Rw3G024180

Potassium channel

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Forward (+)
30938477 .. 30940793
2317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G024180.1

Sequence Viewer

Length: 1206 bp
ATGGAGAATGAGCCCTTTCTCTCCTCCCCACCCCCACTTGAACCCATCATTGAGGACCCTCATGATTTCTCTTTCAATCTCCCTCCTCCCCTCACCGACCCAATTGTGCTTCTCGTACAAGAACCCCCACACCAACATGATGAAATACACCAAGACCCACATCCCTCTTCATCGTCTTCCTCATCTTCCGGGCCCCGGAATGCCCCGACCCGCAAACCCACCATTCTCCAGCGATGCAAGACCGCCCCGGCCATGGCTGTCATGCGAGACCTGAAGCCAAAGACGGCCCAGGTCCCCAAGCCACAGTCCGAGACCAGCTCCATCATCAGACAAGCTGTGTTGTTACTTGTCATGTATCTCTCTCTCGGTGTTGTAATATACTCTTTCAACAGGGACAAGTTCTCCGGTTCGGAAACCCACCCCGTGGTTGACGCCCTCTACTTTTGTATAGTCACCATGTGCACGATTGGGTACGGCGACATTGCTCCGGAAACGCCGCTGGCTAAGCTGTTTTCGTGTGTGTTTGTGTTGGTGGGGTTTGGGTTTATTGACATCTTGCTTAGTGGGGTGGTCAATTATGTGCTGGACTTGCAAGAGCACATAATCTTGACCGGAATCCAAATGAGTCATCACCACCACCACCACGGCAGTAAAAGCCACCATGGATTTTCGGACTACATTGTTGATGTGGCCAAGGGGAGGATGAGGATCAGACTCAAGGTGGGTCTGGCGCTTGGTGTGGTGCTGATGTGCATTGGCATGGGGGCTCTGGTTTTGTGTTTTTTGGAGGATTTGGATTGGGTTGATTCCATTTATTTGTCTGTTATGTCGGTTACAACTGTTGGGTATGGGGACAAGGCCTTCAAGTCGCTGCCGGGGCGGCTTTTCGCGGCGGTTTGGCTTCTGTTTTCGACACTGGCGGTGGCGAGAGCCTTTTTGTATTTGGCAGAGGCGAGGGTGGATAAGAGACACAGGAAAATTGTCAAGTGGGTATTGCATAGGGAGATCACTGTCCAGGATTTGCTTGCTGCTGACATCAATAACCATGGCTTCATCAGCAAATCAGAGTATATTGTTTACAAGCTCAAGGAGATGGGAAAGATAGATGAGAAAGATATAATGCAAATCTGCGATCAGTTCAGTAAGCTTGATTCAAACCACTCTGGGAAGATAACACTGCCTGATTTGTTGGAGAATCGCTTCTAA

Protein Analysis

401

Amino Acids

44.8

Weight (kDa)

6.54

Isoelectric Point (pI)

