Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0006185

Physical Location & Seq

Genomic Coordinates Forward (+)

4875648 .. 4877523

Gene Structure 1876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G044500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGAGTCCAACAATAATAGCCATCCTTCTGGTCTTTCTCACCTTCCTCTGCTCTCTCATCCACACCATACTCCAACCCATAATTGAAGACCATGATTTCTCATTCAAAATCGCTCCGTCTCTCAGCGACCCAACTCTGCTCATCTTCCAAGAGCCCCAGCAGCATCATGTACAGCAAGACCCACAGTCCTCCTCCTCCACCTCAACAACCCAATTTGGAGCCGCCGCCTCGAGAAGCCTCCAATTCTCCTGCCCAAACGGCTCGAGCCCAAGAGGCAGAAACCCAAGGCTAGTTCTAATTCTAGGGCGACTTCGAGGCTTGGAGTCCATGGTTCGGTGGCCAAGGCTCAGGGCCAGAAGGCTGAGGAGGCTGACGAAATGGCGCCGAAAGAGAAAGAGGGTCAAGAAAAGATTCTTTATTCTCAGTGCTCAACAAAAGGAAGGACGGAGCTGTTATCACTTTCTTTATTCTCAGTGCTCAACAAAATTACTTTATTATTTCTCTACAGTATTTAATAAACCAATTGGTGCAGGTATGCAGATTACAGGTGGAAAGCATTTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009705 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022840 GO:0022841 GO:0022842 GO:0022857 GO:0022890 GO:0030001 GO:0030322 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ion_trans_2

Protein Analysis

189

Amino Acids

21.6

Weight (kDa)

11.24

Isoelectric Point (pI)

