400 Rh3CG306000 Rh3DG302300
rosa_wichuraiana	Rw3G024180 Rw6G027690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	878
AciI	CCGC	9 cut(s)	202, 234, 256, 479, 488, 868, 878, 908, 1186
AclWI	GGATC	1 cut(s)	704
AcoI	YGGCCR	1 cut(s)	240
AdeI	CACNNNGTG	1 cut(s)	450
AfaI	GTAC	2 cut(s)	464, 1067
AfiI	CCNNNNNNNGG	3 cut(s)	244, 318, 910
AgsI	TTSAA	5 cut(s)	47, 82, 379, 853, 900
AjnI	CCWGG	3 cut(s)	279, 903, 1002
AluBI	AGCT	4 cut(s)	309, 326, 1072, 1135
AluI	AGCT	4 cut(s)	309, 326, 1072, 1135
Alw21I	GWGCWC	2 cut(s)	63, 455
Alw26I	GTCTC	2 cut(s)	296, 949
Alw44I	GTGCAC	1 cut(s)	451
AlwI	GGATC	1 cut(s)	704
AoxI	GGCC	3 cut(s)	240, 276, 846
ApaLI	GTGCAC	1 cut(s)	451
ApeKI	GCWGC	2 cut(s)	859, 1016
Asp700I	GAANNNNTTC	1 cut(s)	500
AspLEI	GCGC	1 cut(s)	721
AspS9I	GGNCC	3 cut(s)	259, 277, 283
AsuC2I	CCSGG	3 cut(s)	239, 413, 864
AsuHPI	GGTGA	5 cut(s)	91, 128, 401, 479, 620
AvaII	GGWCC	2 cut(s)	259, 283
BaeGI	GKGCMC	1 cut(s)	455
BanII	GRGCYC	1 cut(s)	757
BauI	CACGAG	1 cut(s)	505
Bbv12I	GWGCWC	2 cut(s)	63, 455
BbvCI	CCTCAGC	1 cut(s)	936
BbvI	GCAGC	2 cut(s)	846, 1003
BccI	CCATC	3 cut(s)	59, 320, 1075
BceAI	ACGGC	2 cut(s)	291, 649
BciT130I	CCWGG	3 cut(s)	281, 905, 1004
BclI	TGATCA	1 cut(s)	1120
BcnI	CCSGG	3 cut(s)	239, 413, 864
BcoDI	GTCTC	2 cut(s)	296, 949
BfoI	RGCGCY	1 cut(s)	722
BglI	GCCNNNNNGGC	1 cut(s)	868
BisI	GCNGC	5 cut(s)	488, 860, 869, 879, 1017
BlsI	GCNGC	5 cut(s)	489, 861, 870, 880, 1018
Bme1390I	CCNGG	6 cut(s)	239, 281, 413, 864, 905, 1004
Bme18I	GGWCC	2 cut(s)	259, 283
BmgT120I	GGNCC	3 cut(s)	259, 277, 283
BmiI	GGNNCC	2 cut(s)	260, 285
BmrFI	CCNGG	6 cut(s)	239, 281, 413, 864, 905, 1004
BmsI	GCATC	3 cut(s)	215, 408, 412
BplI	GAGNNNNNCTC	2 cut(s)	293, 325
Bpu10I	CCTNAGC	1 cut(s)	936
BpuEI	CTTGAG	2 cut(s)	689, 1058
BpuMI	CCSGG	3 cut(s)	239, 413, 864
BsaBI	GATNNNNATC	1 cut(s)	695
BsaI	GGTCTC	1 cut(s)	296
BsaJI	CCNNGG	8 cut(s)	237, 243, 279, 631, 649, 863, 903, 1033
BsaWI	WCCGGW	2 cut(s)	186, 602
Bsc4I	CCNNNNNNNGG	3 cut(s)	244, 318, 910
Bse3DI	GCAATG	1 cut(s)	471
Bse8I	GATNNNNATC	1 cut(s)	695
BseBI	CCWGG	3 cut(s)	281, 905, 1004
BseDI	CCNNGG	8 cut(s)	237, 243, 279, 631, 649, 863, 903, 1033
BseGI	GGATG	1 cut(s)	696
BseJI	GATNNNNATC	1 cut(s)	695
BseLI	CCNNNNNNNGG	3 cut(s)	244, 318, 910
BseMI	GCAATG	1 cut(s)	471
BseMII	CTCAG	1 cut(s)	927
BseRI	GAGGAG	5 cut(s)	13, 81, 104, 107, 166
BseSI	GKGCMC	1 cut(s)	455
