Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004032.1

Orthogroup ID

OG0006185

Physical Location & Seq

Genomic Coordinates Forward (+)

79033 .. 79499

Gene Structure 467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004032.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atggctgtcatgcgtgacctgaagccaaagacagcccaggtccctaagccacagtccgataccagctccatcatcagacaagttgtgttgttacttgtcatgtatctttctctcggtgttgtaatatactctttcaacagggacaagttctctgaaacgccgctggctaaggtgttttcgtgtgtgtttgtgttggtgtggtttgggtttattgacatcttgctcagtggggtggtcaataatgtgttggacttgcaagagaacataatcttgaccggaatccaaattagtcatcaccaccaccacgactacgtctccaccatctactctgccgccggcatcatcgcggtctccgtcaagtacggcctcttcccgactcgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009705 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022840 GO:0022841 GO:0022842 GO:0022857 GO:0022890 GO:0030001 GO:0030322 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ion_trans_2

Protein Analysis

127

Amino Acids

14.21

Weight (kDa)

8.79

Isoelectric Point (pI)

28.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01840
fragaria_vesca	FvH4_1g26310 FvH4_1g26310
malus_domestica	MD09G1289500.v1.1 MD17G1284200.v1.1
prunus_persica	Prupe.3G003200_v2.0.a1 Prupe.3G003200_v2.0.a1 Prupe.5G044500_v2.0.a1
pyrus_communis	pycom09g19750 pycom14g08130 pycom17g28020
rosa_chinensis	RchiOBHm_Chr1g0333551 RchiOBHm_Chr3g0485981
rosa_laevigata	RLG00000023117 RLG00000035326
rosa_multiflora	Rmu_sc0003151.1_g000035 Rmu_sc0004032.1_g000015 Rmu_sc0009687.1_g000001 Rmu_sc0041532.1_g000001
rosa_roxburghii	Rroxscaffold_6G00396140
rosa_rugosa	Rorug03G0223100
rosa_samantha	Rh3AG272700 Rh3BG307400 Rh3CG306000 Rh3DG302300
rosa_wichuraiana	Rw3G024180 Rw6G027690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	347
AciI	CCGC	3 cut(s)	161, 333, 347
AcuI	CTGAAG	1 cut(s)	41
AfaI	GTAC	1 cut(s)	362
AgsI	TTSAA	1 cut(s)	136
AjnI	CCWGG	1 cut(s)	36
AluBI	AGCT	1 cut(s)	66
AluI	AGCT	1 cut(s)	66
Alw26I	GTCTC	2 cut(s)	319, 355
AoxI	GGCC	1 cut(s)	364
AspS9I	GGNCC	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	287
AvaII	GGWCC	1 cut(s)	40
BarI	GAAGNNNNNNTAC	1 cut(s)	353
BccI	CCATC	2 cut(s)	77, 329
BceAI	ACGGC	1 cut(s)	379
BciT130I	CCWGG	1 cut(s)	38
BcoDI	GTCTC	2 cut(s)	319, 355
BisI	GCNGC	2 cut(s)	161, 333
BlsI	GCNGC	2 cut(s)	162, 334
Bme1390I	CCNGG	1 cut(s)	38
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	38
BmsI	GCATC	1 cut(s)	348
Bpu10I	CCTNAGC	2 cut(s)	45, 168
BsaI	GGTCTC	1 cut(s)	355
BsaJI	CCNNGG	1 cut(s)	36
BsaWI	WCCGGW	1 cut(s)	275
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bse118I	RCCGGY	1 cut(s)	335
BseBI	CCWGG	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	36
BseMII	CTCAG	1 cut(s)	238
Bsh1236I	CGCG	1 cut(s)	347
BshFI	GGCC	1 cut(s)	366
BsiSI	CCGG	2 cut(s)	276, 336
BslFI	GGGAC	2 cut(s)	26, 155
BsmAI	GTCTC	2 cut(s)	319, 355
BsmBI	CGTCTC	1 cut(s)	319
BsmFI	GGGAC	2 cut(s)	26, 155
BsnI	GGCC	1 cut(s)	366
Bso31I	GGTCTC	1 cut(s)	355
BspACI	CCGC	3 cut(s)	161, 333, 347
BspANI	GGCC	1 cut(s)	366
BspCNI	CTCAG	1 cut(s)	237
BspFNI	CGCG	1 cut(s)	347
BspLI	GGNNCC	1 cut(s)	42
BspTNI	GGTCTC	1 cut(s)	355
BsrFI	RCCGGY	1 cut(s)	335
BssAI	RCCGGY	1 cut(s)	335
BssECI	CCNNGG	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	1 cut(s)	54
Bst6I	CTCTTC	1 cut(s)	374