73.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01840
fragaria_vesca	FvH4_1g26310 FvH4_1g26310
malus_domestica	MD09G1289500.v1.1 MD17G1284200.v1.1
prunus_persica	Prupe.3G003200_v2.0.a1 Prupe.3G003200_v2.0.a1 Prupe.5G044500_v2.0.a1
pyrus_communis	pycom09g19750 pycom14g08130 pycom17g28020
rosa_chinensis	RchiOBHm_Chr1g0333551 RchiOBHm_Chr3g0485981
rosa_laevigata	RLG00000023117 RLG00000035326
rosa_multiflora	Rmu_sc0003151.1_g000035 Rmu_sc0004032.1_g000015 Rmu_sc0009687.1_g000001 Rmu_sc0041532.1_g000001
rosa_roxburghii	Rroxscaffold_6G00396140
rosa_rugosa	Rorug03G0223100
rosa_samantha	Rh3AG272700 Rh3BG307400 Rh3CG306000 Rh3DG302300
rosa_wichuraiana	Rw3G024180 Rw6G027690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	521
AccB1I	GGYRCC	1 cut(s)	381
AciI	CCGC	2 cut(s)	222, 225
AcoI	YGGCCR	1 cut(s)	338
AcyI	GRCGYC	1 cut(s)	382
AfaI	GTAC	1 cut(s)	171
AfiI	CCNNNNNNNGG	1 cut(s)	333
AgsI	TTSAA	2 cut(s)	86, 106
AhdI	GACNNNNNGTC	1 cut(s)	184
AluBI	AGCT	1 cut(s)	450
AluI	AGCT	1 cut(s)	450
Alw21I	GWGCWC	2 cut(s)	430, 479
Alw26I	GTCTC	1 cut(s)	123
Ama87I	CYCGRG	2 cut(s)	229, 262
AoxI	GGCC	2 cut(s)	338, 351
ApeKI	GCWGC	1 cut(s)	160
Asp700I	GAANNNNTTC	1 cut(s)	410
AspLEI	GCGC	1 cut(s)	384
AspS9I	GGNCC	1 cut(s)	351
AsuHPI	GGTGA	1 cut(s)	31
AvaI	CYCGRG	2 cut(s)	229, 262
BalI	TGGCCA	1 cut(s)	340
BanI	GGYRCC	1 cut(s)	381
BanII	GRGCYC	2 cut(s)	156, 269
BbsI	GAAGAC	1 cut(s)	93
Bbv12I	GWGCWC	2 cut(s)	430, 479
BbvCI	CCTCAGC	1 cut(s)	362
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	1 cut(s)	29
BceAI	ACGGC	1 cut(s)	274
BcoDI	GTCTC	1 cut(s)	123
BfaI	CTAG	2 cut(s)	290, 302
BfmI	CTRYAG	1 cut(s)	504
BfoI	RGCGCY	1 cut(s)	385
BfuAI	ACCTGC	1 cut(s)	521
BglI	GCCNNNNNGGC	2 cut(s)	258, 273
BisI	GCNGC	3 cut(s)	161, 222, 225
BlsI	GCNGC	3 cut(s)	162, 223, 226
BmeRI	GACNNNNNGTC	1 cut(s)	184
BmeT110I	CYCGRG	2 cut(s)	229, 262
BmgT120I	GGNCC	1 cut(s)	351
BmiI	GGNNCC	2 cut(s)	220, 383
BmsI	GCATC	1 cut(s)	172
BpiI	GAAGAC	1 cut(s)	93
Bpu10I	CCTNAGC	2 cut(s)	347, 362
BsaHI	GRCGYC	1 cut(s)	382
BsaJI	CCNNGG	3 cut(s)	284, 327, 341
Bsc4I	CCNNNNNNNGG	1 cut(s)	333
BseDI	CCNNGG	3 cut(s)	284, 327, 341
BseGI	GGATG	2 cut(s)	21, 57
BseLI	CCNNNNNNNGG	1 cut(s)	333
BseMII	CTCAG	5 cut(s)	136, 353, 361, 436, 485
BseRI	GAGGAG	3 cut(s)	181, 184, 379
BseXI	GCAGC	1 cut(s)	172
BseYI	CCCAGC	1 cut(s)	156
BsgI	GTGCAG	1 cut(s)	549
BshFI	GGCC	2 cut(s)	340, 353
BshNI	GGYRCC	1 cut(s)	381
BsiHKAI	GWGCWC	2 cut(s)	430, 479
BsiHKCI	CYCGRG	2 cut(s)	229, 262