BseXI	GCAGC	2 cut(s)	846, 1003
BseYI	CCCAGC	1 cut(s)	209
Bsh1236I	CGCG	1 cut(s)	878
Bsh1285I	CGRYCG	1 cut(s)	828
BshFI	GGCC	3 cut(s)	242, 278, 848
BsiEI	CGRYCG	1 cut(s)	828
BsiHKAI	GWGCWC	2 cut(s)	63, 455
BsiSI	CCGG	5 cut(s)	187, 239, 413, 603, 863
BslFI	GGGAC	4 cut(s)	269, 272, 398, 854
BslI	CCNNNNNNNGG	3 cut(s)	244, 318, 910
BsmAI	GTCTC	2 cut(s)	296, 949
BsmFI	GGGAC	4 cut(s)	269, 272, 398, 854
BsmI	GAATGC	2 cut(s)	196, 213
BsnI	GGCC	3 cut(s)	242, 278, 848
Bso31I	GGTCTC	1 cut(s)	296
Bsp1286I	GDGCHC	3 cut(s)	63, 455, 757
Bsp1407I	TGTACA	1 cut(s)	1065
Bsp143I	GATC	2 cut(s)	696, 1120
Bsp19I	CCATGG	2 cut(s)	243, 1033
BspACI	CCGC	9 cut(s)	202, 234, 256, 479, 488, 868, 878, 908, 1186
BspANI	GGCC	3 cut(s)	242, 278, 848
BspCNI	CTCAG	1 cut(s)	928
BspFNI	CGCG	1 cut(s)	878
BspLI	GGNNCC	2 cut(s)	260, 285
BspPI	GGATC	1 cut(s)	704
BspTNI	GGTCTC	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	471
BsrGI	TGTACA	1 cut(s)	1065
BssECI	CCNNGG	8 cut(s)	237, 243, 279, 631, 649, 863, 903, 1033
BssMI	GATC	2 cut(s)	696, 1120
BssSI	CACGAG	1 cut(s)	505
BssT1I	CCWWGG	2 cut(s)	243, 1033
Bst2BI	CACGAG	1 cut(s)	505
Bst2UI	CCWGG	3 cut(s)	281, 905, 1004
Bst4CI	ACNGT	5 cut(s)	297, 467, 650, 829, 1000
Bst6I	CTCTTC	2 cut(s)	125, 175
BstAUI	TGTACA	1 cut(s)	1065
BstC8I	GCNNGC	2 cut(s)	324, 1014
BstDEI	CTNAG	2 cut(s)	551, 936
BstDSI	CCRYGG	4 cut(s)	243, 631, 649, 1033
BstF5I	GGATG	1 cut(s)	696
BstFNI	CGCG	1 cut(s)	878
BstH2I	RGCGCY	1 cut(s)	722
BstHHI	GCGC	1 cut(s)	721
BstKTI	GATC	2 cut(s)	699, 1123
BstMAI	GTCTC	2 cut(s)	296, 949
BstMBI	GATC	2 cut(s)	696, 1120
BstMCI	CGRYCG	1 cut(s)	828
BstMWI	GCNNNNNNNGC	6 cut(s)	210, 487, 642, 865, 868, 1044
BstNI	CCWGG	3 cut(s)	281, 905, 1004
BstSCI	CCNGG	6 cut(s)	237, 279, 411, 862, 903, 1002
BstSLI	GKGCMC	1 cut(s)	455
BstUI	CGCG	1 cut(s)	878
BstV1I	GCAGC	2 cut(s)	846, 1003
BsuRI	GGCC	3 cut(s)	242, 278, 848
BtgI	CCRYGG	4 cut(s)	243, 631, 649, 1033
BtsCI	GGATG	1 cut(s)	696
BtsIMutI	CAGTG	1 cut(s)	996
Cac8I	GCNNGC	2 cut(s)	324, 1014
CfoI	GCGC	1 cut(s)	721
Cfr13I	GGNCC	3 cut(s)	259, 277, 283
CseI	GACGC	1 cut(s)	865
Csp6I	GTAC	2 cut(s)	463, 1066
CviAII	CATG	6 cut(s)	68, 244, 253, 343, 736, 1034
CviQI	GTAC	2 cut(s)	463, 1066
DdeI	CTNAG	2 cut(s)	551, 936
DpnI	GATC	2 cut(s)	698, 1122
DpnII	GATC	2 cut(s)	696, 1120
DraIII	CACNNNGTG	1 cut(s)	450
EaeI	YGGCCR	1 cut(s)	240
Eam1104I	CTCTTC	2 cut(s)	125, 175