BstC8I	GCNNGC	2 cut(s)	165, 337
BstDEI	CTNAG	3 cut(s)	45, 168, 224
BstFNI	CGCG	1 cut(s)	347
BstMAI	GTCTC	2 cut(s)	319, 355
BstNI	CCWGG	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	36
BstUI	CGCG	1 cut(s)	347
BsuRI	GGCC	1 cut(s)	366
BtgZI	GCGATG	1 cut(s)	328
BtsIMutI	CAGTG	1 cut(s)	232
Cac8I	GCNNGC	2 cut(s)	165, 337
Cfr10I	RCCGGY	1 cut(s)	335
Cfr13I	GGNCC	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	2 cut(s)	10, 100
CviJI	RGCY	7 cut(s)	5, 25, 35, 49, 66, 167, 366
CviKI_1	RGCY	7 cut(s)	5, 25, 35, 49, 66, 167, 366
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	3 cut(s)	45, 168, 224
Eam1104I	CTCTTC	1 cut(s)	374
EarI	CTCTTC	1 cut(s)	374
Eco31I	GGTCTC	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	41
EcoO109I	RGGNCCY	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	36
Esp3I	CGTCTC	1 cut(s)	319
FaeI	CATG	2 cut(s)	13, 103
FaiI	YATR	4 cut(s)	11, 101, 127, 266
FaqI	GGGAC	2 cut(s)	26, 155
FatI	CATG	2 cut(s)	9, 99
Fnu4HI	GCNGC	2 cut(s)	161, 333
Fsp4HI	GCNGC	2 cut(s)	161, 333
GluI	GCNGC	2 cut(s)	161, 333
HaeIII	GGCC	1 cut(s)	366
HapII	CCGG	2 cut(s)	276, 336
Hin1II	CATG	2 cut(s)	13, 103
HinfI	GANTC	2 cut(s)	279, 376
HpaII	CCGG	2 cut(s)	276, 336
HphI	GGTGA	1 cut(s)	287
Hpy188I	TCNGA	3 cut(s)	58, 77, 154
Hpy188III	TCNNGA	2 cut(s)	271, 373
HpyCH4III	ACNGT	1 cut(s)	54
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	1 cut(s)	256
HpyF3I	CTNAG	3 cut(s)	45, 168, 224
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	2 cut(s)	13, 103
KroI	GCCGGC	1 cut(s)	335
KroNI	GCCGGC	1 cut(s)	337
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	8 cut(s)	23, 32, 50, 76, 124, 149, 289, 349
LweI	GCATC	1 cut(s)	348
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	2 cut(s)	14, 90
MboII	GAAGA	1 cut(s)	361
MluCI	AATT	1 cut(s)	285
MlyI	GAGTC	1 cut(s)	370
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	1 cut(s)	377
MroNI	GCCGGC	1 cut(s)	335
MspA1I	CMGCKG	1 cut(s)	163
MspI	CCGG	2 cut(s)	276, 336
MspR9I	CCNGG	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	38
MvnI	CGCG	1 cut(s)	347
NaeI	GCCGGC	1 cut(s)	337
NgoMIV	GCCGGC	1 cut(s)	335
NlaIII	CATG	2 cut(s)	13, 103
NlaIV	GGNNCC	1 cut(s)	42
NmuCI	GTSAC	1 cut(s)	14
PcsI	WCGNNNNNNNCGW	1 cut(s)	351
PdiI	GCCGGC	1 cut(s)	337
PfeI	GAWTC	1 cut(s)	279
PflFI	GACNNNGTC	1 cut(s)	311
PkrI	GCNGC	2 cut(s)	162, 334
PleI	GAGTC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	370
PpuMI	RGGWCCY	1 cut(s)	40
Psp5II	RGGWCCY	1 cut(s)	40
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	42
PspPI	GGNCC	1 cut(s)	40
PspPPI	RGGWCCY	1 cut(s)	40
PsyI	GACNNNGTC	1 cut(s)	311
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SatI	GCNGC	2 cut(s)	161, 333
Sau96I	GGNCC	1 cut(s)	40
SchI	GAGTC	1 cut(s)	370
ScrFI	CCNGG	1 cut(s)	38
SetI	ASST	5 cut(s)	21, 42, 68, 174, 315
SfaNI	GCATC	1 cut(s)	348
SinI	GGWCC	1 cut(s)	40
Sse9I	AATT	1 cut(s)	285
SsiI	CCGC	3 cut(s)	161, 333, 347
StyD4I	CCNGG	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	54
TaiI	ACGT	1 cut(s)	315
TasI	AATT	1 cut(s)	285
TauI	GCSGC	2 cut(s)	163, 335
TfiI	GAWTC	1 cut(s)	279
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	1 cut(s)	14
Tsp45I	GTSAC	1 cut(s)	14
TspGWI	ACGGA	1 cut(s)	343
TspRI	CASTG	1 cut(s)	232
Tth111I	GACNNNGTC	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.