BslI	CCNNNNNNNGG	1 cut(s)	333
BsmAI	GTCTC	1 cut(s)	123
BsmBI	CGTCTC	1 cut(s)	123
BsnI	GGCC	2 cut(s)	340, 353
BsoBI	CYCGRG	2 cut(s)	229, 262
Bsp1286I	GDGCHC	4 cut(s)	156, 269, 430, 479
Bsp1407I	TGTACA	1 cut(s)	169
Bsp19I	CCATGG	1 cut(s)	327
BspACI	CCGC	2 cut(s)	222, 225
BspANI	GGCC	2 cut(s)	340, 353
BspCNI	CTCAG	5 cut(s)	135, 354, 360, 435, 484
BspLI	GGNNCC	2 cut(s)	220, 383
BspMI	ACCTGC	1 cut(s)	521
BspT107I	GGYRCC	1 cut(s)	381
BsrGI	TGTACA	1 cut(s)	169
BssECI	CCNNGG	3 cut(s)	284, 327, 341
BssNI	GRCGYC	1 cut(s)	382
BssT1I	CCWWGG	3 cut(s)	284, 327, 341
Bst4CI	ACNGT	2 cut(s)	186, 508
BstACI	GRCGYC	1 cut(s)	382
BstAUI	TGTACA	1 cut(s)	169
BstDEI	CTNAG	5 cut(s)	122, 347, 362, 422, 471
BstDSI	CCRYGG	1 cut(s)	327
BstF5I	GGATG	2 cut(s)	21, 57
BstH2I	RGCGCY	1 cut(s)	385
BstHHI	GCGC	1 cut(s)	384
BstMAI	GTCTC	1 cut(s)	123
BstMWI	GCNNNNNNNGC	4 cut(s)	160, 258, 273, 367
BstSFI	CTRYAG	1 cut(s)	504
BstV1I	GCAGC	1 cut(s)	172
BstV2I	GAAGAC	1 cut(s)	93
BstXI	CCANNNNNNTGG	1 cut(s)	28
BsuRI	GGCC	2 cut(s)	340, 353
BtgI	CCRYGG	1 cut(s)	327
BtsCI	GGATG	2 cut(s)	21, 57
BtsIMutI	CAGTG	2 cut(s)	430, 479
BveI	ACCTGC	1 cut(s)	521
CfoI	GCGC	1 cut(s)	384
Cfr13I	GGNCC	1 cut(s)	351
Csp6I	GTAC	1 cut(s)	170
CviAII	CATG	3 cut(s)	92, 167, 328
CviQI	GTAC	1 cut(s)	170
DdeI	CTNAG	5 cut(s)	122, 347, 362, 422, 471
DinI	GGCGCC	1 cut(s)	383
DriI	GACNNNNNGTC	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	338
Eam1105I	GACNNNNNGTC	1 cut(s)	184
Eco130I	CCWWGG	3 cut(s)	284, 327, 341
Eco24I	GRGCYC	2 cut(s)	156, 269
Eco88I	CYCGRG	2 cut(s)	229, 262
EcoT14I	CCWWGG	3 cut(s)	284, 327, 341
EcoT38I	GRGCYC	2 cut(s)	156, 269
EgeI	GGCGCC	1 cut(s)	383
EheI	GGCGCC	1 cut(s)	383
ErhI	CCWWGG	3 cut(s)	284, 327, 341
Esp3I	CGTCTC	1 cut(s)	123
FaeI	CATG	3 cut(s)	95, 170, 331
FaiI	YATR	6 cut(s)	68, 80, 93, 168, 329, 536
FatI	CATG	3 cut(s)	91, 166, 327
Fnu4HI	GCNGC	3 cut(s)	161, 222, 225
FokI	GGATG	2 cut(s)	8, 44
FriOI	GRGCYC	2 cut(s)	156, 269
Fsp4HI	GCNGC	3 cut(s)	161, 222, 225
FspBI	CTAG	2 cut(s)	290, 302
GlaI	GCGC	1 cut(s)	383
GluI	GCNGC	3 cut(s)	161, 222, 225
GsaI	CCCAGC	1 cut(s)	160
HaeII	RGCGCY	1 cut(s)	385
HaeIII	GGCC	2 cut(s)	340, 353
HhaI	GCGC	1 cut(s)	384
Hin1I	GRCGYC	1 cut(s)	382
Hin1II	CATG	3 cut(s)	95, 170, 331
Hin6I	GCGC	1 cut(s)	382
HinP1I	GCGC	1 cut(s)	382
HinfI	GANTC	3 cut(s)	4, 323, 411
HphI	GGTGA	1 cut(s)	31
Hpy188III	TCNNGA	2 cut(s)	231, 403
HpyAV	CCTTC	4 cut(s)	35, 52, 351, 434
HpyCH4III	ACNGT	2 cut(s)	186, 508