EarI	CTCTTC	2 cut(s)	125, 175
Eco130I	CCWWGG	2 cut(s)	243, 1033
Eco147I	AGGCCT	1 cut(s)	848
Eco24I	GRGCYC	1 cut(s)	757
Eco31I	GGTCTC	1 cut(s)	296
Eco32I	GATATC	1 cut(s)	994
Eco47I	GGWCC	2 cut(s)	259, 283
EcoO109I	RGGNCCY	2 cut(s)	259, 283
EcoRII	CCWGG	3 cut(s)	279, 903, 1002
EcoRV	GATATC	1 cut(s)	994
EcoT14I	CCWWGG	2 cut(s)	243, 1033
EcoT38I	GRGCYC	1 cut(s)	757
ErhI	CCWWGG	2 cut(s)	243, 1033
FaeI	CATG	6 cut(s)	71, 247, 256, 346, 739, 1037
FaqI	GGGAC	4 cut(s)	269, 272, 398, 854
FatI	CATG	6 cut(s)	67, 243, 252, 342, 735, 1033
FauI	CCCGC	2 cut(s)	209, 249
FbaI	TGATCA	1 cut(s)	1120
Fnu4HI	GCNGC	5 cut(s)	488, 860, 869, 879, 1017
FokI	GGATG	1 cut(s)	703
FriOI	GRGCYC	1 cut(s)	757
Fsp4HI	GCNGC	5 cut(s)	488, 860, 869, 879, 1017
GlaI	GCGC	1 cut(s)	720
GluI	GCNGC	5 cut(s)	488, 860, 869, 879, 1017
GsaI	CCCAGC	1 cut(s)	213
HaeII	RGCGCY	1 cut(s)	722
HaeIII	GGCC	3 cut(s)	242, 278, 848
HapII	CCGG	5 cut(s)	187, 239, 413, 603, 863
HgaI	GACGC	1 cut(s)	865
HhaI	GCGC	1 cut(s)	721
Hin1II	CATG	6 cut(s)	71, 247, 256, 346, 739, 1037
Hin6I	GCGC	1 cut(s)	719
HinP1I	GCGC	1 cut(s)	719
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HinfI	GANTC	5 cut(s)	606, 616, 702, 794, 1139
HpaI	GTTAAC	1 cut(s)	565
HpaII	CCGG	5 cut(s)	187, 239, 413, 603, 863
HphI	GGTGA	5 cut(s)	91, 128, 401, 479, 620
Hpy166II	GTNNAC	3 cut(s)	453, 565, 1066
Hpy188I	TCNGA	4 cut(s)	301, 661, 701, 1054
Hpy188III	TCNNGA	3 cut(s)	39, 598, 853
Hpy8I	GTNNAC	3 cut(s)	453, 565, 1066
HpyAV	CCTTC	2 cut(s)	490, 859
HpyCH4III	ACNGT	5 cut(s)	297, 467, 650, 829, 1000
HpyCH4V	TGCA	6 cut(s)	228, 453, 583, 741, 985, 1111
HpyF10VI	GCNNNNNNNGC	6 cut(s)	210, 487, 642, 865, 868, 1044
HpyF3I	CTNAG	2 cut(s)	551, 936
Hsp92II	CATG	6 cut(s)	71, 247, 256, 346, 739, 1037
HspAI	GCGC	1 cut(s)	719
Ksp22I	TGATCA	1 cut(s)	1120
KspAI	GTTAAC	1 cut(s)	565
Kzo9I	GATC	2 cut(s)	696, 1120
LmnI	GCTCC	2 cut(s)	314, 481
Lsp1109I	GCAGC	2 cut(s)	846, 1003
LweI	GCATC	3 cut(s)	215, 408, 412
MaeIII	GTNAC	4 cut(s)	333, 442, 467, 820
MalI	GATC	2 cut(s)	698, 1122
MboI	GATC	2 cut(s)	696, 1120
MboII	GAAGA	4 cut(s)	77, 112, 162, 1168
MhlI	GDGCHC	3 cut(s)	63, 455, 757
MluCI	AATT	1 cut(s)	966
MlyI	GAGTC	3 cut(s)	625, 696, 1133
MmeI	TCCRAC	4 cut(s)	555, 767, 811, 1158
MroXI	GAANNNNTTC	1 cut(s)	500
MseI	TTAA	2 cut(s)	564, 1192
MslI	CAYNNNNRTG	2 cut(s)	66, 141
MspA1I	CMGCKG	1 cut(s)	490