32.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 113 - 193 5.4e-07 Ion transport protein
Ion_trans_2 PF07885 115 - 194 5.5e-17 Ion channel
Ion_trans_2 PF07885 249 - 317 6.8e-12 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 424
AccII CGCG 1 cut(s) 890
AccIII TCCGGA 1 cut(s) 487
AciI CCGC 7 cut(s) 211, 243, 497, 880, 890, 893, 920
AclWI GGATC 1 cut(s) 716
AcoI YGGCCR 2 cut(s) 249, 690
AcuI CTGAAG 1 cut(s) 293
AcyI GRCGYC 1 cut(s) 432
AdeI CACNNNGTG 2 cut(s) 424, 459
AfaI GTAC 2 cut(s) 117, 473
AfiI CCNNNNNNNGG 4 cut(s) 195, 253, 424, 699
AgsI TTSAA 5 cut(s) 41, 76, 388, 865, 1155
AjnI CCWGG 2 cut(s) 288, 1014
AluBI AGCT 5 cut(s) 318, 335, 508, 1084, 1147
AluI AGCT 5 cut(s) 318, 335, 508, 1084, 1147
Alw21I GWGCWC 2 cut(s) 464, 600
Alw26I GTCTC 3 cut(s) 261, 305, 961
Alw44I GTGCAC 1 cut(s) 460
AlwI GGATC 1 cut(s) 716
Aor13HI TCCGGA 1 cut(s) 487
AoxI GGCC 5 cut(s) 191, 249, 285, 690, 858
ApaI GGGCCC 1 cut(s) 195
ApaLI GTGCAC 1 cut(s) 460
ApeKI GCWGC 2 cut(s) 871, 1028
Asp700I GAANNNNTTC 1 cut(s) 1199
AspLEI GCGC 1 cut(s) 733
AspS9I GGNCC 5 cut(s) 55, 191, 192, 286, 292
AsuC2I CCSGG 4 cut(s) 190, 196, 248, 876
AsuHPI GGTGA 3 cut(s) 85, 445, 623
AvaII GGWCC 2 cut(s) 55, 292
BaeGI GKGCMC 2 cut(s) 195, 464
BalI TGGCCA 1 cut(s) 692
BanII GRGCYC 3 cut(s) 15, 195, 769
BbsI GAAGAC 1 cut(s) 168
Bbv12I GWGCWC 2 cut(s) 464, 600
BbvI GCAGC 2 cut(s) 858, 1015
BccI CCATC 3 cut(s) 53, 329, 1087
BceAI ACGGC 3 cut(s) 300, 490, 661
BciT130I CCWGG 2 cut(s) 290, 1016
BcnI CCSGG 4 cut(s) 190, 196, 248, 876
BcoDI GTCTC 3 cut(s) 261, 305, 961
BfoI RGCGCY 1 cut(s) 734
BglI GCCNNNNNGGC 1 cut(s) 880
BisI GCNGC 5 cut(s) 497, 872, 881, 891, 1029
BlpI GCTNAGC 1 cut(s) 504
BlsI GCNGC 5 cut(s) 498, 873, 882, 892, 1030
Bme1390I CCNGG 6 cut(s) 190, 196, 248, 290, 876, 1016
Bme18I GGWCC 2 cut(s) 55, 292
BmgT120I GGNCC 5 cut(s) 55, 191, 192, 286, 292
BmiI GGNNCC 4 cut(s) 57, 193, 194, 294
BmrFI CCNGG 6 cut(s) 190, 196, 248, 290, 876, 1016
BmsI GCATC 1 cut(s) 224
BpiI GAAGAC 1 cut(s) 168
BplI GAGNNNNNCTC 2 cut(s) 302, 334
BpmI CTGGAG 1 cut(s) 212
Bpu1102I GCTNAGC 1 cut(s) 504
BpuEI CTTGAG 2 cut(s) 701, 1070
BpuMI CCSGG 4 cut(s) 190, 196, 248, 876
BsaBI GATNNNNATC 1 cut(s) 707
BsaHI GRCGYC 1 cut(s) 432
BsaI GGTCTC 2 cut(s) 261, 305
BsaWI WCCGGW 3 cut(s) 404, 487, 611
BsaXI ACNNNNNCTCC 2 cut(s) 386, 416
Bsc4I CCNNNNNNNGG 4 cut(s) 195, 253, 424, 699
Bse1I ACTGG 1 cut(s) 921
Bse3DI GCAATG 1 cut(s) 480
Bse8I GATNNNNATC 1 cut(s) 707
BseAI TCCGGA 1 cut(s) 487
BseBI CCWGG 2 cut(s) 290, 1016
BseGI GGATG 2 cut(s) 160, 708
