Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009687.1

Orthogroup ID

OG0006185

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1204

Gene Structure 1204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009687.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 637 bp

ggtcaattatgtgctggacttgcaagagcacataatcttgaccggaatccaaatgagtcatcaccaccaccaccacggcagtaaaaatcaccatggattttcggactacattgttgatgtggccaaggggaggatgaggatcagactcaaggtgggtctggcgcttggtgtggtggtgatgtgcattggcattggggctctggttttgtgttttttggaggatttggattgggttgattccatttatttgtctgttatgtcggttacaactgttgggtatggggacaaggccttcaagtcgctgccggggcggcttttcgcggcggtttggcttctgttttcgacactggcggtggcgagagcctttttgtatttggcagaggcgagggtggataagagacacaggaaaattgtcaagtgggtattgcatagggagatcactgtccaggatttgcttgctgctgacatcaataaccatggcttcatcagcaaatcagagtatattgtctacaagctcaaagagatgggaaagatagatgagaaagatataatgcaaatatgcgatcagttcagtaagcttgattcaaaccactctgggaagataacactgcccgatttgttggagaatcgcttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009705 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022840 GO:0022841 GO:0022842 GO:0022857 GO:0022890 GO:0030001 GO:0030322 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ion_trans_2

Protein Analysis

211

Amino Acids

24.0

Weight (kDa)

8.4

Isoelectric Point (pI)