MspI	CCGG	5 cut(s)	187, 239, 413, 603, 863
MspR9I	CCNGG	6 cut(s)	239, 281, 413, 864, 905, 1004
Mva1269I	GAATGC	2 cut(s)	196, 213
MvaI	CCWGG	3 cut(s)	281, 905, 1004
MvnI	CGCG	1 cut(s)	878
MwoI	GCNNNNNNNGC	6 cut(s)	210, 487, 642, 865, 868, 1044
NciI	CCSGG	3 cut(s)	239, 413, 864
NcoI	CCATGG	2 cut(s)	243, 1033
NdeII	GATC	2 cut(s)	696, 1120
NlaIII	CATG	6 cut(s)	71, 247, 256, 346, 739, 1037
NlaIV	GGNNCC	2 cut(s)	260, 285
NmuCI	GTSAC	2 cut(s)	442, 467
PceI	AGGCCT	1 cut(s)	848
PcsI	WCGNNNNNNNCGW	1 cut(s)	491
PctI	GAATGC	2 cut(s)	196, 213
PdmI	GAANNNNTTC	1 cut(s)	500
PfeI	GAWTC	2 cut(s)	606, 794
PfoI	TCCNGGA	1 cut(s)	1002
PkrI	GCNGC	5 cut(s)	489, 861, 870, 880, 1018
PleI	GAGTC	3 cut(s)	624, 696, 1133
PpsI	GAGTC	3 cut(s)	624, 696, 1133
PpuMI	RGGWCCY	2 cut(s)	259, 283
Psp5II	RGGWCCY	2 cut(s)	259, 283
Psp6I	CCWGG	3 cut(s)	279, 903, 1002
PspFI	CCCAGC	1 cut(s)	209
PspGI	CCWGG	3 cut(s)	279, 903, 1002
PspN4I	GGNNCC	2 cut(s)	260, 285
PspPI	GGNCC	3 cut(s)	259, 277, 283
PspPPI	RGGWCCY	2 cut(s)	259, 283
RsaI	GTAC	2 cut(s)	464, 1067
RsaNI	GTAC	2 cut(s)	463, 1066
RseI	CAYNNNNRTG	2 cut(s)	66, 141
SaqAI	TTAA	2 cut(s)	564, 1192
SatI	GCNGC	5 cut(s)	488, 860, 869, 879, 1017
Sau3AI	GATC	2 cut(s)	696, 1120
Sau96I	GGNCC	3 cut(s)	259, 277, 283
SchI	GAGTC	3 cut(s)	625, 696, 1133
ScrFI	CCNGG	6 cut(s)	239, 281, 413, 864, 905, 1004
SduI	GDGCHC	3 cut(s)	63, 455, 757
SetI	ASST	9 cut(s)	264, 285, 311, 328, 501, 711, 1074, 1137, 1171
SfaNI	GCATC	3 cut(s)	215, 408, 412
SinI	GGWCC	2 cut(s)	259, 283
SmiMI	CAYNNNNRTG	2 cut(s)	66, 141
SmlI	CTYRAG	2 cut(s)	704, 1073
SmoI	CTYRAG	2 cut(s)	704, 1073
Sse9I	AATT	1 cut(s)	966
SseBI	AGGCCT	1 cut(s)	848
SsiI	CCGC	9 cut(s)	202, 234, 256, 479, 488, 868, 878, 908, 1186
StuI	AGGCCT	1 cut(s)	848
StyD4I	CCNGG	6 cut(s)	237, 279, 411, 862, 903, 1002
StyI	CCWWGG	2 cut(s)	243, 1033
TaaI	ACNGT	5 cut(s)	297, 467, 650, 829, 1000
TaqI	TCGA	2 cut(s)	402, 1137
TasI	AATT	1 cut(s)	966
TatI	WGTACW	1 cut(s)	1065
TauI	GCSGC	3 cut(s)	490, 871, 881
TfiI	GAWTC	2 cut(s)	606, 794
Tru1I	TTAA	2 cut(s)	564, 1192
Tru9I	TTAA	2 cut(s)	564, 1192
TscAI	CASTG	1 cut(s)	1003
TseFI	GTSAC	2 cut(s)	442, 467
TseI	GCWGC	2 cut(s)	859, 1016
Tsp45I	GTSAC	2 cut(s)	442, 467
TspDTI	ATGAA	2 cut(s)	159, 1030
TspRI	CASTG	1 cut(s)	1003
VneI	GTGCAC	1 cut(s)	451
VpaK11BI	GGWCC	2 cut(s)	259, 283
XmnI	GAANNNNTTC	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.