BseJI GATNNNNATC 1 cut(s) 707
BseLI CCNNNNNNNGG 4 cut(s) 195, 253, 424, 699
BseMI GCAATG 1 cut(s) 480
BseNI ACTGG 1 cut(s) 921
BseRI GAGGAG 2 cut(s) 13, 75
BseSI GKGCMC 2 cut(s) 195, 464
BseXI GCAGC 2 cut(s) 858, 1015
Bsh1236I CGCG 1 cut(s) 890
BshFI GGCC 5 cut(s) 193, 251, 287, 692, 860
BsiHKAI GWGCWC 2 cut(s) 464, 600
BsiSI CCGG 7 cut(s) 189, 196, 248, 405, 488, 612, 875
BslFI GGGAC 3 cut(s) 278, 407, 866
BslI CCNNNNNNNGG 4 cut(s) 195, 253, 424, 699
BsmAI GTCTC 3 cut(s) 261, 305, 961
BsmFI GGGAC 3 cut(s) 278, 407, 866
BsmI GAATGC 1 cut(s) 205
BsnI GGCC 5 cut(s) 193, 251, 287, 692, 860
Bso31I GGTCTC 2 cut(s) 261, 305
Bsp120I GGGCCC 1 cut(s) 191
Bsp1286I GDGCHC 5 cut(s) 15, 195, 464, 600, 769
Bsp13I TCCGGA 1 cut(s) 487
Bsp143I GATC 3 cut(s) 708, 1005, 1132
Bsp1720I GCTNAGC 1 cut(s) 504
Bsp19I CCATGG 3 cut(s) 252, 661, 1045
BspACI CCGC 7 cut(s) 211, 243, 497, 880, 890, 893, 920
BspANI GGCC 5 cut(s) 193, 251, 287, 692, 860
BspEI TCCGGA 1 cut(s) 487
BspFNI CGCG 1 cut(s) 890
BspHI TCATGA 1 cut(s) 61
BspLI GGNNCC 4 cut(s) 57, 193, 194, 294
BspPI GGATC 1 cut(s) 716
BspTNI GGTCTC 2 cut(s) 261, 305
BsrDI GCAATG 1 cut(s) 480
BsrI ACTGG 1 cut(s) 921
BssMI GATC 3 cut(s) 708, 1005, 1132
BssNI GRCGYC 1 cut(s) 432
BssT1I CCWWGG 4 cut(s) 252, 661, 693, 1045
Bst2UI CCWGG 2 cut(s) 290, 1016
Bst4CI ACNGT 3 cut(s) 306, 841, 1012
Bst6I CTCTTC 1 cut(s) 172
BstACI GRCGYC 1 cut(s) 432
BstC8I GCNNGC 2 cut(s) 501, 1026
BstDEI CTNAG 2 cut(s) 504, 560
BstDSI CCRYGG 5 cut(s) 252, 423, 643, 661, 1045
BstF5I GGATG 2 cut(s) 160, 708
BstFNI CGCG 1 cut(s) 890
BstH2I RGCGCY 1 cut(s) 734
BstHHI GCGC 1 cut(s) 733
BstKTI GATC 3 cut(s) 711, 1008, 1135
BstMAI GTCTC 3 cut(s) 261, 305, 961
BstMBI GATC 3 cut(s) 708, 1005, 1132
BstMWI GCNNNNNNNGC 6 cut(s) 505, 589, 654, 877, 880, 1056
BstNI CCWGG 2 cut(s) 290, 1016
BstSCI CCNGG 6 cut(s) 188, 194, 246, 288, 874, 1014
BstSLI GKGCMC 2 cut(s) 195, 464
BstUI CGCG 1 cut(s) 890
BstV1I GCAGC 2 cut(s) 858, 1015
BstV2I GAAGAC 1 cut(s) 168
BsuRI GGCC 5 cut(s) 193, 251, 287, 692, 860
BtgI CCRYGG 5 cut(s) 252, 423, 643, 661, 1045
BtgZI GCGATG 1 cut(s) 247
BtsCI GGATG 2 cut(s) 160, 708
BtsI GCAGTG 1 cut(s) 1175
BtsIMutI CAGTG 3 cut(s) 914, 1008, 1175
Cac8I GCNNGC 2 cut(s) 501, 1026
CciI TCATGA 1 cut(s) 61
CfoI GCGC 1 cut(s) 733
Cfr13I GGNCC 5 cut(s) 55, 191, 192, 286, 292
CseI GACGC 1 cut(s) 440
Csp6I GTAC 2 cut(s) 116, 472
CviAII CATG 9 cut(s) 62, 137, 253, 262, 352, 457, 662, 760, 1046
CviQI GTAC 2 cut(s) 116, 472
DdeI CTNAG 2 cut(s) 504, 560
DpnI GATC 3 cut(s) 710, 1007, 1134
DpnII GATC 3 cut(s) 708, 1005, 1132