12.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01840
fragaria_vesca	FvH4_1g26310 FvH4_1g26310
malus_domestica	MD09G1289500.v1.1 MD17G1284200.v1.1
prunus_persica	Prupe.3G003200_v2.0.a1 Prupe.3G003200_v2.0.a1 Prupe.5G044500_v2.0.a1
pyrus_communis	pycom09g19750 pycom14g08130 pycom17g28020
rosa_chinensis	RchiOBHm_Chr1g0333551 RchiOBHm_Chr3g0485981
rosa_laevigata	RLG00000023117 RLG00000035326
rosa_multiflora	Rmu_sc0003151.1_g000035 Rmu_sc0004032.1_g000015 Rmu_sc0009687.1_g000001 Rmu_sc0041532.1_g000001
rosa_roxburghii	Rroxscaffold_6G00396140
rosa_rugosa	Rorug03G0223100
rosa_samantha	Rh3AG272700 Rh3BG307400 Rh3CG306000 Rh3DG302300
rosa_wichuraiana	Rw3G024180 Rw6G027690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	508
AccII	CGCG	1 cut(s)	321
AciI	CCGC	4 cut(s)	311, 321, 324, 351
AclWI	GGATC	1 cut(s)	147
AcoI	YGGCCR	1 cut(s)	121
AfiI	CCNNNNNNNGG	1 cut(s)	130
AgsI	TTSAA	2 cut(s)	296, 586
AjnI	CCWGG	1 cut(s)	445
AluBI	AGCT	2 cut(s)	515, 578
AluI	AGCT	2 cut(s)	515, 578
Alw21I	GWGCWC	1 cut(s)	31
Alw26I	GTCTC	1 cut(s)	392
AlwI	GGATC	1 cut(s)	147
AoxI	GGCC	2 cut(s)	121, 289
ApeKI	GCWGC	2 cut(s)	302, 459
Asp700I	GAANNNNTTC	1 cut(s)	630
AspLEI	GCGC	1 cut(s)	164
AsuC2I	CCSGG	1 cut(s)	307
AsuHPI	GGTGA	3 cut(s)	54, 81, 188
BalI	TGGCCA	1 cut(s)	123
BanII	GRGCYC	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	31
BbvI	GCAGC	2 cut(s)	289, 446
BccI	CCATC	1 cut(s)	518
BceAI	ACGGC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	447
BcnI	CCSGG	1 cut(s)	307
BcoDI	GTCTC	1 cut(s)	392
BfoI	RGCGCY	1 cut(s)	165
BglI	GCCNNNNNGGC	1 cut(s)	311
BisI	GCNGC	4 cut(s)	303, 312, 322, 460
BlsI	GCNGC	4 cut(s)	304, 313, 323, 461
Bme1390I	CCNGG	2 cut(s)	307, 447
BmrFI	CCNGG	2 cut(s)	307, 447
BpuEI	CTTGAG	1 cut(s)	132
BpuMI	CCSGG	1 cut(s)	307
BsaBI	GATNNNNATC	1 cut(s)	138
BsaJI	CCNNGG	5 cut(s)	74, 92, 124, 306, 476
BsaWI	WCCGGW	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
Bse1I	ACTGG	1 cut(s)	352
Bse8I	GATNNNNATC	1 cut(s)	138
BseBI	CCWGG	1 cut(s)	447
BseDI	CCNNGG	5 cut(s)	74, 92, 124, 306, 476
BseGI	GGATG	1 cut(s)	139
BseJI	GATNNNNATC	1 cut(s)	138
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseNI	ACTGG	1 cut(s)	352
BseXI	GCAGC	2 cut(s)	289, 446
Bsh1236I	CGCG	1 cut(s)	321
BshFI	GGCC	2 cut(s)	123, 291
BsiHKAI	GWGCWC	1 cut(s)	31
BsiSI	CCGG	2 cut(s)	43, 306
BslFI	GGGAC	1 cut(s)	297
BslI	CCNNNNNNNGG	1 cut(s)	130
BsmAI	GTCTC	1 cut(s)	392
BsmFI	GGGAC	1 cut(s)	297
BsnI	GGCC	2 cut(s)	123, 291
Bsp1286I	GDGCHC	2 cut(s)	31, 200
Bsp143I	GATC	3 cut(s)	139, 436, 563
Bsp19I	CCATGG	2 cut(s)	92, 476
BspACI	CCGC	4 cut(s)	311, 321, 324, 351
BspANI	GGCC	2 cut(s)	123, 291
BspFNI	CGCG	1 cut(s)	321
BspPI	GGATC	1 cut(s)	147
BsrI	ACTGG	1 cut(s)	352
BssECI	CCNNGG	5 cut(s)	74, 92, 124, 306, 476
BssMI	GATC	3 cut(s)	139, 436, 563
BssT1I	CCWWGG	3 cut(s)	92, 124, 476
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	2 cut(s)	272, 443
BstC8I	GCNNGC	1 cut(s)	457
BstDSI	CCRYGG	3 cut(s)	74, 92, 476
BstF5I	GGATG	1 cut(s)	139
BstFNI	CGCG	1 cut(s)	321
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	3 cut(s)	142, 439, 566
BstMAI	GTCTC	1 cut(s)	392
BstMBI	GATC	3 cut(s)	139, 436, 563
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 308, 311, 487
BstNI	CCWGG	1 cut(s)	447
BstSCI	CCNGG	2 cut(s)	305, 445
BstUI	CGCG	1 cut(s)	321
BstV1I	GCAGC	2 cut(s)	289, 446
BsuRI	GGCC	2 cut(s)	123, 291
BtgI	CCRYGG	3 cut(s)	74, 92, 476
BtsCI	GGATG	1 cut(s)	139
BtsI	GCAGTG	1 cut(s)	606
BtsIMutI	CAGTG	3 cut(s)	345, 439, 606
Cac8I	GCNNGC	1 cut(s)	457