HpyCH4V	TGCA	2 cut(s)	530, 538
HpyF10VI	GCNNNNNNNGC	4 cut(s)	160, 258, 273, 367
HpyF3I	CTNAG	5 cut(s)	122, 347, 362, 422, 471
Hsp92I	GRCGYC	1 cut(s)	382
Hsp92II	CATG	3 cut(s)	95, 170, 331
HspAI	GCGC	1 cut(s)	382
KasI	GGCGCC	1 cut(s)	381
LmnI	GCTCC	3 cut(s)	118, 218, 447
LpnPI	CCDG	7 cut(s)	14, 170, 262, 334, 367, 516, 531
Lsp1109I	GCAGC	1 cut(s)	172
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	2 cut(s)	290, 302
MboII	GAAGA	2 cut(s)	98, 136
MfeI	CAATTG	1 cut(s)	522
MhlI	GDGCHC	4 cut(s)	156, 269, 430, 479
MlsI	TGGCCA	1 cut(s)	340
MluCI	AATT	6 cut(s)	81, 212, 242, 297, 485, 522
MluNI	TGGCCA	1 cut(s)	340
Mly113I	GGCGCC	1 cut(s)	382
MlyI	GAGTC	2 cut(s)	13, 332
MmeI	TCCRAC	2 cut(s)	32, 97
Mox20I	TGGCCA	1 cut(s)	340
MroXI	GAANNNNTTC	1 cut(s)	410
MscI	TGGCCA	1 cut(s)	340
MseI	TTAA	1 cut(s)	513
Msp20I	TGGCCA	1 cut(s)	340
MunI	CAATTG	1 cut(s)	522
MwoI	GCNNNNNNNGC	4 cut(s)	160, 258, 273, 367
NarI	GGCGCC	1 cut(s)	382
NcoI	CCATGG	1 cut(s)	327
NlaIII	CATG	3 cut(s)	95, 170, 331
NlaIV	GGNNCC	2 cut(s)	220, 383
PaeR7I	CTCGAG	2 cut(s)	229, 262
PdmI	GAANNNNTTC	1 cut(s)	410
PfeI	GAWTC	1 cut(s)	411
PkrI	GCNGC	3 cut(s)	162, 223, 226
PleI	GAGTC	2 cut(s)	12, 331
PluTI	GGCGCC	1 cut(s)	385
PpsI	GAGTC	2 cut(s)	12, 331
PspFI	CCCAGC	1 cut(s)	156
PspN4I	GGNNCC	2 cut(s)	220, 383
PspPI	GGNCC	1 cut(s)	351
PspXI	VCTCGAGB	1 cut(s)	262
RsaI	GTAC	1 cut(s)	171
RsaNI	GTAC	1 cut(s)	170
SaqAI	TTAA	1 cut(s)	513
SatI	GCNGC	3 cut(s)	161, 222, 225
Sau96I	GGNCC	1 cut(s)	351
SchI	GAGTC	2 cut(s)	13, 332
SduI	GDGCHC	4 cut(s)	156, 269, 430, 479
SetI	ASST	5 cut(s)	44, 203, 452, 535, 550
SfaNI	GCATC	1 cut(s)	172
SfcI	CTRYAG	1 cut(s)	504
SfoI	GGCGCC	1 cut(s)	383
Sfr274I	CTCGAG	2 cut(s)	229, 262
SlaI	CTCGAG	2 cut(s)	229, 262
SmlI	CTYRAG	2 cut(s)	229, 262
SmoI	CTYRAG	2 cut(s)	229, 262
Sse9I	AATT	6 cut(s)	81, 212, 242, 297, 485, 522
SsiI	CCGC	2 cut(s)	222, 225
SspDI	GGCGCC	1 cut(s)	381
SspMI	CTAG	2 cut(s)	290, 302
StyI	CCWWGG	3 cut(s)	284, 327, 341
TaaI	ACNGT	2 cut(s)	186, 508
TaqI	TCGA	3 cut(s)	230, 263, 313
TasI	AATT	6 cut(s)	81, 212, 242, 297, 485, 522
TatI	WGTACW	1 cut(s)	169
TauI	GCSGC	2 cut(s)	224, 227
TfiI	GAWTC	1 cut(s)	411
Tru1I	TTAA	1 cut(s)	513
Tru9I	TTAA	1 cut(s)	513
TscAI	CASTG	2 cut(s)	430, 479
TseI	GCWGC	1 cut(s)	160
TspGWI	ACGGA	2 cut(s)	105, 460
TspRI	CASTG	2 cut(s)	430, 479
XhoI	CTCGAG	2 cut(s)	229, 262
XmnI	GAANNNNTTC	1 cut(s)	410
XspI	CTAG	2 cut(s)	290, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.