DraIII CACNNNGTG 2 cut(s) 424, 459
EaeI YGGCCR 2 cut(s) 249, 690
Eam1104I CTCTTC 1 cut(s) 172
EarI CTCTTC 1 cut(s) 172
Eco130I CCWWGG 4 cut(s) 252, 661, 693, 1045
Eco147I AGGCCT 1 cut(s) 860
Eco24I GRGCYC 3 cut(s) 15, 195, 769
Eco31I GGTCTC 2 cut(s) 261, 305
Eco47I GGWCC 2 cut(s) 55, 292
Eco57I CTGAAG 1 cut(s) 293
EcoO109I RGGNCCY 3 cut(s) 55, 192, 292
EcoRII CCWGG 2 cut(s) 288, 1014
EcoT14I CCWWGG 4 cut(s) 252, 661, 693, 1045
EcoT38I GRGCYC 3 cut(s) 15, 195, 769
ErhI CCWWGG 4 cut(s) 252, 661, 693, 1045
FaeI CATG 9 cut(s) 65, 140, 256, 265, 355, 460, 665, 763, 1049
FaqI GGGAC 3 cut(s) 278, 407, 866
FatI CATG 9 cut(s) 61, 136, 252, 261, 351, 456, 661, 759, 1045
FauI CCCGC 1 cut(s) 218
Fnu4HI GCNGC 5 cut(s) 497, 872, 881, 891, 1029
FokI GGATG 2 cut(s) 147, 715
FriOI GRGCYC 3 cut(s) 15, 195, 769
Fsp4HI GCNGC 5 cut(s) 497, 872, 881, 891, 1029
GlaI GCGC 1 cut(s) 732
GluI GCNGC 5 cut(s) 497, 872, 881, 891, 1029
GsuI CTGGAG 1 cut(s) 212
HaeII RGCGCY 1 cut(s) 734
HaeIII GGCC 5 cut(s) 193, 251, 287, 692, 860
HapII CCGG 7 cut(s) 189, 196, 248, 405, 488, 612, 875
HgaI GACGC 1 cut(s) 440
HhaI GCGC 1 cut(s) 733
Hin1I GRCGYC 1 cut(s) 432
Hin1II CATG 9 cut(s) 65, 140, 256, 265, 355, 460, 665, 763, 1049
Hin6I GCGC 1 cut(s) 731
HinP1I GCGC 1 cut(s) 731
HincII GTYRAC 1 cut(s) 430
HindII GTYRAC 1 cut(s) 430
HindIII AAGCTT 1 cut(s) 1145
HinfI GANTC 6 cut(s) 615, 625, 714, 806, 1151, 1195
HpaII CCGG 7 cut(s) 189, 196, 248, 405, 488, 612, 875
HphI GGTGA 3 cut(s) 85, 445, 623
Hpy166II GTNNAC 3 cut(s) 430, 462, 1078
Hpy188I TCNGA 6 cut(s) 310, 329, 412, 673, 713, 1066
Hpy188III TCNNGA 3 cut(s) 62, 488, 607
Hpy8I GTNNAC 3 cut(s) 430, 462, 1078
HpyAV CCTTC 1 cut(s) 871
HpyCH4III ACNGT 3 cut(s) 306, 841, 1012
HpyCH4V TGCA 6 cut(s) 237, 462, 592, 753, 997, 1123
HpyF10VI GCNNNNNNNGC 6 cut(s) 505, 589, 654, 877, 880, 1056
HpyF3I CTNAG 2 cut(s) 504, 560
Hsp92I GRCGYC 1 cut(s) 432
Hsp92II CATG 9 cut(s) 65, 140, 256, 265, 355, 460, 665, 763, 1049
HspAI GCGC 1 cut(s) 731
Kpn2I TCCGGA 1 cut(s) 487
Kzo9I GATC 3 cut(s) 708, 1005, 1132
LmnI GCTCC 2 cut(s) 323, 490
Lsp1109I GCAGC 2 cut(s) 858, 1015
LweI GCATC 1 cut(s) 224
MaeIII GTNAC 3 cut(s) 342, 451, 832
MalI GATC 3 cut(s) 710, 1007, 1134
MboI GATC 3 cut(s) 708, 1005, 1132
MboII GAAGA 4 cut(s) 159, 168, 177, 1180
MfeI CAATTG 1 cut(s) 102
MhlI GDGCHC 5 cut(s) 15, 195, 464, 600, 769
MlsI TGGCCA 1 cut(s) 692
MluCI AATT 3 cut(s) 102, 574, 978
MluNI TGGCCA 1 cut(s) 692
MlyI GAGTC 2 cut(s) 634, 708
MmeI TCCRAC 1 cut(s) 1170
Mox20I TGGCCA 1 cut(s) 692
MroI TCCGGA 1 cut(s) 487
MroXI GAANNNNTTC 1 cut(s) 1199