CfoI	GCGC	1 cut(s)	164
CviAII	CATG	2 cut(s)	93, 477
CviJI	RGCY	9 cut(s)	123, 198, 291, 314, 332, 363, 481, 515, 578
CviKI_1	RGCY	9 cut(s)	123, 198, 291, 314, 332, 363, 481, 515, 578
DpnI	GATC	3 cut(s)	141, 438, 565
DpnII	GATC	3 cut(s)	139, 436, 563
EaeI	YGGCCR	1 cut(s)	121
Eco130I	CCWWGG	3 cut(s)	92, 124, 476
Eco147I	AGGCCT	1 cut(s)	291
Eco24I	GRGCYC	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	445
EcoT14I	CCWWGG	3 cut(s)	92, 124, 476
EcoT38I	GRGCYC	1 cut(s)	200
ErhI	CCWWGG	3 cut(s)	92, 124, 476
FaeI	CATG	2 cut(s)	96, 480
FaqI	GGGAC	1 cut(s)	297
FatI	CATG	2 cut(s)	92, 476
FblI	GTMKAC	1 cut(s)	508
Fnu4HI	GCNGC	4 cut(s)	303, 312, 322, 460
FokI	GGATG	1 cut(s)	146
FriOI	GRGCYC	1 cut(s)	200
Fsp4HI	GCNGC	4 cut(s)	303, 312, 322, 460
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	4 cut(s)	303, 312, 322, 460
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	2 cut(s)	123, 291
HapII	CCGG	2 cut(s)	43, 306
HhaI	GCGC	1 cut(s)	164
Hin1II	CATG	2 cut(s)	96, 480
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HindIII	AAGCTT	1 cut(s)	576
HinfI	GANTC	6 cut(s)	46, 56, 145, 237, 582, 626
HpaII	CCGG	2 cut(s)	43, 306
HphI	GGTGA	3 cut(s)	54, 81, 188
Hpy166II	GTNNAC	1 cut(s)	509
Hpy188I	TCNGA	3 cut(s)	104, 144, 497
Hpy188III	TCNNGA	1 cut(s)	38
Hpy8I	GTNNAC	1 cut(s)	509
HpyAV	CCTTC	1 cut(s)	302
HpyCH4III	ACNGT	2 cut(s)	272, 443
HpyCH4V	TGCA	4 cut(s)	23, 184, 428, 554
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 308, 311, 487
Hsp92II	CATG	2 cut(s)	96, 480
HspAI	GCGC	1 cut(s)	162
Kzo9I	GATC	3 cut(s)	139, 436, 563
LpnPI	CCDG	9 cut(s)	56, 144, 186, 319, 333, 389, 432, 459, 580
Lsp1109I	GCAGC	2 cut(s)	289, 446
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	3 cut(s)	141, 438, 565
MboI	GATC	3 cut(s)	139, 436, 563
MboII	GAAGA	1 cut(s)	611
MhlI	GDGCHC	2 cut(s)	31, 200
MlsI	TGGCCA	1 cut(s)	123
MluCI	AATT	2 cut(s)	5, 409
MluNI	TGGCCA	1 cut(s)	123
MlyI	GAGTC	2 cut(s)	65, 139
MmeI	TCCRAC	1 cut(s)	601
MnlI	CCTC	5 cut(s)	124, 130, 212, 374, 379
Mox20I	TGGCCA	1 cut(s)	123
MroXI	GAANNNNTTC	1 cut(s)	630
MscI	TGGCCA	1 cut(s)	123
Msp20I	TGGCCA	1 cut(s)	123
MspI	CCGG	2 cut(s)	43, 306
MspR9I	CCNGG	2 cut(s)	307, 447
MvaI	CCWGG	1 cut(s)	447
MvnI	CGCG	1 cut(s)	321
MwoI	GCNNNNNNNGC	4 cut(s)	20, 308, 311, 487
NciI	CCSGG	1 cut(s)	307
NcoI	CCATGG	2 cut(s)	92, 476
NdeII	GATC	3 cut(s)	139, 436, 563
NlaIII	CATG	2 cut(s)	96, 480
PceI	AGGCCT	1 cut(s)	291
PdmI	GAANNNNTTC	1 cut(s)	630
PfeI	GAWTC	4 cut(s)	46, 237, 582, 626
PfoI	TCCNGGA	1 cut(s)	445
PkrI	GCNGC	4 cut(s)	304, 313, 323, 461
PleI	GAGTC	2 cut(s)	64, 139
PpsI	GAGTC	2 cut(s)	64, 139
Psp6I	CCWGG	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	445
SatI	GCNGC	4 cut(s)	303, 312, 322, 460
Sau3AI	GATC	3 cut(s)	139, 436, 563
SchI	GAGTC	2 cut(s)	65, 139
ScrFI	CCNGG	2 cut(s)	307, 447
SduI	GDGCHC	2 cut(s)	31, 200
SetI	ASST	3 cut(s)	154, 517, 580
SmlI	CTYRAG	1 cut(s)	147
SmoI	CTYRAG	1 cut(s)	147
Sse9I	AATT	2 cut(s)	5, 409
SseBI	AGGCCT	1 cut(s)	291
SsiI	CCGC	4 cut(s)	311, 321, 324, 351
StuI	AGGCCT	1 cut(s)	291
StyD4I	CCNGG	2 cut(s)	305, 445
StyI	CCWWGG	3 cut(s)	92, 124, 476
TaaI	ACNGT	2 cut(s)	272, 443
TaqI	TCGA	1 cut(s)	342
TasI	AATT	2 cut(s)	5, 409
TauI	GCSGC	2 cut(s)	314, 324
TfiI	GAWTC	4 cut(s)	46, 237, 582, 626
TscAI	CASTG	3 cut(s)	352, 446, 613
TseI	GCWGC	2 cut(s)	302, 459
TspDTI	ATGAA	1 cut(s)	473
TspRI	CASTG	3 cut(s)	352, 446, 613
XmiI	GTMKAC	1 cut(s)	508
XmnI	GAANNNNTTC	1 cut(s)	630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.