MscI TGGCCA 1 cut(s) 692
MslI CAYNNNNRTG 2 cut(s) 135, 758
Msp20I TGGCCA 1 cut(s) 692
MspA1I CMGCKG 1 cut(s) 499
MspI CCGG 7 cut(s) 189, 196, 248, 405, 488, 612, 875
MspR9I CCNGG 6 cut(s) 190, 196, 248, 290, 876, 1016
MunI CAATTG 1 cut(s) 102
Mva1269I GAATGC 1 cut(s) 205
MvaI CCWGG 2 cut(s) 290, 1016
MvnI CGCG 1 cut(s) 890
MwoI GCNNNNNNNGC 6 cut(s) 505, 589, 654, 877, 880, 1056
NciI CCSGG 4 cut(s) 190, 196, 248, 876
NcoI CCATGG 3 cut(s) 252, 661, 1045
NdeII GATC 3 cut(s) 708, 1005, 1132
NlaIII CATG 9 cut(s) 65, 140, 256, 265, 355, 460, 665, 763, 1049
NlaIV GGNNCC 4 cut(s) 57, 193, 194, 294
NmuCI GTSAC 1 cut(s) 451
PagI TCATGA 1 cut(s) 61
PceI AGGCCT 1 cut(s) 860
PctI GAATGC 1 cut(s) 205
PdmI GAANNNNTTC 1 cut(s) 1199
PfeI GAWTC 4 cut(s) 615, 806, 1151, 1195
PflMI CCANNNNNTGG 1 cut(s) 424
PfoI TCCNGGA 1 cut(s) 1014
PkrI GCNGC 5 cut(s) 498, 873, 882, 892, 1030
PleI GAGTC 2 cut(s) 633, 708
PpsI GAGTC 2 cut(s) 633, 708
PpuMI RGGWCCY 2 cut(s) 55, 292
Psp5II RGGWCCY 2 cut(s) 55, 292
Psp6I CCWGG 2 cut(s) 288, 1014
PspGI CCWGG 2 cut(s) 288, 1014
PspN4I GGNNCC 4 cut(s) 57, 193, 194, 294
PspOMI GGGCCC 1 cut(s) 191
PspPI GGNCC 5 cut(s) 55, 191, 192, 286, 292
PspPPI RGGWCCY 2 cut(s) 55, 292
RsaI GTAC 2 cut(s) 117, 473
RsaNI GTAC 2 cut(s) 116, 472
RseI CAYNNNNRTG 2 cut(s) 135, 758
SatI GCNGC 5 cut(s) 497, 872, 881, 891, 1029
Sau3AI GATC 3 cut(s) 708, 1005, 1132
Sau96I GGNCC 5 cut(s) 55, 191, 192, 286, 292
SchI GAGTC 2 cut(s) 634, 708
ScrFI CCNGG 6 cut(s) 190, 196, 248, 290, 876, 1016
SduI GDGCHC 5 cut(s) 15, 195, 464, 600, 769
SetI ASST 8 cut(s) 273, 294, 320, 337, 510, 723, 1086, 1149
SfaNI GCATC 1 cut(s) 224
SinI GGWCC 2 cut(s) 55, 292
SmiMI CAYNNNNRTG 2 cut(s) 135, 758
SmlI CTYRAG 2 cut(s) 716, 1085
SmoI CTYRAG 2 cut(s) 716, 1085
Sse9I AATT 3 cut(s) 102, 574, 978
SseBI AGGCCT 1 cut(s) 860
SsiI CCGC 7 cut(s) 211, 243, 497, 880, 890, 893, 920
StuI AGGCCT 1 cut(s) 860
StyD4I CCNGG 6 cut(s) 188, 194, 246, 288, 874, 1014
StyI CCWWGG 4 cut(s) 252, 661, 693, 1045
TaaI ACNGT 3 cut(s) 306, 841, 1012
TaqI TCGA 1 cut(s) 911
TasI AATT 3 cut(s) 102, 574, 978
TauI GCSGC 3 cut(s) 499, 883, 893
TfiI GAWTC 4 cut(s) 615, 806, 1151, 1195
TscAI CASTG 3 cut(s) 921, 1015, 1182
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 2 cut(s) 871, 1028
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 3 cut(s) 156, 159, 1042
TspRI CASTG 3 cut(s) 921, 1015, 1182
Van91I CCANNNNNTGG 1 cut(s) 424
VneI GTGCAC 1 cut(s) 460
VpaK11BI GGWCC 2 cut(s) 55, 292
XmnI GAANNNNTTC 1 cut(s) 1199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.